Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTCTACATCACTCGATCAAAAGCAGTTGTGGGTCATCTGGTACGTATTTAAATATTGAATAATTTTTTTAAATTCTTTACTCAATTAACTATTCTCTTTTTTTTTTTTTCAATTCATAGAGATCGAACAACAAAAGATTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGACATACATTATATGTACGATGTACCTATCCTCCATGTACCTATTGTACTTCCACCAGTTAACAGGGAACGTGTTCGAGTGGAAGAACCTGAACTCGATAAAGTTTACCATAACGTAGAAGAAGTACCTCCAATGACACAAACACATAGCCAAACTGGTTATGGTAGCCCGACGATGACGATCCTAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATTCAGGGGTCGGTTCATCGTCTTCATGCATGGATGTCAGACCATCAACTTCTTACATGCATGGACATGGACACGGACGAGGCCGCGAAGAACATAACGAATATATGTACTATGAAGCACCTACAGACGTCCCAGATCCACAAGAGTACCAACAAAAACCAGAGAATTAA
mRNA sequence
ATGAGGCTCTACATCACTCGATCAAAAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGATTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGACATACATTATATGTACGATGTACCTATCCTCCATGTACCTATTGTACTTCCACCAGTTAACAGGGAACGTGTTCGAGTGGAAGAACCTGAACTCGATAAAGTTTACCATAACGTAGAAGAAGTACCTCCAATGACACAAACACATAGCCAAACTGGTTATGGTAGCCCGACGATGACGATCCTAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATTCAGGGGTCGGTTCATCGTCTTCATGCATGGATGTCAGACCATCAACTTCTTACATGCATGGACATGGACACGGACGAGGCCGCGAAGAACATAACGAATATATGTACTATGAAGCACCTACAGACGTCCCAGATCCACAAGAGTACCAACAAAAACCAGAGAATTAA
Coding sequence (CDS)
ATGAGGCTCTACATCACTCGATCAAAAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGATTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGACATACATTATATGTACGATGTACCTATCCTCCATGTACCTATTGTACTTCCACCAGTTAACAGGGAACGTGTTCGAGTGGAAGAACCTGAACTCGATAAAGTTTACCATAACGTAGAAGAAGTACCTCCAATGACACAAACACATAGCCAAACTGGTTATGGTAGCCCGACGATGACGATCCTAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATTCAGGGGTCGGTTCATCGTCTTCATGCATGGATGTCAGACCATCAACTTCTTACATGCATGGACATGGACACGGACGAGGCCGCGAAGAACATAACGAATATATGTACTATGAAGCACCTACAGACGTCCCAGATCCACAAGAGTACCAACAAAAACCAGAGAATTAA
Protein sequence
MRLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVLPPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGYYDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN
Homology
BLAST of PI0004177 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.6e-63
Identity = 130/177 (73.45%), Postives = 143/177 (80.79%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYITR A+VGHLRSNN R RDV +DPQQVLDICNNNERYME IH +YD +PIV
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYD-----LPIVP 362
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
PPV+RER RVEE ELD+VYHNVEEVPP TQT SQTGYGSP + TFGAGYCDSEV GY
Sbjct: 363 PPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGY 422
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
YD+ VG SS MDV PSTSYM+GHG G G EHNEY+Y+EAPTDV D QEYQQ+P+N
Sbjct: 423 YDAVVGPLSSYMDVGPSTSYMYGHGRGYG--EHNEYLYHEAPTDVSDRQEYQQEPKN 472
BLAST of PI0004177 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 236.9 bits (603), Expect = 6.6e-59
Identity = 128/177 (72.32%), Postives = 137/177 (77.40%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYITR A VG RSNN R RDVADD QQ LDICNNNERYME+IH MYD +PIV
Sbjct: 27 RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYD-----LPIVP 86
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
PPV+R VRVEE ELDKVYHNVEEVP TQT SQTGYGSP + TF AGYCD EVG GY
Sbjct: 87 PPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGY 146
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
YD+GVG SSS +DV PSTSYMHGH G G EHNEY+Y+EAP DV D QEYQQ+PEN
Sbjct: 147 YDAGVGPSSSYVDVSPSTSYMHGHSRGYG--EHNEYLYHEAPADVSDRQEYQQEPEN 194
BLAST of PI0004177 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 224.9 bits (572), Expect = 2.6e-55
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0
Query: 16 RSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVLPPVNRERVRVEEPE 75
RSNN R RDVADD QQ LDICNNNERYME+IH MYD +PIV PPV+R VRVEE E
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYD-----LPIVPPPVHRGCVRVEEAE 86
Query: 76 LDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGYYDSGVGSSSSCMDV 135
LDKVYHNVEEVP TQT SQTGYGSP + TF AGYCD EVG GYYD+GVG SSS +DV
Sbjct: 87 LDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDV 146
Query: 136 RPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
PSTSYMHGH G G EHNEY+Y+EAP DV D QEYQQ+PEN
Sbjct: 147 SPSTSYMHGHRRGYG--EHNEYLYHEAPADVSDRQEYQQEPEN 182
BLAST of PI0004177 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 224.9 bits (572), Expect = 2.6e-55
Identity = 119/177 (67.23%), Postives = 137/177 (77.40%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYIT+ +G RSNN R RDVADD QQVLDICNNN+R+ME+IH MY H+PIV
Sbjct: 26 RLYITQ----LGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMY-----HLPIVP 85
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
P ++R RV+VEE ELD+VYHNVEE+ P TQ +QTGYGSP + + TFG GYCD EV T Y
Sbjct: 86 PQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEY 145
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
YDSGVG SSS MDV PSTSYMHGH H G EHNEY+Y+EAPT+V D QEYQQ+PEN
Sbjct: 146 YDSGVGPSSSYMDVGPSTSYMHGHRHDYG--EHNEYLYHEAPTEVSDRQEYQQEPEN 191
BLAST of PI0004177 vs. ExPASy TrEMBL
Match:
A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)
HSP 1 Score: 216.1 bits (549), Expect = 1.2e-52
Identity = 112/157 (71.34%), Postives = 124/157 (78.98%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYITR +A VGHLRSNN R RDVADDPQQVL+ICNNN+RYME+IH MYD + IV
Sbjct: 135 RLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYD-----LSIVP 194
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
PPV+R RVRVEE ELD+VYHNVEEVPP TQT SQTGYGSP + TFGAGY DSEVGTGY
Sbjct: 195 PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGY 254
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYM 159
YD+G+ SS MDV PS YMHGH G G EHN+Y+
Sbjct: 255 YDAGISPSSLYMDVGPSNFYMHGHKRGYG--EHNKYL 284
BLAST of PI0004177 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 251.5 bits (641), Expect = 5.3e-63
Identity = 130/177 (73.45%), Postives = 143/177 (80.79%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYITR A+VGHLRSNN R RDV +DPQQVLDICNNNERYME IH +YD +PIV
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYD-----LPIVP 362
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
PPV+RER RVEE ELD+VYHNVEEVPP TQT SQTGYGSP + TFGAGYCDSEV GY
Sbjct: 363 PPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGY 422
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
YD+ VG SS MDV PSTSYM+GHG G G EHNEY+Y+EAPTDV D QEYQQ+P+N
Sbjct: 423 YDAVVGPLSSYMDVGPSTSYMYGHGRGYG--EHNEYLYHEAPTDVSDRQEYQQEPKN 472
BLAST of PI0004177 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 128/177 (72.32%), Postives = 137/177 (77.40%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYITR A VG RSNN R RDVADD QQ LDICNNNERYME+IH MYD +PIV
Sbjct: 27 RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYD-----LPIVP 86
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
PPV+R VRVEE ELDKVYHNVEEVP TQT SQTGYGSP + TF AGYCD EVG GY
Sbjct: 87 PPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGY 146
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
YD+GVG SSS +DV PSTSYMHGH G G EHNEY+Y+EAP DV D QEYQQ+PEN
Sbjct: 147 YDAGVGPSSSYVDVSPSTSYMHGHSRGYG--EHNEYLYHEAPADVSDRQEYQQEPEN 194
BLAST of PI0004177 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 224.9 bits (572), Expect = 5.3e-55
Identity = 119/163 (73.01%), Postives = 128/163 (78.53%), Query Frame = 0
Query: 16 RSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVLPPVNRERVRVEEPE 75
RSNN R RDVADD QQ LDICNNNERYME+IH MYD +PIV PPV+R VRVEE E
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYD-----LPIVPPPVHRGCVRVEEAE 86
Query: 76 LDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGYYDSGVGSSSSCMDV 135
LDKVYHNVEEVP TQT SQTGYGSP + TF AGYCD EVG GYYD+GVG SSS +DV
Sbjct: 87 LDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDV 146
Query: 136 RPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
PSTSYMHGH G G EHNEY+Y+EAP DV D QEYQQ+PEN
Sbjct: 147 SPSTSYMHGHRRGYG--EHNEYLYHEAPADVSDRQEYQQEPEN 182
BLAST of PI0004177 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 224.9 bits (572), Expect = 5.3e-55
Identity = 119/177 (67.23%), Postives = 137/177 (77.40%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYIT+ +G RSNN R RDVADD QQVLDICNNN+R+ME+IH MY H+PIV
Sbjct: 26 RLYITQ----LGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMY-----HLPIVP 85
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
P ++R RV+VEE ELD+VYHNVEE+ P TQ +QTGYGSP + + TFG GYCD EV T Y
Sbjct: 86 PQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEY 145
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYMYYEAPTDVPDPQEYQQKPEN 179
YDSGVG SSS MDV PSTSYMHGH H G EHNEY+Y+EAPT+V D QEYQQ+PEN
Sbjct: 146 YDSGVGPSSSYMDVGPSTSYMHGHRHDYG--EHNEYLYHEAPTEVSDRQEYQQEPEN 191
BLAST of PI0004177 vs. NCBI nr
Match:
KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 216.1 bits (549), Expect = 2.5e-52
Identity = 112/157 (71.34%), Postives = 124/157 (78.98%), Query Frame = 0
Query: 2 RLYITRSKAVVGHLRSNNKRFRDVADDPQQVLDICNNNERYMEDIHYMYDVPILHVPIVL 61
RLYITR +A VGHLRSNN R RDVADDPQQVL+ICNNN+RYME+IH MYD + IV
Sbjct: 135 RLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYD-----LSIVP 194
Query: 62 PPVNRERVRVEEPELDKVYHNVEEVPPMTQTHSQTGYGSPTMTILTFGAGYCDSEVGTGY 121
PPV+R RVRVEE ELD+VYHNVEEVPP TQT SQTGYGSP + TFGAGY DSEVGTGY
Sbjct: 195 PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGY 254
Query: 122 YDSGVGSSSSCMDVRPSTSYMHGHGHGRGREEHNEYM 159
YD+G+ SS MDV PS YMHGH G G EHN+Y+
Sbjct: 255 YDAGISPSSLYMDVGPSNFYMHGHKRGYG--EHNKYL 284
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DJV7 | 2.6e-63 | 73.45 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 6.6e-59 | 72.32 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 2.6e-55 | 73.01 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 2.6e-55 | 67.23 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7TBF8 | 1.2e-52 | 71.34 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK23842.1 | 5.3e-63 | 73.45 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0062642.1 | 1.4e-58 | 72.32 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 5.3e-55 | 73.01 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0025972.1 | 5.3e-55 | 67.23 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0038951.1 | 2.5e-52 | 71.34 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
