PI0003837 (gene) Melon (PI 482460) v1

Overview


Name	PI0003837
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr12: 3054468 .. 3054647 (+)
RNA-Seq Expression	PI0003837
Synteny	PI0003837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATATGTACAACAGGATTGACGAGAAACCTGAATATTCTGTAGGAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGGCATATCTTCCTTGCCCTACCAAAAAGCAATGCTACCAACCATGGTTTCTTGGACAAACCAATTGAAACTTCAGAACCTCCATTGCATTCCTAA

mRNA sequence

ATGTTGAATATGTACAACAGGATTGACGAGAAACCTGAATATTCTGTAGGAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGGCATATCTTCCTTGCCCTACCAAAAAGCAATGCTACCAACCATGGTTTCTTGGACAAACCAATTGAAACTTCAGAACCTCCATTGCATTCCTAA

Coding sequence (CDS)

ATGTTGAATATGTACAACAGGATTGACGAGAAACCTGAATATTCTGTAGGAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGGCATATCTTCCTTGCCCTACCAAAAAGCAATGCTACCAACCATGGTTTCTTGGACAAACCAATTGAAACTTCAGAACCTCCATTGCATTCCTAA

Protein sequence

MLNMYNRIDEKPEYSVGAAMLVTILLDLWHIFLALPKSNATNHGFLDKPIETSEPPLHS

Homology

[Close]

BLAST of PI0003837 vs. ExPASy TrEMBL
Match: A0A0A0LWM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050350 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 8  IDEKPEYSVGAAMLVTILLDLWHIFLALPKSNATNHGFLDKPIETSEPPLH 59
          IDEKP  SV AAMLVTILLDL  IFLALPKS+A NHGFL+KPIETSEP LH
Sbjct: 29 IDEKPGESVEAAMLVTILLDLCRIFLALPKSDAINHGFLEKPIETSEPALH 79

[Close]

BLAST of PI0003837 vs. NCBI nr
Match: KGN64396.1 (hypothetical protein Csa_013371 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-13
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 8  IDEKPEYSVGAAMLVTILLDLWHIFLALPKSNATNHGFLDKPIETSEPPLH 59
          IDEKP  SV AAMLVTILLDL  IFLALPKS+A NHGFL+KPIETSEP LH
Sbjct: 29 IDEKPGESVEAAMLVTILLDLCRIFLALPKSDAINHGFLEKPIETSEPALH 79

The following BLAST results are available for this feature:

BLAST of PI0003837 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWM1	3.1e-13	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050350 PE=4 SV=1	[more]

BLAST of PI0003837 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64396.1	6.4e-13	82.35	hypothetical protein Csa_013371 [Cucumis sativus]	[more]

BLAST of PI0003837 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003837.1	PI0003837.1	mRNA