PI0003956 (gene) Melon (PI 482460) v1

Overview
NamePI0003956
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionglycine-rich cell wall structural protein 1-like
Locationchr09: 1487716 .. 1488692 (-)
RNA-Seq ExpressionPI0003956
SyntenyPI0003956
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGTAGTTCCTTCCAATCATCTTTTAAAAGTCCCAACACAAAAAGCTTCAACTTTTATTGCATCAATGGCATCCCAACAATGCACCAAGCCAGCTGCTTATGAGCATGGTCAGCACCAGCAGAAGCATGACCAACAACACGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAAATCAAGGGCGTCTTCAAAGGCCACCATCACGACCAGGCTCCACCGGCATCGGGCGTGGTATACCACTCTGCCAATGACAGCCACTGCAAGGCAAGTGGGTCAAAGAAGAAGAAGGAACACCAAAAGAATAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGACAATGAATGTCACAAACCCCATCACAATAAAAAGGTAAGTTTGATTTTGTTCGTTCTAATTTCTCTGATTTATAATTTCATTTCGGATTTAACTACTATTGTGAAATAAAATTTACCAAGTGTTAGATTATTTAATTACTTGCCAAAACATGAGTTGTACATTTAGTTTTAGCATGTTAACAACAGTTCGTGATAGCAGTAACTGTTGATTTTAATATATAGTGATAGTAGCTGTTCAACGACCATGTTTTAATAGGATCTGGTGCATTGTCATTGGTATCTTTTCGTAATATTTTTGTTTTGATTTCTATTTCTCTTTTCTTTCGTTATGTAATTCTACATAACTTTGGCCTGGATTTGCAGAAATGAATGGAGAGAAGGAAGGTGAATCGATTGAAGGAAAAGTGTGGATGCCTCTAAACTAGCTACTGCTACTATGAATTTGGTGAAGCAAAAATAAAGATACGGTGTTGGATAAAGATGATAATTTATGAGACTTTACTGTACCTATTTCTTCTTTGAAATAAACTTCTGTATTCCTATCCTTGTTATCGATATAAAAAGTATGTTATAAACTAGATTCTACGGATCGTTGTTAGT

mRNA sequence

CAAGTAGTTCCTTCCAATCATCTTTTAAAAGTCCCAACACAAAAAGCTTCAACTTTTATTGCATCAATGGCATCCCAACAATGCACCAAGCCAGCTGCTTATGAGCATGGTCAGCACCAGCAGAAGCATGACCAACAACACGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAAATCAAGGGCGTCTTCAAAGGCCACCATCACGACCAGGCTCCACCGGCATCGGGCGTGGTATACCACTCTGCCAATGACAGCCACTGCAAGGCAAGTGGGTCAAAGAAGAAGAAGGAACACCAAAAGAATAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGACAATGAATGTCACAAACCCCATCACAATAAAAAGAAATGAATGGAGAGAAGGAAGGTGAATCGATTGAAGGAAAAGTGTGGATGCCTCTAAACTAGCTACTGCTACTATGAATTTGGTGAAGCAAAAATAAAGATACGGTGTTGGATAAAGATGATAATTTATGAGACTTTACTGTACCTATTTCTTCTTTGAAATAAACTTCTGTATTCCTATCCTTGTTATCGATATAAAAAGTATGTTATAAACTAGATTCTACGGATCGTTGTTAGT

Coding sequence (CDS)

ATGGCATCCCAACAATGCACCAAGCCAGCTGCTTATGAGCATGGTCAGCACCAGCAGAAGCATGACCAACAACACGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAAATCAAGGGCGTCTTCAAAGGCCACCATCACGACCAGGCTCCACCGGCATCGGGCGTGGTATACCACTCTGCCAATGACAGCCACTGCAAGGCAAGTGGGTCAAAGAAGAAGAAGGAACACCAAAAGAATAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGACAATGAATGTCACAAACCCCATCACAATAAAAAGAAATGA

Protein sequence

MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVFKGHHHDQAPPASGVVYHSANDSHCKASGSKKKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHHNKKK
Homology
BLAST of PI0003956 vs. ExPASy TrEMBL
Match: A0A1S3AUH3 (uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.3e-51
Identity = 105/117 (89.74%), Postives = 108/117 (92.31%), Query Frame = 0

Query: 1   MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVF-KGHHHDQAPPASGVVYH 60
           MA QQCTKPA + HGQHQQKHDQQHDHHCFGGHVSDKIKGVF KGHHHDQA PASG V+H
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  SANDSHCKASGSKKKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHHNKKK 117
           SANDSHCK SGSKKKKEHQ  KEGGLLHKIKEAFSDHSSDSSDS+NECHKPHHNKKK
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117

BLAST of PI0003956 vs. ExPASy TrEMBL
Match: A0A5A7TMV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001930 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.8e-32
Identity = 73/84 (86.90%), Postives = 75/84 (89.29%), Query Frame = 0

Query: 1  MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVF-KGHHHDQAPPASGVVYH 60
          MA QQCTKPA + HGQHQQKHDQQHDHHCFGGHVSDKIKGVF KGHHHDQA PASG V+H
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 SANDSHCKASGSKKKKEHQKNKEG 84
          SANDSHCK SGSKKKKEHQ  KEG
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEG 84

BLAST of PI0003956 vs. ExPASy TrEMBL
Match: A0A6J1CWW2 (uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015315 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 0

Query: 1   MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVFKGH-HHDQAPPASGVVYH 60
           MAS QC+KPA  +H Q+ QKHDQ    HCF GHVSDKIKGVFKGH HH QAP A+   +H
Sbjct: 1   MASLQCSKPADQQHSQN-QKHDQ---GHCF-GHVSDKIKGVFKGHGHHGQAPGAA--PHH 60

Query: 61  SAN-DSHCKASGSKKKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHHNKKK 117
           S N +++  AS S K+KE  KNK+G LLHKIK+AFSDHSSDSSDSDNE HK H   KK
Sbjct: 61  STNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSKK 111

BLAST of PI0003956 vs. ExPASy TrEMBL
Match: A0A6J1H399 (glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459722 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 48/100 (48.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query: 25  HDHHCFGGHVSDKIKGVFKGHHH--------DQAPPASGVVYH----SANDSHCKASGSK 84
           HDH   GGH      G   GH H            PA+  V H    S N  HCKA GS 
Sbjct: 435 HDHGQAGGHG----HGPAGGHGHCMPANPNIGHCQPANPNVGHCQPASPNVGHCKAGGS- 494

Query: 85  KKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHH 113
           +KK H KNKEGG L+KIK+AFSDH SD+SDSD++C +  H
Sbjct: 495 RKKGHHKNKEGGFLNKIKDAFSDH-SDNSDSDDDCRRGRH 528

BLAST of PI0003956 vs. NCBI nr
Match: XP_008437383.1 (PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 105/117 (89.74%), Postives = 108/117 (92.31%), Query Frame = 0

Query: 1   MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVF-KGHHHDQAPPASGVVYH 60
           MA QQCTKPA + HGQHQQKHDQQHDHHCFGGHVSDKIKGVF KGHHHDQA PASG V+H
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  SANDSHCKASGSKKKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHHNKKK 117
           SANDSHCK SGSKKKKEHQ  KEGGLLHKIKEAFSDHSSDSSDS+NECHKPHHNKKK
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117

BLAST of PI0003956 vs. NCBI nr
Match: XP_038875375.1 (uncharacterized protein LOC120067846 [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 4.9e-41
Identity = 93/115 (80.87%), Postives = 99/115 (86.09%), Query Frame = 0

Query: 1   MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVFKGHHHDQAPPASGVVYHS 60
           MAS QC KPA ++    QQKHDQQH HHCFGGHVSDKIKGVFKGHHH QAP AS  V+HS
Sbjct: 1   MASLQCNKPADHD----QQKHDQQH-HHCFGGHVSDKIKGVFKGHHHGQAPLASAPVHHS 60

Query: 61  ANDSHCKASGSKKKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHHNKK 116
           AN SHCK +GSKKKKEH KNKEGGLLHKIK+AFSDHSSDSSDS+NEC KPHHNKK
Sbjct: 61  ANASHCKPTGSKKKKEHHKNKEGGLLHKIKDAFSDHSSDSSDSENECDKPHHNKK 110

BLAST of PI0003956 vs. NCBI nr
Match: KAA0042689.1 (uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK06092.1 uncharacterized protein E5676_scaffold376G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 73/84 (86.90%), Postives = 75/84 (89.29%), Query Frame = 0

Query: 1  MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVF-KGHHHDQAPPASGVVYH 60
          MA QQCTKPA + HGQHQQKHDQQHDHHCFGGHVSDKIKGVF KGHHHDQA PASG V+H
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 SANDSHCKASGSKKKKEHQKNKEG 84
          SANDSHCK SGSKKKKEHQ  KEG
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEG 84

BLAST of PI0003956 vs. NCBI nr
Match: XP_022146004.1 (uncharacterized protein LOC111015315 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-23
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 0

Query: 1   MASQQCTKPAAYEHGQHQQKHDQQHDHHCFGGHVSDKIKGVFKGH-HHDQAPPASGVVYH 60
           MAS QC+KPA  +H Q+ QKHDQ    HCF GHVSDKIKGVFKGH HH QAP A+   +H
Sbjct: 1   MASLQCSKPADQQHSQN-QKHDQ---GHCF-GHVSDKIKGVFKGHGHHGQAPGAA--PHH 60

Query: 61  SAN-DSHCKASGSKKKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHHNKKK 117
           S N +++  AS S K+KE  KNK+G LLHKIK+AFSDHSSDSSDSDNE HK H   KK
Sbjct: 61  STNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSKK 111

BLAST of PI0003956 vs. NCBI nr
Match: XP_022958513.1 (glycine-rich cell wall structural protein 1-like [Cucurbita moschata])

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-06
Identity = 48/100 (48.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query: 25  HDHHCFGGHVSDKIKGVFKGHHH--------DQAPPASGVVYH----SANDSHCKASGSK 84
           HDH   GGH      G   GH H            PA+  V H    S N  HCKA GS 
Sbjct: 435 HDHGQAGGHG----HGPAGGHGHCMPANPNIGHCQPANPNVGHCQPASPNVGHCKAGGS- 494

Query: 85  KKKEHQKNKEGGLLHKIKEAFSDHSSDSSDSDNECHKPHH 113
           +KK H KNKEGG L+KIK+AFSDH SD+SDSD++C +  H
Sbjct: 495 RKKGHHKNKEGGFLNKIKDAFSDH-SDNSDSDDDCRRGRH 528

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AUH37.3e-5189.74uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=... [more]
A0A5A7TMV45.8e-3286.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CWW21.0e-2365.25uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1H3991.9e-0648.00glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 G... [more]
Match NameE-valueIdentityDescription
XP_008437383.11.5e-5089.74PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo][more]
XP_038875375.14.9e-4180.87uncharacterized protein LOC120067846 [Benincasa hispida][more]
KAA0042689.11.2e-3186.90uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK0... [more]
XP_022146004.12.1e-2365.25uncharacterized protein LOC111015315 [Momordica charantia][more]
XP_022958513.13.9e-0648.00glycine-rich cell wall structural protein 1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003956.1PI0003956.1mRNA