PI0003916 (gene) Melon (PI 482460) v1

Overview


Name	PI0003916
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	NBS-LRR type resistance protein
Location	chr05: 17427864 .. 17428073 (-)
RNA-Seq Expression	PI0003916
Synteny	PI0003916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATAGGGAGGTGAAGGAACTAAAGTTCAGCTTTCAGATGTCGCAATCAAAGATTAAGGAACTTGAAAAAGGGCAAAGACGTATATTAGAGGAGCATGCCAGAGAAATAGAAGAACAAAGAAGAATGTCAGATATGCATGCAAGGGAAATGGAAGAAATGAAAAAAATGATTGAAGAAATGGCACGAGCACAAAGAGGACCGTGA

mRNA sequence

ATGCATGATAGGGAGGTGAAGGAACTAAAGTTCAGCTTTCAGATGTCGCAATCAAAGATTAAGGAACTTGAAAAAGGGCAAAGACGTATATTAGAGGAGCATGCCAGAGAAATAGAAGAACAAAGAAGAATGTCAGATATGCATGCAAGGGAAATGGAAGAAATGAAAAAAATGATTGAAGAAATGGCACGAGCACAAAGAGGACCGTGA

Coding sequence (CDS)

ATGCATGATAGGGAGGTGAAGGAACTAAAGTTCAGCTTTCAGATGTCGCAATCAAAGATTAAGGAACTTGAAAAAGGGCAAAGACGTATATTAGAGGAGCATGCCAGAGAAATAGAAGAACAAAGAAGAATGTCAGATATGCATGCAAGGGAAATGGAAGAAATGAAAAAAATGATTGAAGAAATGGCACGAGCACAAAGAGGACCGTGA

Protein sequence

MHDREVKELKFSFQMSQSKIKELEKGQRRILEEHAREIEEQRRMSDMHAREMEEMKKMIEEMARAQRGP

Homology

[Close]

BLAST of PI0003916 vs. ExPASy TrEMBL
Match: A0A5D3D7J4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1836G00070 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-04
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 19  KIKELEKGQRRILEEHAREIEEQRRMSDMHAREMEEMKKMIEEMARAQRGP 70
           K K L + QR  LEE  R IEEQRR S++H ++MEEMKKMIEEM+RA RGP
Sbjct: 95  KAKVLTEQQRFELEEAKRMIEEQRRTSELHTQQMEEMKKMIEEMSRAHRGP 145

[Close]

BLAST of PI0003916 vs. NCBI nr
Match: XP_031737881.1 (uncharacterized protein LOC116402552 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 8.5e-09
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1   MHDREVKELKFSFQMSQSKIKELEKGQRRILEEHAREIEEQRRMSDMHAREMEEMKKMIE 60
           +HDREV EL+ + + SQS+IKEL++GQRR+       IEEQ + S+MHAR++E+MKKMIE
Sbjct: 116 IHDREVMELRNTVETSQSRIKELKEGQRRM-------IEEQIKTSEMHARQIEKMKKMIE 175

Query: 61  EMARAQRGP 70
           EM RA+RGP
Sbjct: 176 EMTRAKRGP 177

[Close]

BLAST of PI0003916 vs. NCBI nr
Match: TYK19514.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-04
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 19  KIKELEKGQRRILEEHAREIEEQRRMSDMHAREMEEMKKMIEEMARAQRGP 70
           K K L + QR  LEE  R IEEQRR S++H ++MEEMKKMIEEM+RA RGP
Sbjct: 95  KAKVLTEQQRFELEEAKRMIEEQRRTSELHTQQMEEMKKMIEEMSRAHRGP 145

The following BLAST results are available for this feature:

BLAST of PI0003916 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7J4	3.1e-04	64.71	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of PI0003916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737881.1	8.5e-09	59.42	uncharacterized protein LOC116402552 [Cucumis sativus]	[more]
TYK19514.1	6.3e-04	64.71	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0003916 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003916.1	PI0003916.1	mRNA