PI0004126 (gene) Melon (PI 482460) v1

Overview
NamePI0004126
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description50S ribosomal protein L28
Locationchr06: 3194199 .. 3194887 (+)
RNA-Seq ExpressionPI0004126
SyntenyPI0004126
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTTCCGGTGTAATGACAACCTCCTCAACAAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGATTTCTCACTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTACTGCTCCTTTCAGACCTTCCCTTCAACCTATTGCTCGTAATATCCCCCTCTCTTCTCAACTCTCGTTTAATATTTTGCTATATTTCATTTGTTTAACTTCAACCCCTTTTTGGGCTCTACTTGAATTAATTGTATGGCTATGGCTGAAGCATTTTCTTTTTCAATTAGGTTTCCTAATTCACCCGTTATGTTCTGATTCCAATTTGGGCTACCTATAATTTGTAAATTGGGAACCATCTCAAACTTGGTGGATTCATTATTTGTTGTTTCAGGTAGAGTTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGA

mRNA sequence

ATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTTCCGGTGTAATGACAACCTCCTCAACAAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGATTTCTCACTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTACTGCTCCTTTCAGACCTTCCCTTCAACCTATTGCTCGTAGAGTTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGA

Coding sequence (CDS)

ATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTTCCGGTGTAATGACAACCTCCTCAACAAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGATTTCTCACTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTACTGCTCCTTTCAGACCTTCCCTTCAACCTATTGCTCGTAGAGTTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGA

Protein sequence

MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Homology
[Close]
BLAST of PI0004126 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-45
Identity = 91/122 (74.59%), Postives = 110/122 (90.16%), Query Frame = 0 

Query: 29  RTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKN 88
           ++K +S+L F+TSQLSG+KISS H + S +P+S  PF+PSLQP+ARR+CPFTGKK+N+ N
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLS-VPFKPSLQPVARRICPFTGKKSNRAN 90

Query: 89  LVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLR 148
            VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL 
Sbjct: 91  KVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLS 150

Query: 149 KE 151
           K+
Sbjct: 151 KK 151

[Close]
BLAST of PI0004126 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 102/147 (69.39%), Postives = 118/147 (80.27%), Query Frame = 0 

Query: 15  SSGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIKISSNHSL-ISPSPISTA 74
           +SG++ ++ + + FR        KP    S+LGFLTSQLSGI+IS +    I   PIS A
Sbjct: 3   ASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS-A 62

Query: 75  PFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRL 134
           P +PSLQP+ARR+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRL
Sbjct: 63  PLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRL 122

Query: 135 STKALKTIEKNGLDAVAKKAGIDLRKE 151
           STKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 123 STKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of PI0004126 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-42
Identity = 95/136 (69.85%), Postives = 110/136 (80.88%), Query Frame = 0 

Query: 19  MTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI---STAPFRPSLQPI-AR 78
           MT+S+  +   T  + +LGFLTSQLSG++IS      +PS +    + P  P +QPI AR
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRIS-----YTPSDVINRISLPSFPGIQPIVAR 72

Query: 79  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 138
           R+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKN
Sbjct: 73  RICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132

Query: 139 GLDAVAKKAGIDLRKE 151
           GLDAVAKKAGIDLRK+
Sbjct: 133 GLDAVAKKAGIDLRKK 143

[Close]
BLAST of PI0004126 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 75  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]
BLAST of PI0004126 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 75  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]
BLAST of PI0004126 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 144/150 (96.00%), Postives = 146/150 (97.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAATS+GVM TSSTKLHFRTKPNSDLGFL SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RPSLQPIARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of PI0004126 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 144/150 (96.00%), Postives = 146/150 (97.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAATS+GVM TSSTKLHFRTKPNSDLGFL SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RPSLQPIARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of PI0004126 vs. ExPASy TrEMBL
Match: A0A0A0L501 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.8e-71
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAAT SGVMTTSSTKLHFRTKPNSDLGFLTSQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAP RPSLQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of PI0004126 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 134/150 (89.33%), Postives = 140/150 (93.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MA S V GFTP  +SSGVM  SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAVSAVLGFTP-VSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of PI0004126 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.5e-61
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MA S V GFTP   SSGVM  SS+KLHFR+K N +LGFL+SQLSGIKISSNHSLIS SPI
Sbjct: 1   MAVSAVLGFTPVC-SSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of PI0004126 vs. NCBI nr
Match: XP_008438484.1 (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1 50S ribosomal protein L28 [Cucumis melo var. makuwa] >TYK17330.1 50S ribosomal protein L28 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 144/150 (96.00%), Postives = 146/150 (97.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAATS+GVM TSSTKLHFRTKPNSDLGFL SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RPSLQPIARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of PI0004126 vs. NCBI nr
Match: XP_004134049.1 (50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypothetical protein Csa_010318 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAAT SGVMTTSSTKLHFRTKPNSDLGFLTSQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAP RPSLQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of PI0004126 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.3e-64
Identity = 137/150 (91.33%), Postives = 141/150 (94.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MAA VV GFTP ATSSGVM  SSTKL F TKPNS+LGFLTSQL+GIKISSNHSLISPSPI
Sbjct: 1   MAAFVVLGFTP-ATSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of PI0004126 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 134/150 (89.33%), Postives = 140/150 (93.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MA S V GFTP  +SSGVM  SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAVSAVLGFTP-VSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of PI0004126 vs. NCBI nr
Match: XP_023526300.1 (50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 6.5e-62
Identity = 132/150 (88.00%), Postives = 138/150 (92.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI 60
           MA S V GFTP   SSGVM  SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLIS SPI
Sbjct: 1   MAVSAVLGFTPVC-SSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISSSPI 60

Query: 61  STAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S AP RP+LQP+ARRVCPFTGKKAN+KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANRKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of PI0004126 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-43
Identity = 95/136 (69.85%), Postives = 110/136 (80.88%), Query Frame = 0 

Query: 19  MTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI---STAPFRPSLQPI-AR 78
           MT+S+  +   T  + +LGFLTSQLSG++IS      +PS +    + P  P +QPI AR
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRIS-----YTPSDVINRISLPSFPGIQPIVAR 72

Query: 79  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 138
           R+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKN
Sbjct: 73  RICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132

Query: 139 GLDAVAKKAGIDLRKE 151
           GLDAVAKKAGIDLRK+
Sbjct: 133 GLDAVAKKAGIDLRKK 143

The following BLAST results are available for this feature:
BLAST of PI0004126 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P309561.2e-4574.5950S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P... [more]
P822452.8e-4469.3950S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P... [more]
O227955.9e-4269.8550S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
Q8DG623.7e-2064.0050S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972... [more]
B8HUV76.4e-2064.0050S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
BLAST of PI0004126 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1W63.7e-7196.0050S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AWK53.7e-7196.0050S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567... [more]
A0A0A0L5014.8e-7195.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1[more]
A0A6J1IT281.3e-6389.3350S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1E9163.5e-6187.3350S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of PI0004126 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438484.17.6e-7196.00PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1... [more]
XP_004134049.11.0e-7095.3350S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypotheti... [more]
XP_038885053.15.3e-6491.3350S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S... [more]
XP_022979375.12.6e-6389.3350S ribosomal protein L28, chloroplastic [Cucurbita maxima][more]
XP_023526300.16.5e-6288.0050S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of PI0004126 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33450.14.2e-4369.85Ribosomal L28 family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001383Ribosomal protein L28TIGRFAMTIGR00009TIGR00009coord: 75..130
e-value: 2.6E-16
score: 57.8
IPR001383Ribosomal protein L28HAMAPMF_00373Ribosomal_L28coord: 72..148
score: 14.042251
IPR037147Ribosomal protein L28/L24 superfamilyGENE3D2.30.170.40Ribosomal protein L28/L24coord: 74..150
e-value: 1.8E-28
score: 100.3
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 75..133
e-value: 1.2E-18
score: 67.0
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 22..150
NoneNo IPR availablePANTHERPTHR13528:SF650S RIBOSOMAL PROTEIN L28, CHLOROPLASTICcoord: 22..150
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 75..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004126.1PI0004126.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome