Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAATTCAAAGGAGACGTGCTCGAGTGCAAGAGCCCGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTAGTGACGTTAGTCCAATGATGATGATGCCTGCATTTGGAACGGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAGAGGCAGGTCCATCATCGTCAAACTTTGGACAAGGATATTACGATTTAGGGACCGATCCATCATCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAATCGCCTGCACCAGTACTCGAGCAGCCAGATGAGCAACAACAACAAGAGAATAAGGAGGGACTAGAGCAACAAAGAGTGTAA
mRNA sequence
ATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAATTCAAAGGAGACGTGCTCGAGTGCAAGAGCCCGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTAGTGACGTTAGTCCAATGATGATGATGCCTGCATTTGGAACGGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAGAGGCAGGTCCATCATCGTCAAACTTTGGACAAGGATATTACGATTTAGGGACCGATCCATCATCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAATCGCCTGCACCAGTACTCGAGCAGCCAGATGAGCAACAACAACAAGAGAATAAGGAGGGACTAGAGCAACAAAGAGTGTAA
Coding sequence (CDS)
ATGGAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAATTCAAAGGAGACGTGCTCGAGTGCAAGAGCCCGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTAGTGACGTTAGTCCAATGATGATGATGCCTGCATTTGGAACGGGATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTCGGGACAGGATATTATAATTCAGAGGCAGGTCCATCATCGTCAAACTTTGGACAAGGATATTACGATTTAGGGACCGATCCATCATCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAATCGCCTGCACCAGTACTCGAGCAGCCAGATGAGCAACAACAACAAGAGAATAAGGAGGGACTAGAGCAACAAAGAGTGTAA
Protein sequence
MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMPAFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHNEYLYYESPAPVLEQPDEQQQQENKEGLEQQRV
Homology
BLAST of PI0004031 vs. ExPASy TrEMBL
Match:
A0A5A7U731 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00130 PE=4 SV=1)
HSP 1 Score: 233.0 bits (593), Expect = 8.1e-58
Identity = 122/152 (80.26%), Postives = 136/152 (89.47%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
++NI+YMYDVPIVPAPIQRRRA VQE DELEEV+QH++EVPPV QT+S TS VSPM+MM
Sbjct: 271 IDNIYYMYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMS 330
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
AFGTGYYD GV QSSDFGTGYYN GPSSSNFGQ YYDLGT+PSSSYMHGHGRGRGEHN
Sbjct: 331 AFGTGYYDPGVSQSSDFGTGYYNL-TGPSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHN 390
Query: 121 EYLYYESPAPVLEQPDEQQQQENKEGLEQQRV 153
EYLYY +PA V E+P+EQQQQEN+E L+QQRV
Sbjct: 391 EYLYYVAPAAVSEEPNEQQQQENQEELQQQRV 421
BLAST of PI0004031 vs. ExPASy TrEMBL
Match:
A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 122/167 (73.05%), Postives = 135/167 (80.84%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
MENIHYMYDVPIVPAP+QRRR VQEPD+LEEV+QH +EVPP+ QTQS + VSP+MMMP
Sbjct: 591 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 650
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
FGT YYDSGVGQSSDFG GYYNSEAG SS++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 651 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 710
Query: 121 EYLYYESPAPVLE---------------QPDEQQQQENKEGLEQQRV 153
EYLYYE PA V E Q DEQQQQEN+E ++QQRV
Sbjct: 711 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 757
BLAST of PI0004031 vs. ExPASy TrEMBL
Match:
A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 3.4e-56
Identity = 121/167 (72.46%), Postives = 135/167 (80.84%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
MENIHYMYDVPIVPAP+QRRR VQEPD+LEEV+QH +EVPP+ QT+S + VSP+MMMP
Sbjct: 599 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMP 658
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
FGT YYDSGVGQSSDFG GYYNSEAG SS++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 659 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 718
Query: 121 EYLYYESPAPVLEQPDE---------------QQQQENKEGLEQQRV 153
EYLYYE PA V EQ DE QQQQEN+E ++QQRV
Sbjct: 719 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEEIQQQRV 765
BLAST of PI0004031 vs. ExPASy TrEMBL
Match:
A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 9.9e-56
Identity = 121/167 (72.46%), Postives = 134/167 (80.24%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
MENIHYMYDVPIVPAP+QRRR VQEPD+LEEV+QH +EVPP+ QTQS + VSP+MMMP
Sbjct: 442 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 501
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
FGT YYDS VGQSSDFG GYYNSEAG SS++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 502 TFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 561
Query: 121 EYLYYESPAPVLE---------------QPDEQQQQENKEGLEQQRV 153
EYLYYE PA V E Q DEQQQQEN+E ++QQRV
Sbjct: 562 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 608
BLAST of PI0004031 vs. ExPASy TrEMBL
Match:
A0A5A7U9Y2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00310 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 1.7e-55
Identity = 120/152 (78.95%), Postives = 131/152 (86.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
+ENIHYMYDVPIV APIQRRR+ VQE D+LEEV+QH +EVPPV QTQS VSP+MMM
Sbjct: 114 IENIHYMYDVPIVHAPIQRRRSLVQESDQLEEVDQHGEEVPPVTQTQSKHGYVSPVMMMQ 173
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
AF T YYDSGVGQSSDFGTGYYNSEAGPSSSNF Q Y DLG+D SSSYMH HGRGRGEHN
Sbjct: 174 AFETTYYDSGVGQSSDFGTGYYNSEAGPSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHN 233
Query: 121 EYLYYESPAPVLEQPDEQQQQENKEGLEQQRV 153
EYLYYE PA +LEQ DEQQQQEN+E ++QQRV
Sbjct: 234 EYLYYEVPAAILEQLDEQQQQENQEEIQQQRV 265
BLAST of PI0004031 vs. NCBI nr
Match:
KAA0051098.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK02687.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 122/152 (80.26%), Postives = 136/152 (89.47%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
++NI+YMYDVPIVPAPIQRRRA VQE DELEEV+QH++EVPPV QT+S TS VSPM+MM
Sbjct: 271 IDNIYYMYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMS 330
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
AFGTGYYD GV QSSDFGTGYYN GPSSSNFGQ YYDLGT+PSSSYMHGHGRGRGEHN
Sbjct: 331 AFGTGYYDPGVSQSSDFGTGYYNL-TGPSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHN 390
Query: 121 EYLYYESPAPVLEQPDEQQQQENKEGLEQQRV 153
EYLYY +PA V E+P+EQQQQEN+E L+QQRV
Sbjct: 391 EYLYYVAPAAVSEEPNEQQQQENQEELQQQRV 421
BLAST of PI0004031 vs. NCBI nr
Match:
KAA0034013.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 229.2 bits (583), Expect = 2.4e-56
Identity = 122/167 (73.05%), Postives = 135/167 (80.84%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
MENIHYMYDVPIVPAP+QRRR VQEPD+LEEV+QH +EVPP+ QTQS + VSP+MMMP
Sbjct: 591 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 650
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
FGT YYDSGVGQSSDFG GYYNSEAG SS++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 651 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 710
Query: 121 EYLYYESPAPVLE---------------QPDEQQQQENKEGLEQQRV 153
EYLYYE PA V E Q DEQQQQEN+E ++QQRV
Sbjct: 711 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 757
BLAST of PI0004031 vs. NCBI nr
Match:
KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 227.6 bits (579), Expect = 7.0e-56
Identity = 121/167 (72.46%), Postives = 135/167 (80.84%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
MENIHYMYDVPIVPAP+QRRR VQEPD+LEEV+QH +EVPP+ QT+S + VSP+MMMP
Sbjct: 599 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMP 658
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
FGT YYDSGVGQSSDFG GYYNSEAG SS++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 659 TFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 718
Query: 121 EYLYYESPAPVLEQPDE---------------QQQQENKEGLEQQRV 153
EYLYYE PA V EQ DE QQQQEN+E ++QQRV
Sbjct: 719 EYLYYEVPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEEIQQQRV 765
BLAST of PI0004031 vs. NCBI nr
Match:
KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 121/167 (72.46%), Postives = 134/167 (80.24%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
MENIHYMYDVPIVPAP+QRRR VQEPD+LEEV+QH +EVPP+ QTQS + VSP+MMMP
Sbjct: 442 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMP 501
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
FGT YYDS VGQSSDFG GYYNSEAG SS++FGQ YYDLG+DPSSSYMHGHGRGRGEHN
Sbjct: 502 TFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHN 561
Query: 121 EYLYYESPAPVLE---------------QPDEQQQQENKEGLEQQRV 153
EYLYYE PA V E Q DEQQQQEN+E ++QQRV
Sbjct: 562 EYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 608
BLAST of PI0004031 vs. NCBI nr
Match:
KAA0051227.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 225.3 bits (573), Expect = 3.5e-55
Identity = 120/152 (78.95%), Postives = 131/152 (86.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPIQRRRARVQEPDELEEVEQHVQEVPPVRQTQSGTSDVSPMMMMP 60
+ENIHYMYDVPIV APIQRRR+ VQE D+LEEV+QH +EVPPV QTQS VSP+MMM
Sbjct: 114 IENIHYMYDVPIVHAPIQRRRSLVQESDQLEEVDQHGEEVPPVTQTQSKHGYVSPVMMMQ 173
Query: 61 AFGTGYYDSGVGQSSDFGTGYYNSEAGPSSSNFGQGYYDLGTDPSSSYMHGHGRGRGEHN 120
AF T YYDSGVGQSSDFGTGYYNSEAGPSSSNF Q Y DLG+D SSSYMH HGRGRGEHN
Sbjct: 174 AFETTYYDSGVGQSSDFGTGYYNSEAGPSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHN 233
Query: 121 EYLYYESPAPVLEQPDEQQQQENKEGLEQQRV 153
EYLYYE PA +LEQ DEQQQQEN+E ++QQRV
Sbjct: 234 EYLYYEVPAAILEQLDEQQQQENQEEIQQQRV 265
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U731 | 8.1e-58 | 80.26 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7SU33 | 1.2e-56 | 73.05 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7UKC7 | 3.4e-56 | 72.46 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7VIP6 | 9.9e-56 | 72.46 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7U9Y2 | 1.7e-55 | 78.95 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051098.1 | 1.7e-57 | 80.26 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0034013.1 | 2.4e-56 | 73.05 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0055624.1 | 7.0e-56 | 72.46 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0067080.1 | 2.0e-55 | 72.46 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0051227.1 | 3.5e-55 | 78.95 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
