PI0003950 (gene) Melon (PI 482460) v1

Overview


Name	PI0003950
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SOSS complex subunit B-like protein
Location	chr02: 747118 .. 749016 (+)
RNA-Seq Expression	PI0003950
Synteny	PI0003950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTATTTTTGGTAACTGTAGAAGTTTAAACCTCTAATTATCTTCTCCGTCGGATTTGAGCTTCAGTTGGTATAAATCTCTCTCAATTTTTACATTTATCCTCTTTGAGCAAGTAAGATTCAAGGTTTTTCTTGCATATCCATTTATTTTGAATTTTTGTTTTATGATCATCAAGTATTCACTTCCTTGTGTTTTTTAATCAAAGTTGGAATTGAATCAACCATTCATCTTTTAACCTCTCTTTATGCCTGTTGGGTTTTAGTTTGATTGTGAAGCTAAAGTTTTTTAATTGAATTGAATGGAAAACTTGATGATTGTGTAATATTGTTATTTGTGTTTGTCTGTTTTTTGCTTCATTGTAATGTTGCCTGATTCAGTGAGAACAATAGAGGCAGTGAAACTTAGAGACTATTACACATTAGAGGTCATGAACAAAAATCAACATGATCTCCTTCTTAGGGAATCTGATCACTTCCCACCTCCTCTAGGTTGCTTTCTCCATTTTTCCATCTTCTCAAGGAACTTCATCATTGTTTTCCATTTTGGCTGGGAAAAGTTCTATCGAAGTAAGGAATTAGAAGCGTCCTCCACCTGTTTGTAGAAATGACTGAGTGAAGTTTTTGAACCTTCCATGTATGTTTGCTTTAGTTTTAGACTGTTATACAATAATCCTTCCAATTATGTTTCTAAACATTCAAAACTGTACGTATAATCCTATCAAATCATTAACACAAAAGTTGAAATTTGACTATGAATTTAAATGTTTAAATATATATATATATATATATATAAACAAAGGACTCATTTGATAACCATTTGAAATTTGAAAGTTGAAATATATATATATATATATATATAAACAAAGGACTCATTTGATAACCATTTGAAATTTGAAAGTTGGTCTTGTTTTTTTACCATTTATCTTTTCCACAATTTTCATTTTTACTGTAAAAATATTTGAATTTCAGCTAAATTTCAACTACAAAAGCCAATTTTTAATTTTCAAAACTTGGCGAAAAATTTTGAATTGTTCTTAGAAGTAGTTAACAAAATAAATAAATGTTTGAAAGTAGTGTAAACTTTTATTAGAAAAAAAATCATATTCTATATTGTGATATTATTTCCACTTCATGGATCAATGGCCCATATGTTGAGATCACATAAGACATTTGCAAATTGCATCAGCAAGTCCAGTTTTTTATCGATTACTGTTTGTTTGTGTGAGTTGAAATAGGCGGATAAATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAGTTCATAGTTTTGGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGGCATGCCAATCACTGGTGGCTGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGTGATGTCGTTGAGCCAAGCGACATTATACGGTTAACGAATGGGATATTTTCATACAGTCGAAACAATAATCTGGTTCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCATTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTACTCTCGCATCTTTCCTCCCATTCGTTGATAGTCTTATGGTGGTTGTAGACCAAATTTGAGAAAGAAAGGTCAAGGAAAGAGTAAATTTTGAAGATGCATTTCGCATTATGCTACACACATCTTAAATGAAAATGCACATGACACTATACTTACCTTTAGTCGTTGAGTCAGATGCTGCGGAAGTTATCAAGTTATCAATATTCAAACTGGTTCTTTGGAATATCAAAGTAATTTGCTCACTGTCATCACCGATGTATGATGTAA

mRNA sequence

GCCTTATTTTTGGTAACTGTAGAAGTTTAAACCTCTAATTATCTTCTCCGTCGGATTTGAGCTTCAGTTGGTATAAATCTCTCTCAATTTTTACATTTATCCTCTTTGAGCAAGCGGATAAATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAGTTCATAGTTTTGGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGGCATGCCAATCACTGGTGGCTGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGTGATGTCGTTGAGCCAAGCGACATTATACGGTTAACGAATGGGATATTTTCATACAGTCGAAACAATAATCTGGTTCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCATTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTACTCTCGCATCTTTCCTCCCATTCGTTGATAGTCTTATGGTGGTTGTAGACCAAATTTGAGAAAGAAAGGTCAAGGAAAGAGTAAATTTTGAAGATGCATTTCGCATTATGCTACACACATCTTAAATGAAAATGCACATGACACTATACTTACCTTTAGTCGTTGAGTCAGATGCTGCGGAAGTTATCAAGTTATCAATATTCAAACTGGTTCTTTGGAATATCAAAGTAATTTGCTCACTGTCATCACCGATGTATGATGTAA

Coding sequence (CDS)

ATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAGTTCATAGTTTTGGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGGCATGCCAATCACTGGTGGCTGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGTGATGTCGTTGAGCCAAGCGACATTATACGGTTAACGAATGGGATATTTTCATACAGTCGAAACAATAATCTGGTTCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATCCATTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTACTCTCGCATCTTTCCTCCCATTCGTTGA

Protein sequence

MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

Homology

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BLAST of PI0003950 vs. ExPASy Swiss-Prot
Match: Q54X41 (SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-14
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 2   MIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVE 61
           +I + ++ P ++N +N  FIVL+KG  T + +    Q LVAD TA+++  +W    + ++
Sbjct: 3   LIKVNEIKPYSKN-INCVFIVLDKGPPTKKKEGTIYQVLVADSTASINMTVWDALGEQIQ 62

Query: 62  PSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHW 113
           P DI+RL  G +S      L L  GK G IEK+GEF   FVE PN+S   W
Sbjct: 63  PGDILRLKGG-YSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLW 111

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BLAST of PI0003950 vs. ExPASy Swiss-Prot
Match: Q3SWT1 (SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 51/137 (37.23%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 5   LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPS 64
           +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 65  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTIN-SNKY 124
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T   SNK 
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQASNKS 126

Query: 125 VK--ESVLSPYSRIFPP 138
           V+   S  +P +   PP
Sbjct: 127 VQNDSSPTAPQATTGPP 141

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BLAST of PI0003950 vs. ExPASy Swiss-Prot
Match: Q8R2Y9 (SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-13
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 5   LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPS 64
           +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 65  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINS-NKY 124
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T  + NK 
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQAPNKS 126

Query: 125 VKESVLSP 131
           V+ +  SP
Sbjct: 127 VQNNDNSP 132

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BLAST of PI0003950 vs. ExPASy Swiss-Prot
Match: A6QLK2 (SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 5   LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPS 64
           +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 65  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE 110
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

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BLAST of PI0003950 vs. ExPASy Swiss-Prot
Match: Q9BQ15 (SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 5   LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPS 64
           +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 65  DIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE 110
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

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BLAST of PI0003950 vs. ExPASy TrEMBL
Match: A0A1S3BPN4 (SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVV
Sbjct: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN
Sbjct: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 122 KYVKESVLSPYSRIFPPIR 140

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BLAST of PI0003950 vs. ExPASy TrEMBL
Match: A0A5D3CIR3 (SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004040 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVV
Sbjct: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN
Sbjct: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 122 KYVKESVLSPYSRIFPPIR 140

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BLAST of PI0003950 vs. ExPASy TrEMBL
Match: A0A0A0LW03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVV
Sbjct: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of PI0003950 vs. ExPASy TrEMBL
Match: A0A6J1HAL0 (SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.6e-68
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of PI0003950 vs. ExPASy TrEMBL
Match: A0A6J1HZ66 (SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.9e-67
Identity = 128/139 (92.09%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMI LKDLVPAAQN VNTQFIVLEKGMTTM+GQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMDGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLMNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTSNSK 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESV+SPYSRIFPPIR
Sbjct: 121 KYVKESVVSPYSRIFPPIR 139

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BLAST of PI0003950 vs. NCBI nr
Match: XP_004135609.1 (SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protein Csa_007591 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVV
Sbjct: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of PI0003950 vs. NCBI nr
Match: XP_008450623.1 (PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >KAA0050905.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa] >TYK10256.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVV
Sbjct: 2   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVV 61

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN
Sbjct: 62  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 121

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 122 KYVKESVLSPYSRIFPPIR 140

[Close]

BLAST of PI0003950 vs. NCBI nr
Match: XP_038878334.1 (SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878336.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878337.1 SOSS complex subunit B homolog [Benincasa hispida])

HSP 1 Score: 274.6 bits (701), Expect = 4.6e-70
Identity = 135/139 (97.12%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMI LKDLVPAAQN VNTQFIVLEKGMT MEGQNKACQSLVADETAAVHFQLWGDECDVV
Sbjct: 1   MMIALKDLVPAAQNNVNTQFIVLEKGMTIMEGQNKACQSLVADETAAVHFQLWGDECDVV 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSN
Sbjct: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSN 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of PI0003950 vs. NCBI nr
Match: XP_022961520.1 (SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex subunit B homolog [Cucurbita moschata] >KAG6590445.1 SOSS complex subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.9 bits (681), Expect = 9.6e-68
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of PI0003950 vs. NCBI nr
Match: XP_023515959.1 (SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           MMI LKDLVPAAQN VNTQFIVL+KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVV
Sbjct: 1   MMISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVV 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           EPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MVFVETPNMSEIHWVPDT NS 
Sbjct: 61  EPSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSK 120

Query: 121 KYVKESVLSPYSRIFPPIR 140
           KYVKESVLSPYSRIFPPIR
Sbjct: 121 KYVKESVLSPYSRIFPPIR 139

[Close]

BLAST of PI0003950 vs. TAIR 10
Match: AT5G63690.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-47
Identity = 83/138 (60.14%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 1   MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVV 60
           M + LKD+VPAAQN ++T+FI+L+K  ++       C +L ADETAAVH QLWGDECD  
Sbjct: 1   MQLFLKDIVPAAQNNIDTRFIILDKAKSSAANGKNYCIALAADETAAVHIQLWGDECDAF 60

Query: 61  EPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSN 120
           E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  N  
Sbjct: 61  EAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENPK 120

Query: 121 KYVKESVLSPYSRIFPPI 139
           +Y++  V+S YSRIFPP+
Sbjct: 121 RYIQSGVVSAYSRIFPPL 138

The following BLAST results are available for this feature:

BLAST of PI0003950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54X41	8.3e-14	39.64	SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279...	[more]
Q3SWT1	2.4e-13	37.23	SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1	[more]
Q8R2Y9	4.1e-13	37.50	SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1	[more]
A6QLK2	9.1e-13	39.62	SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1	[more]
Q9BQ15	9.1e-13	39.62	SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1	[more]

BLAST of PI0003950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPN4	1.1e-72	99.28	SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1	[more]
A0A5D3CIR3	1.1e-72	99.28	SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LW03	1.1e-72	99.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1	[more]
A0A6J1HAL0	4.6e-68	93.53	SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=...	[more]
A0A6J1HZ66	3.9e-67	92.09	SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 ...	[more]

BLAST of PI0003950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135609.1	2.2e-72	99.28	SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protei...	[more]
XP_008450623.1	2.2e-72	99.28	PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICT...	[more]
XP_038878334.1	4.6e-70	97.12	SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex ...	[more]
XP_022961520.1	9.6e-68	93.53	SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex...	[more]
XP_023515959.1	2.1e-67	92.09	SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0003950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63690.1	4.5e-47	60.14	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 2..110 e-value: 9.9E-25 score: 88.9
None	No IPR available	PANTHER	PTHR13356:SF0	SOSS COMPLEX SUBUNIT B HOMOLOG	coord: 1..138
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 1..138
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003950.1	PI0003950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0010212	response to ionizing radiation
cellular_component	GO:0070876	SOSS complex
molecular_function	GO:0003677	DNA binding