PI0003904 (gene) Melon (PI 482460) v1

Overview


Name	PI0003904
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr11: 16278737 .. 16279977 (-)
RNA-Seq Expression	PI0003904
Synteny	PI0003904

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGTTGCCGGGGAGCGACGGTAAGTAATTTGAAAAATTCTTTTAGGTTTGAATCTTTTCTTAGTTTCTTGATTCTATATTCAATTTCTAAAAAAAAATCTTTAAAACCAAAAAGAGAGAGTTATTTTGTGAAATCTTTTTCTCTCCCCTACTTGTATGTCTCGCTCTTCCAATCCTCACTTAGAATTTTTTGAAGACCTTAATAGGGAAGTGCGTAGAATTAGGAGAGAAAGGAGAGAAGAAATTAACCAAAATATTCCTCAAGAAAATCAAGAGCCTACCTTTGAAAACCAAAACCTTGATAGACAAACCATGGGCCAAGTTAGAGAAAAGACTCTTAGAGAACTCTCTGAAATTGATGAAGACCAAAGACCCCTATGTATAGTGATTCCCCCAACCACTCAACCTTTCGAGCTTAAACCTGGACTAATCCATCTTTTACCAATCTATAAGGGTAGCTCGGGTGAAGATCCTCATAAACACCTTAAGGATTTTCATATGGTTTGTGACTCTATGAGACCACACGGAGTTTCTGAAGAACAACTCAATCTTAGAGCCTTTCCATTTTCCTTAACAGATACAGCCAAGCGTTGGCTTTATTACTTAGAACCGGGATCCATCACAACTTGGGGAGGTCTCAAAAAGAAATTCCTATTAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGACAAGCTTTTGGGGAGTTTTTATCTGAATACTGGGAGCGCTTTAAGGAGCTTTGCGCTAGCTTTCCCCATCATCATATTTCTGACCCTTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGATAAGACTCCTACTGAAGCAAGAGAGCTAATATCACGGATGGCTGAAAATTCACAAAATTTTGGCAACAGAGCATTCGAGCTCGACAATTCATTGACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGTAA

mRNA sequence

ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGTAA

Coding sequence (CDS)

ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGTAA

Protein sequence

MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT

Homology

[Close]

BLAST of PI0003904 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  PT 71
            T
Sbjct: 212 HT 213

[Close]

BLAST of PI0003904 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-22
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 PT 71
           T
Sbjct: 71 HT 72

[Close]

BLAST of PI0003904 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-22
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 PT 71
           T
Sbjct: 71 HT 72

[Close]

BLAST of PI0003904 vs. ExPASy TrEMBL
Match: A0A5A7UID2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001450 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 43/59 (72.88%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT 71
           +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN+GWRDNPNLRWGN+NQ+ T
Sbjct: 72  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWRDNPNLRWGNDNQKHT 130

[Close]

BLAST of PI0003904 vs. ExPASy TrEMBL
Match: A0A5D3D815 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00050 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 44/60 (73.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 126

[Close]

BLAST of PI0003904 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  PT 71
            T
Sbjct: 212 HT 213

[Close]

BLAST of PI0003904 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 5.2e-22
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 PT 71
           T
Sbjct: 71 HT 72

[Close]

BLAST of PI0003904 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 5.2e-22
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 PT 71
           T
Sbjct: 71 HT 72

[Close]

BLAST of PI0003904 vs. NCBI nr
Match: TYK19600.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-22
Identity = 44/60 (73.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 126

[Close]

BLAST of PI0003904 vs. NCBI nr
Match: KAA0053321.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-22
Identity = 43/59 (72.88%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT 71
           +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN+GWRDNPNLRWGN+NQ+ T
Sbjct: 72  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWRDNPNLRWGNDNQKHT 130

The following BLAST results are available for this feature:

BLAST of PI0003904 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003904 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRR8	8.7e-23	72.58	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DCG3	2.5e-22	70.97	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S4E3R2	2.5e-22	70.97	uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=...	[more]
A0A5A7UID2	3.3e-22	72.88	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3D815	3.3e-22	73.33	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0003904 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047407.1	1.8e-22	72.58	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
XP_016902871.1	5.2e-22	70.97	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
KAA0051761.1	5.2e-22	70.97	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos...	[more]
TYK19600.1	6.8e-22	73.33	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0053321.1	6.8e-22	72.88	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0003904 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..70
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 4..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003904.1	PI0003904.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding