PI0004173 (gene) Melon (PI 482460) v1

Overview


Name	PI0004173
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pre-mRNA cleavage factor Im 25 kDa subunit
Location	chr05: 179260 .. 182128 (+)
RNA-Seq Expression	PI0004173
Synteny	PI0004173

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTAGCATCATTCTATTCTATTCTCAAATTCCATCTCGTCCCTTCCCTTTTGCTTTCCCAGTGGTCGTCTTGTCCGTCTCTTATTTTAGTCTTTAATTAGACTTTAGAATTAAAATTCCGCAGGGTGAGTGACGCCATTCCACTTTTCCGCTTCGTGTCCCTTCTCTCCAACCAACACGACATCTTTCTTCTTCTTCATACTTCCTACTACCACCATACCTATATTCCTTTAAACTACCTTTTCATTCTCCTTCTGATCTTCATTTCTCAATCCTCGCCATGGGAGACGACGGACGTCTGCATGCTATTGACGACGATGAAGCTTCTTCCGCCGACCAACTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTCGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAAGTATCCATTCTCACTGTATTCCGTTGACTATACTTTGCTCTTTAATACCTACCTTCAATTTCTCTATTCTGTTTTTTTTTTCTCGCAGTTATGCTGCTTACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTCGTTCCTTCCTTACAACTATTTTATTTTATATACTTCCATTTCCGGAATCTTCAGTCTCCTAAGTCCTACTGATTGATTTCTTTAAGGATATAGAGTTTTTATACTGCCTCTGTTGTTGCCGTCCTCCAATTGCTTGACGCGTACTTAATCGGTAGAGTTCTGATTCTGTTGGCCCCTGTCAGTGTAGTTATAACTTCTACAGCAGTTTAGACAGCATCGACCTATTTGGCCTCTTCTCCCACTATTCTTAGATTTACAGATCACGATGCCTCTAAGAGTAGCTGTTATGAAATCAACAAATAAAATTAAGAAGAAAAGTCCGAATGGTAGGAAACTGACACAAAGATTTACATGTTCACTAACAGTGCGTGAGTTTCTTGTTAGAGAATGATTCCGGATACAGATGGTTTCTAACTGTAGAGTTTATGTAGCGCACTTTTCTAAATTCTATAGTAAAAGGTATTGACTAACATAAATAGGCAAAATACAGATACAATTTAGGGTTCAACGATAATTAAGTATAGCTTTCAGTTAATTTATGATTCACAAGTTCTGTCTCTTGGCCGTATTGGCTTTTGTGGGATTGGTTCTTTATTTTTGGGGAATGAACATGAATTTTTGCATCCATACATGATCTCCATACTTCATTTCCGTTTTGGGAGAAATCATGGTAGGTCGGCCTTTTCTATCCATAATACCTTTTAGGAGATAAGTTTTAGAATTATGAACCTGAATTCAGGACGCTTTTTTCTGCTATACAATTTCTAGATGGACGTTTCATCTTGCTATCAGGAACAGTTCTTAGTCTTCTGCATTATAATTGAAAGTGCCTGTTGTTCTCAAATTAGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCCTAAGGCCCAACGAATCAGGTAAATTTGTTTTTTAGATTTCTTCTGCAGCTGCGTTTGTCTAAGTCTAATAGTTATGCTGATATTTTATCATGGTTGATGATCTCAATTTACAGATATTGATGGCTTGACACGAAAGTTGTCGAGGAAGCTTTCTGCCAACGGAGCCTCTGATGCTTCTGATTGGGAGGTATTGTAATGCCCAAATCTATTCCTTTAATTTCTCTACCATATTACTGCTGCGTTTGTGAACGATGGAATTTGAATTTTCTGCTTTTTGTCGTTTAGGTTAGCGAGTGCCTCGGTATGTGGTGGAGGGCGGACTTTGAGACCTTGCTCTTTCCGTATTTGTCCACTAATGTAAAAGGGGCCAAGGTAGTTATTTGAATGCGAACTACCTCCTTTAAACTACGACATGCATCCTTTACCTTTAACTCACTCACTCTGATGCAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCAGAGAGTCGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGGTATCCTAATCAAGTCACTTCGTGGAAGTCCAATTTGTAACATTTTAAAATCTTACTTTTTGTTGAAGGATTGAAAGAAAAGGAGACGAATTTCAATCGTTGAAACAAGTCTATATATTGTTGAATAAAATGTGGTGCATAATCTAACTACATGTAAATCCCATCATCCTGCAGACATATGGGCCAGTTATATCGGGCATTCCGCAGCTTCTTTCTAAGTTCTCCTTCAACATCATCGAAACCTAAGATTCATCTTATTAATTATAACAGATGAAGAACTATGGTCGAAGCAGAGAAAAGAATATTTATTAGTGCATTATAGAGCTGTCAGCAAACTTTATATGAATGTTGACCGACCCTGTATAAAACATATTATAAGCACATAAATCATGGTGATGATTTTGTAAGTATAAAGATATATAGTAGTAATATAGGTCCACATTGTCACTTTACCACTTGTGTGTTTGAGTGCTAAAAACTACACATGATTGTGCCAATTATCTTGACTTTCTTGTGGTAATGAATAGAGTTTTGATCATTCTCACTAGAGGATGCGGAGAAGTGATGAGGTATGATAGAGGAAATTTTGTGTATATGTATGAGGTATGTTAGAGGAAATTGTGTGTATACGTATGGATAGTGAAGGTTGTGTTTATGTATTTATGTGTTTACGTGTTTATGCTGTGTCAAAAGTGGAAAATAAATATGTGTTAAGTATGTTAGAGGAAATTGTGTACATGTATGGATAGTGAAGGTTGCGTTATATATGATTGTTATCCTTATCGGACAGTTTTTG

mRNA sequence

GTTTAGCATCATTCTATTCTATTCTCAAATTCCATCTCGTCCCTTCCCTTTTGCTTTCCCAGTGGTCGTCTTGTCCGTCTCTTATTTTAGTCTTTAATTAGACTTTAGAATTAAAATTCCGCAGGGTGAGTGACGCCATTCCACTTTTCCGCTTCGTGTCCCTTCTCTCCAACCAACACGACATCTTTCTTCTTCTTCATACTTCCTACTACCACCATACCTATATTCCTTTAAACTACCTTTTCATTCTCCTTCTGATCTTCATTTCTCAATCCTCGCCATGGGAGACGACGGACGTCTGCATGCTATTGACGACGATGAAGCTTCTTCCGCCGACCAACTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTCGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTTACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCCTAAGGCCCAACGAATCAGATATTGATGGCTTGACACGAAAGTTGTCGAGGAAGCTTTCTGCCAACGGAGCCTCTGATGCTTCTGATTGGGAGGTTAGCGAGTGCCTCGGTATGTGGTGGAGGGCGGACTTTGAGACCTTGCTCTTTCCGTATTTGTCCACTAATGTAAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCAGAGAGTCGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGGCCAGTTATATCGGGCATTCCGCAGCTTCTTTCTAAGTTCTCCTTCAACATCATCGAAACCTAAGATTCATCTTATTAATTATAACAGATGAAGAACTATGGTCGAAGCAGAGAAAAGAATATTTATTAGTGCATTATAGAGCTGTCAGCAAACTTTATATGAATGTTGACCGACCCTGTATAAAACATATTATAAGCACATAAATCATGGTGATGATTTTGTAAGTATAAAGATATATAGTAGTAATATAGGTCCACATTGTCACTTTACCACTTGTGTGTTTGAGTGCTAAAAACTACACATGATTGTGCCAATTATCTTGACTTTCTTGTGGTAATGAATAGAGTTTTGATCATTCTCACTAGAGGATGCGGAGAAGTGATGAGGTATGATAGAGGAAATTTTGTGTATATGTATGAGGTATGTTAGAGGAAATTGTGTGTATACGTATGGATAGTGAAGGTTGTGTTTATGTATTTATGTGTTTACGTGTTTATGCTGTGTCAAAAGTGGAAAATAAATATGTGTTAAGTATGTTAGAGGAAATTGTGTACATGTATGGATAGTGAAGGTTGCGTTATATATGATTGTTATCCTTATCGGACAGTTTTTG

Coding sequence (CDS)

ATGGGAGACGACGGACGTCTGCATGCTATTGACGACGATGAAGCTTCTTCCGCCGACCAACTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTCGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTTACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCCTAAGGCCCAACGAATCAGATATTGATGGCTTGACACGAAAGTTGTCGAGGAAGCTTTCTGCCAACGGAGCCTCTGATGCTTCTGATTGGGAGGTTAGCGAGTGCCTCGGTATGTGGTGGAGGGCGGACTTTGAGACCTTGCTCTTTCCGTATTTGTCCACTAATGTAAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCAGAGAGTCGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGGCCAGTTATATCGGGCATTCCGCAGCTTCTTTCTAAGTTCTCCTTCAACATCATCGAAACCTAA

Protein sequence

MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET

Homology

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BLAST of PI0004173 vs. ExPASy Swiss-Prot
Match: Q94AF0 (Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CFIS1 PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.6e-80
Identity = 144/221 (65.16%), Postives = 177/221 (80.09%), Query Frame = 0


Query: 1   MGDDGR---LHAIDDDEASSADQLS--YIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMK 60
           MG++ R   +  I D+     D +    +D+YPLS+YYFGSKE L  KDE +SDRV+R+K
Sbjct: 1   MGEEARALDMEEISDNTTRRNDVVHDLMVDLYPLSSYYFGSKEALRVKDEIISDRVIRLK 60

Query: 61  SNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRK 120
           SNYAA+GLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPGGRLRP ESDI+GL RKL+ K
Sbjct: 61  SNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKLASK 120

Query: 121 LSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVV 180
           LS N     S +EV EC+GMWWR +FETL++P+L  N+K  KECTKLFLV+LP  ++FVV
Sbjct: 121 LSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVV 180

Query: 181 PKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIE 217
           PKN KL+AVPLCQ+HEN KTYGP++S IP+LLSKFSFN++E
Sbjct: 181 PKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMME 221

[Close]

BLAST of PI0004173 vs. ExPASy Swiss-Prot
Match: Q8GXS3 (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.2e-58
Identity = 103/194 (53.09%), Postives = 140/194 (72.16%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLL 83
           ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL
Sbjct: 7   VNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILL 66

Query: 84  FQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFET 143
            QI N+  KLPGGRL+P E++ DGL RKL+ KL  N A+   DW V EC+  WWR +FET
Sbjct: 67  LQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFET 126

Query: 144 LLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGI 203
           +++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGPVIS I
Sbjct: 127 MMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186

Query: 204 PQLLSKFSFNIIET 218
           PQ LS+F FN+I +
Sbjct: 187 PQQLSRFHFNMISS 200

[Close]

BLAST of PI0004173 vs. ExPASy Swiss-Prot
Match: Q7T3C6 (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-45
Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 38  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97

Query: 84  FQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASDA--SDWEVSECLGMWWRADF 143
            Q+  + FKLPGG L P E +++GL R ++  L   G  D    DW + +C+G WWR +F
Sbjct: 98  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVKQDWVIDDCIGNWWRPNF 157

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGP+IS
Sbjct: 158 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 217

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 218 SLPQLLSRFNF 225

[Close]

BLAST of PI0004173 vs. ExPASy Swiss-Prot
Match: Q3ZCA2 (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-45
Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 84  FQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASDA--SDWEVSECLGMWWRADF 143
            Q+  + FKLPGG L P E +++GL R ++  L   G  D    DW + +C+G WWR +F
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVLQDWVIDDCIGNWWRPNF 156

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGP+IS
Sbjct: 157 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 216

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 217 SLPQLLSRFNF 224

[Close]

BLAST of PI0004173 vs. ExPASy Swiss-Prot
Match: O43809 (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=9606 GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-45
Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 84  FQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASDA--SDWEVSECLGMWWRADF 143
            Q+  + FKLPGG L P E +++GL R ++  L   G  D    DW + +C+G WWR +F
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVLQDWVIDDCIGNWWRPNF 156

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGP+IS
Sbjct: 157 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 216

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 217 SLPQLLSRFNF 224

[Close]

BLAST of PI0004173 vs. ExPASy TrEMBL
Match: A0A0A0LIM0 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_2G000310 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.3e-116
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHAIDDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA
Sbjct: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
           +GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL++KLSANG
Sbjct: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDAS WEVSECLGMWWR DFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LIAVPLCQIHENHKTYGP+ISGIPQLLSKFSFNII T
Sbjct: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 217

[Close]

BLAST of PI0004173 vs. ExPASy TrEMBL
Match: A0A1S3C9Z9 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103498651 PE=3 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.3e-114
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRILRMKSNY 60

Query: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSA 120
           AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLS+KL A
Sbjct: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLCA 120

Query: 121 NGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDASDWEV+ECLGMWWR DFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNII T
Sbjct: 181 LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIGT 219

[Close]

BLAST of PI0004173 vs. ExPASy TrEMBL
Match: A0A6J1FHN4 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111444047 PE=3 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.9e-106
Identity = 186/217 (85.71%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAA
Sbjct: 1   MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVIRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
           YGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRPNESDIDGL RKLSRKLSANG
Sbjct: 61  YGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           A DASDWEV +CLG WWR DFETLL+P+LS NVKGAKECTKLFLVKLPE+RKF+VPKNLK
Sbjct: 121 APDASDWEVGDCLGTWWRPDFETLLYPHLSNNVKGAKECTKLFLVKLPENRKFIVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LIAVPLCQ+HENHK YGPVISGIPQLLSKFSFNIIET
Sbjct: 181 LIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET 217

[Close]

BLAST of PI0004173 vs. ExPASy TrEMBL
Match: A0A6J1HNY2 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111465348 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.1e-106
Identity = 187/217 (86.18%), Postives = 204/217 (94.01%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAA
Sbjct: 1   MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVIRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
           YGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRPNESDIDGL RKLSRKLSANG
Sbjct: 61  YGLRTSVEAVLLVELFKHPHVLLLQIRNSIFSLPGGRLRPNESDIDGLKRKLSRKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           + DASDWEV +CLG WWR DFETLL PYLS NVKGAKECTKLFLVKLPESRKF+VPKNLK
Sbjct: 121 SPDASDWEVGDCLGTWWRPDFETLLNPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LIAVPLCQ+HENHK YGPVISGIPQLLSKFSFNIIET
Sbjct: 181 LIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET 217

[Close]

BLAST of PI0004173 vs. ExPASy TrEMBL
Match: A0A6J1DN47 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111021937 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.3e-104
Identity = 186/216 (86.11%), Postives = 202/216 (93.52%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGD+G LHA++DDEA++A+Q   + IYPL NYYFGSKEPLLFK+ETL+DR+ RMKSNYAA
Sbjct: 1   MGDNGHLHAMEDDEAATAEQSRAVRIYPLGNYYFGSKEPLLFKNETLADRLHRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
            GLRTCVEAV+LVELFKHPHLLL QIRNSIFKLPGGRLRPNESDIDGL RKLSRKLSANG
Sbjct: 61  NGLRTCVEAVLLVELFKHPHLLLLQIRNSIFKLPGGRLRPNESDIDGLKRKLSRKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
            SDASDWEV ECLGMWWR DFETLL+PYLS+NVKGAKECTKLFLVKLPESRKF+VPKNLK
Sbjct: 121 TSDASDWEVGECLGMWWRPDFETLLYPYLSSNVKGAKECTKLFLVKLPESRKFIVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIE 217
           LIAVPLCQ+HEN KTYGPVISG+PQLLSKFSFNIIE
Sbjct: 181 LIAVPLCQLHENQKTYGPVISGVPQLLSKFSFNIIE 216

[Close]

BLAST of PI0004173 vs. NCBI nr
Match: XP_004141062.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus] >KGN60522.1 hypothetical protein Csa_019305 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 1.9e-115
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHAIDDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA
Sbjct: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
           +GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL++KLSANG
Sbjct: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDAS WEVSECLGMWWR DFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LIAVPLCQIHENHKTYGP+ISGIPQLLSKFSFNII T
Sbjct: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 217

[Close]

BLAST of PI0004173 vs. NCBI nr
Match: XP_008459551.1 (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis melo])

HSP 1 Score: 421.4 bits (1082), Expect = 4.7e-114
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRILRMKSNY 60

Query: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSA 120
           AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLS+KL A
Sbjct: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLCA 120

Query: 121 NGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDASDWEV+ECLGMWWR DFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNII T
Sbjct: 181 LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIGT 219

[Close]

BLAST of PI0004173 vs. NCBI nr
Match: XP_038889512.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1 [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 4.2e-110
Identity = 199/217 (91.71%), Postives = 207/217 (95.39%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHA+DDDEAS+ADQ   I IYPLSNYYF SKEPLLFKDET +DR+LRMKSNYAA
Sbjct: 1   MGDDGRLHAMDDDEASAADQRPSIHIYPLSNYYFESKEPLLFKDETFADRLLRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
           YGLRT VEAV+LVELFKHPHLLLFQIRNSIFKLPGGRLRPNESD+DGLTRKLSRKLSANG
Sbjct: 61  YGLRTSVEAVLLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDVDGLTRKLSRKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDASDWEV ECLGMWWR DFETLLFPYLS+ VKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASDWEVGECLGMWWRPDFETLLFPYLSSTVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LIAVPLCQIHENHKTYGPVISGIPQLLSKFSF+IIET
Sbjct: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFDIIET 217

[Close]

BLAST of PI0004173 vs. NCBI nr
Match: KAG6586493.1 (Pre-mRNA cleavage factor Im 25 kDa subunit 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021351.1 Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 188/217 (86.64%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAA
Sbjct: 1   MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
           YGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRPNESDIDGL RKLSRKLSANG
Sbjct: 61  YGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           A DASDWEV +CLG WWR DFETLL+PYLS NVKGAKECTKLFLVKLPESRKF+VPKNLK
Sbjct: 121 APDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LIAVPLCQ+HENHK YGPVISGIPQLLSKFSFNIIET
Sbjct: 181 LIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET 217

[Close]

BLAST of PI0004173 vs. NCBI nr
Match: XP_023536755.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.8 bits (1013), Expect = 4.8e-106
Identity = 187/217 (86.18%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAA
Sbjct: 1   MGDDGRMHAMEDDESATADQIRAIDIYPLSNYYFGSKEPLVFKDKTLADRVIRMKSNYAA 60

Query: 61  YGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANG 120
           YGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRPNESDIDGL RKLSRKLSANG
Sbjct: 61  YGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANG 120

Query: 121 ASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           A DASDWEV +CLG WWR DFETLL+P+LS NVKGAKECTKLFLVKLPESRKF+VPKNLK
Sbjct: 121 APDASDWEVGDCLGTWWRPDFETLLYPHLSNNVKGAKECTKLFLVKLPESRKFIVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET 218
           LIAVPLCQ+HENHK YGPVISGIPQLLSKFSFNIIET
Sbjct: 181 LIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET 217

[Close]

BLAST of PI0004173 vs. TAIR 10
Match: AT4G29820.1 (homolog of CFIM-25 )

HSP 1 Score: 299.3 bits (765), Expect = 2.5e-81
Identity = 144/221 (65.16%), Postives = 177/221 (80.09%), Query Frame = 0


Query: 1   MGDDGR---LHAIDDDEASSADQLS--YIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMK 60
           MG++ R   +  I D+     D +    +D+YPLS+YYFGSKE L  KDE +SDRV+R+K
Sbjct: 1   MGEEARALDMEEISDNTTRRNDVVHDLMVDLYPLSSYYFGSKEALRVKDEIISDRVIRLK 60

Query: 61  SNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRK 120
           SNYAA+GLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPGGRLRP ESDI+GL RKL+ K
Sbjct: 61  SNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKLASK 120

Query: 121 LSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVV 180
           LS N     S +EV EC+GMWWR +FETL++P+L  N+K  KECTKLFLV+LP  ++FVV
Sbjct: 121 LSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVV 180

Query: 181 PKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIE 217
           PKN KL+AVPLCQ+HEN KTYGP++S IP+LLSKFSFN++E
Sbjct: 181 PKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMME 221

[Close]

BLAST of PI0004173 vs. TAIR 10
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit )

HSP 1 Score: 226.9 bits (577), Expect = 1.6e-59
Identity = 103/194 (53.09%), Postives = 140/194 (72.16%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLL 83
           ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL
Sbjct: 7   VNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILL 66

Query: 84  FQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFET 143
            QI N+  KLPGGRL+P E++ DGL RKL+ KL  N A+   DW V EC+  WWR +FET
Sbjct: 67  LQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFET 126

Query: 144 LLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGI 203
           +++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGPVIS I
Sbjct: 127 MMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186

Query: 204 PQLLSKFSFNIIET 218
           PQ LS+F FN+I +
Sbjct: 187 PQQLSRFHFNMISS 200

The following BLAST results are available for this feature:

BLAST of PI0004173 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AF0	3.6e-80	65.16	Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8GXS3	2.2e-58	53.09	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q7T3C6	1.7e-45	45.03	Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955...	[more]
Q3ZCA2	2.2e-45	45.03	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 ...	[more]
O43809	2.2e-45	45.03	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=960...	[more]

BLAST of PI0004173 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIM0	9.3e-116	95.39	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_2G0...	[more]
A0A1S3C9Z9	2.3e-114	94.52	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo OX=3656 GN=LOC1034986...	[more]
A0A6J1FHN4	3.9e-106	85.71	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HNY2	5.1e-106	86.18	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1DN47	1.3e-104	86.11	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of PI0004173 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141062.1	1.9e-115	95.39	pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus] >KGN60522.1 hypot...	[more]
XP_008459551.1	4.7e-114	94.52	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis melo]	[more]
XP_038889512.1	4.2e-110	91.71	pre-mRNA cleavage factor Im 25 kDa subunit 1 [Benincasa hispida]	[more]
KAG6586493.1	1.3e-106	86.64	Pre-mRNA cleavage factor Im 25 kDa subunit 1, partial [Cucurbita argyrosperma su...	[more]
XP_023536755.1	4.8e-106	86.18	pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0004173 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29820.1	2.5e-81	65.16	homolog of CFIM-25	[more]
AT4G25550.1	1.6e-59	53.09	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 24..210 e-value: 3.0E-69 score: 232.3
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIRSF	PIRSF017888	CPSF-25	coord: 4..217 e-value: 1.8E-78 score: 260.8
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 11..216
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 22..214 e-value: 1.9E-73 score: 248.0
None	No IPR available	PANTHER	PTHR13047:SF1	PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 1	coord: 11..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004173.1	PI0004173.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006457	protein folding
cellular_component	GO:0005832	chaperonin-containing T-complex
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0051082	unfolded protein binding