PI0004143 (gene) Melon (PI 482460) v1

Overview


Name	PI0004143
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	WUSCHEL-related homeobox 3
Location	chr11: 6253757 .. 6255088 (+)
RNA-Seq Expression	PI0004143
Synteny	PI0004143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTCCAAAAACAAACAAACAAAAATTATGTCTCCATCAAGTATTACTCCTTCAAGATGGTGTCCAACACCAGAACAAGTGATGATTTTGGAAGAGATTTATAGAAATGGGCTTAAAACTCCTAATGCCACTCAAATTCAACATATTACTTCTCATCTTTCTTTCTATGGTAAAATTGAAGGCAAAAATGTTTTCTATTGGTTCCAAAATCACAAGGCTAGAGATCGACAAAAGCTTAGGAGGAAACTCTATAAGCAGCTTCAACAACATCATTTCTTTATGAAACGACAACGTTTTGATGATCATGATGATCATCATAACTTCTTTCAATATTTCCTTCCTCACCATGTTCCCCAACTACTCCCACAGCTTCCTTCTCCCTCTTCTCTTCAGGTACTTACTCTTTTCTTTGTTGACTTTATTCATATTCAAATGTTTGACTTTTTAGATGTACGTTGGAGAACAGGTAATTATGGTGTAAGTTAAGTAAATGTATATAAAAATTAATTTTGATTCTAATATAAGTTTAATTATGATAAGAAAACAAAACTTCAGTATTATCAAAGTTGTGTACAACTCAAACAGTTAGTTCAATAAAAAATTGTCATCTGACAAATAATTTTAATTTATTTTATTTTTTCAAATGAAGAATGTATGAGACTAGAAGCATCTAATTATTATTGTTCTTGTTGTAATTCAACATGGTTCTATAAATGATTCTTTTTTAATAATTAGTGTTTTTCTAGTACATTATGGTAGAAAATTTGAACTAATTTCATACTCAAGTAAAAGTCCCAATTGCACTCATCTTCATTGTATTCTCTTCTTTTATATATATAAAAAATTATCGAAAACTATGCAAAAAAGATAAGTGTGGTTGGAGGTATAGAAAGTCAAAAGTATTCTTCTAATACTAATGTGTAAACGTTTTTTTATGGTTTTTATTACATTAATGATGCTATGTTTTTTAAAAATTAAAAAAGAGAGAGAGAGAGAATGTAAGCACATTTTATTTTTTTCTATTTATGTGAAAGCTTTTTTTATTTTATTTTATTTATTTTTTTATAGAGTGTAAAGAATTAATGAGATTTTGTTTATGCAGAGGGAGCTGGGTGAAGAGGAGGCAGCGACGGAGGTGGAGGGTGGTGAAGGGAGGAGGTGGTTGGGCGGCGATGAGGGAACGACGGTGGCAGAGGAAGATGGAGAAACGACATGTCGTAATGGGACTTTAAGGACGTTGGAGTTGTTTCCGGTGAGAGCGAGTTGGGTGAACGAGGAAGAAGGGACGAGTGGAAACGGTGGATGGGGAATTAATGGAAAATAAATTATA

mRNA sequence

CAAATTCCAAAAACAAACAAACAAAAATTATGTCTCCATCAAGTATTACTCCTTCAAGATGGTGTCCAACACCAGAACAAGTGATGATTTTGGAAGAGATTTATAGAAATGGGCTTAAAACTCCTAATGCCACTCAAATTCAACATATTACTTCTCATCTTTCTTTCTATGGTAAAATTGAAGGCAAAAATGTTTTCTATTGGTTCCAAAATCACAAGGCTAGAGATCGACAAAAGCTTAGGAGGAAACTCTATAAGCAGCTTCAACAACATCATTTCTTTATGAAACGACAACGTTTTGATGATCATGATGATCATCATAACTTCTTTCAATATTTCCTTCCTCACCATGTTCCCCAACTACTCCCACAGCTTCCTTCTCCCTCTTCTCTTCAGAGGGAGCTGGGTGAAGAGGAGGCAGCGACGGAGGTGGAGGGTGGTGAAGGGAGGAGGTGGTTGGGCGGCGATGAGGGAACGACGGTGGCAGAGGAAGATGGAGAAACGACATGTCGTAATGGGACTTTAAGGACGTTGGAGTTGTTTCCGGTGAGAGCGAGTTGGGTGAACGAGGAAGAAGGGACGAGTGGAAACGGTGGATGGGGAATTAATGGAAAATAAATTATA

Coding sequence (CDS)

ATGTCTCCATCAAGTATTACTCCTTCAAGATGGTGTCCAACACCAGAACAAGTGATGATTTTGGAAGAGATTTATAGAAATGGGCTTAAAACTCCTAATGCCACTCAAATTCAACATATTACTTCTCATCTTTCTTTCTATGGTAAAATTGAAGGCAAAAATGTTTTCTATTGGTTCCAAAATCACAAGGCTAGAGATCGACAAAAGCTTAGGAGGAAACTCTATAAGCAGCTTCAACAACATCATTTCTTTATGAAACGACAACGTTTTGATGATCATGATGATCATCATAACTTCTTTCAATATTTCCTTCCTCACCATGTTCCCCAACTACTCCCACAGCTTCCTTCTCCCTCTTCTCTTCAGAGGGAGCTGGGTGAAGAGGAGGCAGCGACGGAGGTGGAGGGTGGTGAAGGGAGGAGGTGGTTGGGCGGCGATGAGGGAACGACGGTGGCAGAGGAAGATGGAGAAACGACATGTCGTAATGGGACTTTAAGGACGTTGGAGTTGTTTCCGGTGAGAGCGAGTTGGGTGAACGAGGAAGAAGGGACGAGTGGAAACGGTGGATGGGGAATTAATGGAAAATAA

Protein sequence

MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLPSPSSLQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWVNEEEGTSGNGGWGINGK

Homology

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BLAST of PI0004143 vs. ExPASy Swiss-Prot
Match: Q9SIB4 (WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.5e-29
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 4   SSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHK 63
           S +  +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+FYG+IEGKNVFYWFQNHK
Sbjct: 2   SPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHK 61

Query: 64  ARDRQKLRRKLYKQL--QQHHFFMKRQRFDDHD--------------DHHNFFQYFLPHH 108
           ARDRQKLR+KL KQL  QQH   ++ Q+                   DHHN + +   +H
Sbjct: 62  ARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDHHNPYHHHHHNH 121

[Close]

BLAST of PI0004143 vs. ExPASy Swiss-Prot
Match: Q5W7C3 (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX2 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.4e-27
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 9   SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQ 68
           +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQ
Sbjct: 26  TRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQ 85

Query: 69  KLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQL-PSPSS 121
           KLRR+L      HH          H  HH+          PQLLP L PS SS
Sbjct: 86  KLRRRL---CISHHLLSCA-----HYYHHHLAAAAAVVPPPQLLPPLHPSSSS 130

[Close]

BLAST of PI0004143 vs. ExPASy Swiss-Prot
Match: A2XZR3 (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica OX=39946 GN=WOX2 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 9  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQ 68
          +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQ
Sbjct: 26 TRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQ 85

Query: 69 KLRRKL 75
          KLRR+L
Sbjct: 86 KLRRRL 91

[Close]

BLAST of PI0004143 vs. ExPASy Swiss-Prot
Match: A2ZH47 (WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. indica OX=39946 GN=WOX3 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 55/75 (73.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 7  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKAR 66
          TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL++YG+IEGKNVFYWFQNHKAR
Sbjct: 4  TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKAR 63

Query: 67 DRQKLRRKLYKQLQQ 81
          +RQ+LRR+L  + QQ
Sbjct: 64 ERQRLRRRLCARHQQ 78

[Close]

BLAST of PI0004143 vs. ExPASy Swiss-Prot
Match: Q33DK1 (WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX3 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 55/75 (73.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 7  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKAR 66
          TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL++YG+IEGKNVFYWFQNHKAR
Sbjct: 4  TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKAR 63

Query: 67 DRQKLRRKLYKQLQQ 81
          +RQ+LRR+L  + QQ
Sbjct: 64 ERQRLRRRLCARHQQ 78

[Close]

BLAST of PI0004143 vs. ExPASy TrEMBL
Match: A0A1S3CK69 (WUSCHEL-related homeobox 3 OS=Cucumis melo OX=3656 GN=LOC103501892 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.9e-100
Identity = 182/191 (95.29%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60
           MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ
Sbjct: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60

Query: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLPSPSS 120
           NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDD  DHH+FFQYFLPHHVPQLLPQLPSPSS
Sbjct: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDDHDHHHFFQYFLPHHVPQLLPQLPSPSS 120

Query: 121 LQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWVNE 180
           LQRELGEEEAATEVEGG GRRWLGGD+GTTVAEEDGETTC NG+LRTLELFPVR SWV E
Sbjct: 121 LQRELGEEEAATEVEGGGGRRWLGGDDGTTVAEEDGETTCGNGSLRTLELFPVRGSWVKE 180

Query: 181 EEGTSGNGGWG 192
           EEGTSGNGGWG
Sbjct: 181 EEGTSGNGGWG 191

[Close]

BLAST of PI0004143 vs. ExPASy TrEMBL
Match: A0A0A0KHT6 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G301060 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.8e-100
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60
           MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ
Sbjct: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60

Query: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHD-DHHNFFQYFLPHHVPQLLPQLPSPS 120
           NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDH  DHH+FFQYFLPHHVPQLLPQLPSPS
Sbjct: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHQHDHHHFFQYFLPHHVPQLLPQLPSPS 120

Query: 121 SLQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWVN 180
           SLQRE+GEEEAATEVEGG GRRW+GGDEGTTV EEDGETTC NGTLRTLELFPVRASWV 
Sbjct: 121 SLQREVGEEEAATEVEGGGGRRWMGGDEGTTVEEEDGETTCGNGTLRTLELFPVRASWVK 180

Query: 181 EEEGTSGNGGWG 192
           EEEGTSGNGGWG
Sbjct: 181 EEEGTSGNGGWG 192

[Close]

BLAST of PI0004143 vs. ExPASy TrEMBL
Match: A0A6J1FXP0 (putative WUSCHEL-related homeobox 2 OS=Cucurbita moschata OX=3662 GN=LOC111448632 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.4e-70
Identity = 147/195 (75.38%), Postives = 153/195 (78.46%), Query Frame = 0


Query: 1   MSP----SSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVF 60
           MSP    ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVF
Sbjct: 1   MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF 60

Query: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLP 120
           YWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQRFDD    H+FF  FL HH   L P LP
Sbjct: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD----HHFFHCFLQHHQRFLPPLLP 120

Query: 121 SPSSLQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRAS 180
            P+  Q E G E   TEVEG       GGD+G  V EED ETTC NGTLRTLELFPVRA 
Sbjct: 121 LPTHFQGE-GGEGRTTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVRAG 180

Query: 181 WVNEEEGTSGNGGWG 192
           WV EEEG SGNGGWG
Sbjct: 181 WVKEEEGGSGNGGWG 183

[Close]

BLAST of PI0004143 vs. ExPASy TrEMBL
Match: A0A6P6FR94 (WUSCHEL-related homeobox 3-like OS=Ziziphus jujuba OX=326968 GN=LOC107404843 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 2   SPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQN 61
           SPSS T SRWCPTPEQ+MILEE+YR G +TPNA+QIQ IT+HLSFYGKIEGKNVFYWFQN
Sbjct: 9   SPSSSTSSRWCPTPEQLMILEEMYRAGTRTPNASQIQQITAHLSFYGKIEGKNVFYWFQN 68

Query: 62  HKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLP---SP 121
           HKARDRQKLRRK+YKQLQQ       Q+   H  +H+F  Y      P    QL    SP
Sbjct: 69  HKARDRQKLRRKIYKQLQQ-------QQLLHHHQNHHFLGYSESPSAPAAFQQLACYNSP 128

Query: 122 SSLQRELGEEEAATEV 135
            S   ++G EEA+ ++
Sbjct: 129 VSHIPQVGVEEASPQL 137

[Close]

BLAST of PI0004143 vs. ExPASy TrEMBL
Match: A0A5D2ZWI0 (Homeobox domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A03G049700v1 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 6.8e-33
Identity = 101/206 (49.03%), Postives = 119/206 (57.77%), Query Frame = 0


Query: 9   SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQ 68
           SRWCPTPEQVMILEE+YR+G+KTPNATQIQ ITSHLSFYGKIEGKNVFYWFQNHKAR+RQ
Sbjct: 7   SRWCPTPEQVMILEEMYRSGVKTPNATQIQQITSHLSFYGKIEGKNVFYWFQNHKARERQ 66

Query: 69  KLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLPSPSSLQRELGEE 128
           KLRRKL KQLQ      ++Q F     HH F    LP    Q L    SP    +++G +
Sbjct: 67  KLRRKLSKQLQ----LQQQQLF-----HHYFDS--LPSPPFQHLSYYNSPPPFPQQVGVD 126

Query: 129 EAATEVEGGEGRRW-----------------LGGD-------EGTTVAEEDGETTCRNG- 188
           +AA   + G    W                  GGD          +++     TT   G 
Sbjct: 127 DAAAAAKQGMNYTWKLDVSERMDVDKSMMKIYGGDLLMMVDLSSPSLSSPCFFTTTTTGP 186

[Close]

BLAST of PI0004143 vs. NCBI nr
Match: XP_008463857.1 (PREDICTED: WUSCHEL-related homeobox 3 [Cucumis melo])

HSP 1 Score: 374.4 bits (960), Expect = 6.0e-100
Identity = 182/191 (95.29%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60
           MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ
Sbjct: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60

Query: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLPSPSS 120
           NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDD  DHH+FFQYFLPHHVPQLLPQLPSPSS
Sbjct: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDDHDHHHFFQYFLPHHVPQLLPQLPSPSS 120

Query: 121 LQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWVNE 180
           LQRELGEEEAATEVEGG GRRWLGGD+GTTVAEEDGETTC NG+LRTLELFPVR SWV E
Sbjct: 121 LQRELGEEEAATEVEGGGGRRWLGGDDGTTVAEEDGETTCGNGSLRTLELFPVRGSWVKE 180

Query: 181 EEGTSGNGGWG 192
           EEGTSGNGGWG
Sbjct: 181 EEGTSGNGGWG 191

[Close]

BLAST of PI0004143 vs. NCBI nr
Match: XP_004148244.1 (WUSCHEL-related homeobox 3 [Cucumis sativus] >KGN47336.1 hypothetical protein Csa_022936 [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 7.8e-100
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60
           MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ
Sbjct: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60

Query: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHD-DHHNFFQYFLPHHVPQLLPQLPSPS 120
           NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDH  DHH+FFQYFLPHHVPQLLPQLPSPS
Sbjct: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHQHDHHHFFQYFLPHHVPQLLPQLPSPS 120

Query: 121 SLQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWVN 180
           SLQRE+GEEEAATEVEGG GRRW+GGDEGTTV EEDGETTC NGTLRTLELFPVRASWV 
Sbjct: 121 SLQREVGEEEAATEVEGGGGRRWMGGDEGTTVEEEDGETTCGNGTLRTLELFPVRASWVK 180

Query: 181 EEEGTSGNGGWG 192
           EEEGTSGNGGWG
Sbjct: 181 EEEGTSGNGGWG 192

[Close]

BLAST of PI0004143 vs. NCBI nr
Match: XP_038902731.1 (WUSCHEL-related homeobox 3-like [Benincasa hispida])

HSP 1 Score: 318.9 bits (816), Expect = 3.0e-83
Identity = 165/190 (86.84%), Postives = 168/190 (88.42%), Query Frame = 0


Query: 1   MSPSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60
           MSPS ITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ
Sbjct: 1   MSPSGITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQ 60

Query: 61  NHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLPSPSS 120
           NHKARDRQKLRRKLYKQLQQHHF MKR RFD+H     FF YFLP HVPQLLP  PSPS 
Sbjct: 61  NHKARDRQKLRRKLYKQLQQHHFLMKRHRFDEHT---QFFHYFLPQHVPQLLP-FPSPSH 120

Query: 121 LQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWVNE 180
            Q+E GEEE ATEVEGG    W GGDEGTTVAEEDGETTCRNGTLRTLELFPVRASW+ E
Sbjct: 121 -QKE-GEEEPATEVEGGR-TTWFGGDEGTTVAEEDGETTCRNGTLRTLELFPVRASWMKE 180

Query: 181 EEGTSGNGGW 191
           EEGTSGNGGW
Sbjct: 181 EEGTSGNGGW 183

[Close]

BLAST of PI0004143 vs. NCBI nr
Match: XP_022944088.1 (putative WUSCHEL-related homeobox 2 [Cucurbita moschata])

HSP 1 Score: 275.0 bits (702), Expect = 4.9e-70
Identity = 147/195 (75.38%), Postives = 153/195 (78.46%), Query Frame = 0


Query: 1   MSP----SSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVF 60
           MSP    ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVF
Sbjct: 1   MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVF 60

Query: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQLP 120
           YWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQRFDD    H+FF  FL HH   L P LP
Sbjct: 61  YWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDD----HHFFHCFLQHHQRFLPPLLP 120

Query: 121 SPSSLQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRAS 180
            P+  Q E G E   TEVEG       GGD+G  V EED ETTC NGTLRTLELFPVRA 
Sbjct: 121 LPTHFQGE-GGEGRTTEVEG-------GGDDGMAVGEEDAETTCGNGTLRTLELFPVRAG 180

Query: 181 WVNEEEGTSGNGGWG 192
           WV EEEG SGNGGWG
Sbjct: 181 WVKEEEGGSGNGGWG 183

[Close]

BLAST of PI0004143 vs. NCBI nr
Match: KAG6570743.1 (WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.5 bits (685), Expect = 4.6e-68
Identity = 145/196 (73.98%), Postives = 150/196 (76.53%), Query Frame = 0


Query: 1   MSP---SSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFY 60
           MSP   ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFY
Sbjct: 1   MSPAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFY 60

Query: 61  WFQNHKARDRQKLRRKLYKQLQQHHFFMKRQRFDDHDDHHNFFQYFLPHHVPQLLPQ--L 120
           WFQNHKARDRQKLRRKLYKQLQQHHFF+KRQRFDDH   H F Q    HH  Q  P   L
Sbjct: 61  WFQNHKARDRQKLRRKLYKQLQQHHFFIKRQRFDDHHFFHCFLQQQQHHHHHQRFPPPLL 120

Query: 121 PSPSSLQRELGEEEAATEVEGGEGRRWLGGDEGTTVAEEDGETTCRNGTLRTLELFPVRA 180
           P P+  Q     E   TEVEG       GGD+G  V EED ETTCRNGTLRTLELFPVRA
Sbjct: 121 PLPTHFQ----GEGRTTEVEG-------GGDDGMAVGEEDAETTCRNGTLRTLELFPVRA 180

Query: 181 SWVNEEEGTSGNGGWG 192
            WV EEEG SGNGGWG
Sbjct: 181 GWVKEEEGGSGNGGWG 185

[Close]

BLAST of PI0004143 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-30
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 4   SSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHK 63
           S +  +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+FYG+IEGKNVFYWFQNHK
Sbjct: 2   SPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHK 61

Query: 64  ARDRQKLRRKLYKQL--QQHHFFMKRQRFDDHD--------------DHHNFFQYFLPHH 108
           ARDRQKLR+KL KQL  QQH   ++ Q+                   DHHN + +   +H
Sbjct: 62  ARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDHHNPYHHHHHNH 121

[Close]

BLAST of PI0004143 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 102.1 bits (253), Expect = 5.3e-22
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 3   PSSITPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNH 62
           P  +  SRW PTP+Q+ +LEE+YR G +TP+A  IQ IT+ L  YGKIEGKNVFYWFQNH
Sbjct: 69  PPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNH 128

Query: 63  KARDRQKLRRKL 75
           KAR+RQK RR++
Sbjct: 129 KARERQKRRRQM 140

[Close]

BLAST of PI0004143 vs. TAIR 10
Match: AT1G46480.1 (WUSCHEL related homeobox 4 )

HSP 1 Score: 98.6 bits (244), Expect = 5.9e-21
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 9   SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQ 68
           +RW PT EQ+ ILE +Y+ G++TPNA QI+HIT  L  YGKIEGKNVFYWFQNHKAR+RQ
Sbjct: 89  TRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQ 148

Query: 69  KLRR 73
           K +R
Sbjct: 149 KQKR 152

[Close]

BLAST of PI0004143 vs. TAIR 10
Match: AT2G01500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 8.5e-20
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 10  RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQK 69
           RW PTPEQ+  LEE+YR+G +TP   QIQ I S L  YG+IEGKNVFYWFQNHKAR+R K
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 120

Query: 70  LRRK 74
            RR+
Sbjct: 121 RRRR 124

[Close]

BLAST of PI0004143 vs. TAIR 10
Match: AT3G11260.1 (WUSCHEL related homeobox 5 )

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-19
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 10 RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQK 69
          RW PT EQ+ IL +++R GL+TP   QIQ I++ LSFYGKIE KNVFYWFQNHKAR+RQK
Sbjct: 24 RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83

Query: 70 LRRKLYKQLQQHH 83
           RRK+      HH
Sbjct: 84 -RRKISIDFDHHH 95

The following BLAST results are available for this feature:

BLAST of PI0004143 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIB4	7.5e-29	55.83	WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1	[more]
Q5W7C3	5.4e-27	61.06	Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
A2XZR3	7.0e-27	81.82	Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica OX=39946 GN=WO...	[more]
A2ZH47	1.6e-26	73.33	WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. indica OX=39946 GN=WOX3 PE=3 S...	[more]
Q33DK1	1.6e-26	73.33	WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX3 PE=1...	[more]

BLAST of PI0004143 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CK69	2.9e-100	95.29	WUSCHEL-related homeobox 3 OS=Cucumis melo OX=3656 GN=LOC103501892 PE=3 SV=1	[more]
A0A0A0KHT6	3.8e-100	95.31	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G301060 PE...	[more]
A0A6J1FXP0	2.4e-70	75.38	putative WUSCHEL-related homeobox 2 OS=Cucurbita moschata OX=3662 GN=LOC11144863...	[more]
A0A6P6FR94	3.0e-33	61.03	WUSCHEL-related homeobox 3-like OS=Ziziphus jujuba OX=326968 GN=LOC107404843 PE=...	[more]
A0A5D2ZWI0	6.8e-33	49.03	Homeobox domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A03...	[more]

BLAST of PI0004143 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463857.1	6.0e-100	95.29	PREDICTED: WUSCHEL-related homeobox 3 [Cucumis melo]	[more]
XP_004148244.1	7.8e-100	95.31	WUSCHEL-related homeobox 3 [Cucumis sativus] >KGN47336.1 hypothetical protein Cs...	[more]
XP_038902731.1	3.0e-83	86.84	WUSCHEL-related homeobox 3-like [Benincasa hispida]	[more]
XP_022944088.1	4.9e-70	75.38	putative WUSCHEL-related homeobox 2 [Cucurbita moschata]	[more]
KAG6570743.1	4.6e-68	73.98	WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of PI0004143 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28610.1	5.3e-30	55.83	Homeodomain-like superfamily protein	[more]
AT3G18010.1	5.3e-22	63.89	WUSCHEL related homeobox 1	[more]
AT1G46480.1	5.9e-21	68.75	WUSCHEL related homeobox 4	[more]
AT2G01500.1	8.5e-20	67.19	Homeodomain-like superfamily protein	[more]
AT3G11260.1	1.5e-19	63.01	WUSCHEL related homeobox 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 6..73 e-value: 4.6E-4 score: 27.5
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 9..68 e-value: 2.2E-17 score: 62.6
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 4..69 score: 9.620432
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 10..69 e-value: 3.06236E-4 score: 35.6821
None	No IPR available	GENE3D	1.10.10.60		coord: 3..69 e-value: 1.7E-8 score: 36.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..158
None	No IPR available	PANTHER	PTHR45940:SF24	WUSCHEL-RELATED HOMEOBOX 3	coord: 1..125
IPR044555	Protein WUSCHEL-like	PANTHER	PTHR45940	WUSCHEL-RELATED HOMEOBOX 1-RELATED	coord: 1..125
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 9..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004143.1	PI0004143.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity