Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATGGCTAAATCGCAGAAGATTTATTGCTACGGGATGCTCGTTTGGGCAATTTGATGTTGATGTAACTCCAGAATACATCAATTGGTACAAAAATATTACCAGGTTCTATATCACTCAACCGGGAGCAGCTGTAGGTCATCTGGTACGTATTTAAATATTGTCTAATTGTTTTTAGTACAAATTAATTTTTAATAGTTTCTAATTAATTTTAATATTTCACAGAGGTCGAACAATAGTAGACTTCGGGATGTTGTAGATGATCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGGTACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACAAGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTGGTGACGTTAGTCCAATGATGATGATGCCGGCATTTGGAACAGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTGGGGACAGGATATTATAATTCAGAGGCAGGTCCATCGTCGTCAAACTTTGGACAAGGATACTATGATTTAGGGACCGATCCATCGTCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAACCACCTGCAGCGGTACCCGAGCAGCCAGATGAGCAACAACAAGAGAATCAGGAGGGACTAGAGCAACAAAGAGTGCATGGTCGACGACGGCAACCAGCAAGAAATCAGCGACGTCCAGGTTGTGGAACACATTGA
mRNA sequence
ATGCGATGGCTAAATCGCAGAAGATTTATTGCTACGGGATGCTCGTTTGGGCAATTTGATGTTGATGTAACTCCAGAATACATCAATTGGTACAAAAATATTACCAGGTTCTATATCACTCAACCGGGAGCAGCTGTAGGTCATCTGAGGTCGAACAATAGTAGACTTCGGGATGTTGTAGATGATCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGGTACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACAAGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTGGTGACGTTAGTCCAATGATGATGATGCCGGCATTTGGAACAGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTGGGGACAGGATATTATAATTCAGAGGCAGGTCCATCGTCGTCAAACTTTGGACAAGGATACTATGATTTAGGGACCGATCCATCGTCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAACCACCTGCAGCGGTACCCGAGCAGCCAGATGAGCAACAACAAGAGAATCAGGAGGGACTAGAGCAACAAAGAGTGCATGGTCGACGACGGCAACCAGCAAGAAATCAGCGACGTCCAGGTTGTGGAACACATTGA
Coding sequence (CDS)
ATGCGATGGCTAAATCGCAGAAGATTTATTGCTACGGGATGCTCGTTTGGGCAATTTGATGTTGATGTAACTCCAGAATACATCAATTGGTACAAAAATATTACCAGGTTCTATATCACTCAACCGGGAGCAGCTGTAGGTCATCTGAGGTCGAACAATAGTAGACTTCGGGATGTTGTAGATGATCCACAGCAGGTCCTAGATATATGCAACAATAACGAGCGGTACATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACAAGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTGGTGACGTTAGTCCAATGATGATGATGCCGGCATTTGGAACAGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTGGGGACAGGATATTATAATTCAGAGGCAGGTCCATCGTCGTCAAACTTTGGACAAGGATACTATGATTTAGGGACCGATCCATCGTCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAACCACCTGCAGCGGTACCCGAGCAGCCAGATGAGCAACAACAAGAGAATCAGGAGGGACTAGAGCAACAAAGAGTGCATGGTCGACGACGGCAACCAGCAAGAAATCAGCGACGTCCAGGTTGTGGAACACATTGA
Protein sequence
MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVVDDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPVRQTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDEQQQENQEGLEQQRVHGRRRQPARNQRRPGCGTH
Homology
BLAST of PI0004079 vs. ExPASy TrEMBL
Match:
A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)
HSP 1 Score: 377.5 bits (968), Expect = 4.3e-101
Identity = 193/262 (73.66%), Postives = 213/262 (81.30%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYINWYKNI++ YITQPGA + HLRSNN RLR+V
Sbjct: 366 MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVA 425
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPVR 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQEPD+LEEV+Q +EVPP+
Sbjct: 426 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 485
Query: 121 QTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGTDP 180
QTQS VSP+MMMP FGT YYDS VGQSSD G GYYNSEAG SS++FGQ YYDLG+DP
Sbjct: 486 QTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDP 545
Query: 181 SSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGLEQ 240
SSSYMHGHGRGRGEHNEYLYYE PAAVPEQ +E QQQENQE ++Q
Sbjct: 546 SSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQ 605
Query: 241 QRVHGRRRQPARNQRRPGCGTH 247
QRV RRRQPARN+RRPGCGTH
Sbjct: 606 QRVQSRRRQPARNRRRPGCGTH 627
BLAST of PI0004079 vs. ExPASy TrEMBL
Match:
A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)
HSP 1 Score: 376.7 bits (966), Expect = 7.3e-101
Identity = 192/262 (73.28%), Postives = 214/262 (81.68%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN RLR+V
Sbjct: 1014 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 1073
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPVR 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQEPD+LEEV+Q +EVPP+
Sbjct: 1074 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 1133
Query: 121 QTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGTDP 180
QTQS VSP+MMMP FGT YYDSGVGQSSD G GYYNS+AG SS++FGQ YYDLG+DP
Sbjct: 1134 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 1193
Query: 181 SSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGLEQ 240
SSSYMHGHGRGRG+HNEYLYYE PAAVPEQ DE QQQEN E ++Q
Sbjct: 1194 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 1253
Query: 241 QRVHGRRRQPARNQRRPGCGTH 247
QRV RRRQPARN+RRPGCGTH
Sbjct: 1254 QRVQSRRRQPARNRRRPGCGTH 1275
BLAST of PI0004079 vs. ExPASy TrEMBL
Match:
A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)
HSP 1 Score: 376.7 bits (966), Expect = 7.3e-101
Identity = 192/262 (73.28%), Postives = 214/262 (81.68%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN RLR+V
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 312
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPVR 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQEPD+LEEV+Q +EVPP+
Sbjct: 313 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 372
Query: 121 QTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGTDP 180
QTQS VSP+MMMP FGT YYDSGVGQSSD G GYYNS+AG SS++FGQ YYDLG+DP
Sbjct: 373 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 432
Query: 181 SSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGLEQ 240
SSSYMHGHGRGRG+HNEYLYYE PAAVPEQ DE QQQEN E ++Q
Sbjct: 433 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 492
Query: 241 QRVHGRRRQPARNQRRPGCGTH 247
QRV RRRQPARN+RRPGCGTH
Sbjct: 493 QRVQSRRRQPARNRRRPGCGTH 514
BLAST of PI0004079 vs. ExPASy TrEMBL
Match:
A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)
HSP 1 Score: 360.9 bits (925), Expect = 4.2e-96
Identity = 187/264 (70.83%), Postives = 212/264 (80.30%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN+RLR++
Sbjct: 744 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 803
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPV- 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQE D+LEEV+Q +EVPP+
Sbjct: 804 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 863
Query: 121 -RQTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGT 180
QTQS VSP+MMMP FG YYDSGVGQSSD G GYYNSEAG SS++FGQ YYDLG+
Sbjct: 864 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 923
Query: 181 DPSSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGL 240
DPSSSYMHGHGRGRGEHNEYLYY+ PAAVPEQ DE QQQEN E +
Sbjct: 924 DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 983
Query: 241 EQQRVHGRRRQPARNQRRPGCGTH 247
+QQRV RRRQ A+N++RPGCGTH
Sbjct: 984 QQQRVQIRRRQLAKNRQRPGCGTH 1007
BLAST of PI0004079 vs. ExPASy TrEMBL
Match:
A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)
HSP 1 Score: 360.9 bits (925), Expect = 4.2e-96
Identity = 187/264 (70.83%), Postives = 212/264 (80.30%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN+RLR++
Sbjct: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPV- 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQE D+LEEV+Q +EVPP+
Sbjct: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120
Query: 121 -RQTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGT 180
QTQS VSP+MMMP FG YYDSGVGQSSD G GYYNSEAG SS++FGQ YYDLG+
Sbjct: 121 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 180
Query: 181 DPSSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGL 240
DPSSSYMHGHGRGRGEHNEYLYY+ PAAVPEQ DE QQQEN E +
Sbjct: 181 DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 240
Query: 241 EQQRVHGRRRQPARNQRRPGCGTH 247
+QQRV RRRQ A+N++RPGCGTH
Sbjct: 241 QQQRVQIRRRQLAKNRQRPGCGTH 264
BLAST of PI0004079 vs. NCBI nr
Match:
KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 377.5 bits (968), Expect = 8.9e-101
Identity = 193/262 (73.66%), Postives = 213/262 (81.30%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYINWYKNI++ YITQPGA + HLRSNN RLR+V
Sbjct: 366 MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVA 425
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPVR 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQEPD+LEEV+Q +EVPP+
Sbjct: 426 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 485
Query: 121 QTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGTDP 180
QTQS VSP+MMMP FGT YYDS VGQSSD G GYYNSEAG SS++FGQ YYDLG+DP
Sbjct: 486 QTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDP 545
Query: 181 SSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGLEQ 240
SSSYMHGHGRGRGEHNEYLYYE PAAVPEQ +E QQQENQE ++Q
Sbjct: 546 SSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQ 605
Query: 241 QRVHGRRRQPARNQRRPGCGTH 247
QRV RRRQPARN+RRPGCGTH
Sbjct: 606 QRVQSRRRQPARNRRRPGCGTH 627
BLAST of PI0004079 vs. NCBI nr
Match:
KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 376.7 bits (966), Expect = 1.5e-100
Identity = 192/262 (73.28%), Postives = 214/262 (81.68%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN RLR+V
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 312
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPVR 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQEPD+LEEV+Q +EVPP+
Sbjct: 313 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 372
Query: 121 QTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGTDP 180
QTQS VSP+MMMP FGT YYDSGVGQSSD G GYYNS+AG SS++FGQ YYDLG+DP
Sbjct: 373 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 432
Query: 181 SSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGLEQ 240
SSSYMHGHGRGRG+HNEYLYYE PAAVPEQ DE QQQEN E ++Q
Sbjct: 433 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 492
Query: 241 QRVHGRRRQPARNQRRPGCGTH 247
QRV RRRQPARN+RRPGCGTH
Sbjct: 493 QRVQSRRRQPARNRRRPGCGTH 514
BLAST of PI0004079 vs. NCBI nr
Match:
TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 376.7 bits (966), Expect = 1.5e-100
Identity = 192/262 (73.28%), Postives = 214/262 (81.68%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN RLR+V
Sbjct: 1014 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 1073
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPVR 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQEPD+LEEV+Q +EVPP+
Sbjct: 1074 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 1133
Query: 121 QTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGTDP 180
QTQS VSP+MMMP FGT YYDSGVGQSSD G GYYNS+AG SS++FGQ YYDLG+DP
Sbjct: 1134 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 1193
Query: 181 SSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGLEQ 240
SSSYMHGHGRGRG+HNEYLYYE PAAVPEQ DE QQQEN E ++Q
Sbjct: 1194 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 1253
Query: 241 QRVHGRRRQPARNQRRPGCGTH 247
QRV RRRQPARN+RRPGCGTH
Sbjct: 1254 QRVQSRRRQPARNRRRPGCGTH 1275
BLAST of PI0004079 vs. NCBI nr
Match:
XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])
HSP 1 Score: 360.9 bits (925), Expect = 8.6e-96
Identity = 187/264 (70.83%), Postives = 212/264 (80.30%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN+RLR++
Sbjct: 1 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPV- 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQE D+LEEV+Q +EVPP+
Sbjct: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120
Query: 121 -RQTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGT 180
QTQS VSP+MMMP FG YYDSGVGQSSD G GYYNSEAG SS++FGQ YYDLG+
Sbjct: 121 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 180
Query: 181 DPSSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGL 240
DPSSSYMHGHGRGRGEHNEYLYY+ PAAVPEQ DE QQQEN E +
Sbjct: 181 DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 240
Query: 241 EQQRVHGRRRQPARNQRRPGCGTH 247
+QQRV RRRQ A+N++RPGCGTH
Sbjct: 241 QQQRVQIRRRQLAKNRQRPGCGTH 264
BLAST of PI0004079 vs. NCBI nr
Match:
TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 360.9 bits (925), Expect = 8.6e-96
Identity = 187/264 (70.83%), Postives = 212/264 (80.30%), Query Frame = 0
Query: 1 MRWLNRRRFIATGCSFGQFDVDVTPEYINWYKNITRFYITQPGAAVGHLRSNNSRLRDVV 60
MRW NRRRF ATG QFD+DVT EYI+WYKNI++ YITQPGAA+ HLRSNN+RLR++
Sbjct: 744 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 803
Query: 61 DDPQQVLDICNNNERYMENIHYMYDVPIVPAPVQRRRARVQEPDELEEVEQQVQEVPPV- 120
DDPQQVL+ICN+NE+YMENIHYMYDVPIVPAPVQRRR VQE D+LEEV+Q +EVPP+
Sbjct: 804 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 863
Query: 121 -RQTQSGTGDVSPMMMMPAFGTGYYDSGVGQSSDLGTGYYNSEAGPSSSNFGQGYYDLGT 180
QTQS VSP+MMMP FG YYDSGVGQSSD G GYYNSEAG SS++FGQ YYDLG+
Sbjct: 864 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 923
Query: 181 DPSSSYMHGHGRGRGEHNEYLYYEPPAAVPEQPDE----------------QQQENQEGL 240
DPSSSYMHGHGRGRGEHNEYLYY+ PAAVPEQ DE QQQEN E +
Sbjct: 924 DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 983
Query: 241 EQQRVHGRRRQPARNQRRPGCGTH 247
+QQRV RRRQ A+N++RPGCGTH
Sbjct: 984 QQQRVQIRRRQLAKNRQRPGCGTH 1007
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VIP6 | 4.3e-101 | 73.66 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BAB0 | 7.3e-101 | 73.28 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7T598 | 7.3e-101 | 73.28 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5D3DUI1 | 4.2e-96 | 70.83 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A1S3BLK4 | 4.2e-96 | 70.83 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067080.1 | 8.9e-101 | 73.66 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0036767.1 | 1.5e-100 | 73.28 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| TYJ95836.1 | 1.5e-100 | 73.28 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| XP_008449513.1 | 8.6e-96 | 70.83 | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... | [more] |
| TYK27427.1 | 8.6e-96 | 70.83 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
