PI0003823 (gene) Melon (PI 482460) v1

Overview
NamePI0003823
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTetratricopeptide-like helical
Locationchr07: 3671660 .. 3671899 (+)
RNA-Seq ExpressionPI0003823
SyntenyPI0003823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAAACAAATACTCATCAAATGGAGAACAACATTCCACCACATTTATTAGTCGACGAAGACGAAGAAGATATAACAAGTACAGCCAAGGAATTATGCGTTTCCGGTCACCGAAAAGATGCGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCCATTTTAA

mRNA sequence

ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAAACAAATACTCATCAAATGGAGAACAACATTCCACCACATTTATTAGTCGACGAAGACGAAGAAGATATAACAAGTACAGCCAAGGAATTATGCGTTTCCGGTCACCGAAAAGATGCGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCCATTTTAA

Coding sequence (CDS)

ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAAACAAATACTCATCAAATGGAGAACAACATTCCACCACATTTATTAGTCGACGAAGACGAAGAAGATATAACAAGTACAGCCAAGGAATTATGCGTTTCCGGTCACCGAAAAGATGCGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCCATTTTAA

Protein sequence

MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVDEDEEDITSTAKELCVSGHRKDADWWCFVLSGDHMPF
Homology
BLAST of PI0003823 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.0e-21
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENN--IPPHLLVDEDEEDITSTAKELCV 60
          M VSLEALAMAGIDSNEWAMDAEEW+TNTHQMEN+  IPPHLL DEDEE+I   AKELC+
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENI--AAKELCI 60

Query: 61 SGHRKD 65
          SGHRKD
Sbjct: 61 SGHRKD 64

BLAST of PI0003823 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVDEDEEDITSTAK 55
          M+VSLEALAMAGIDSNEWAMDAEEWE N  +ME +IPPHLL DED+E+   + K
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEKDIPPHLLADEDDEEDEMSTK 52

BLAST of PI0003823 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 39/63 (61.90%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVDE------DEEDITSTAK 58
          M+VSLEALAMAGIDSNEWAMDAEEWE N   +   +PPHLL DE      DE   TST  
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV---VPPHLLADEEDDEDGDEHVTTSTIS 60

BLAST of PI0003823 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVD-EDEED---ITSTAKEL 58
          M+VSLEALAMAGIDSNEW MDA+EWE N   +   +PPHLL D ED+ED   +TST    
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 58

BLAST of PI0003823 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVD-EDEED---ITSTAKEL 58
          M+VSLEALAMAGIDSNEW MDA+EWE N   +   +PPHLL D ED+ED   +TST    
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 58

BLAST of PI0003823 vs. NCBI nr
Match: KAE8649147.1 (hypothetical protein Csa_014525, partial [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENN--IPPHLLVDEDEEDITSTAKELCV 60
          M VSLEALAMAGIDSNEWAMDAEEW+TNTHQMEN+  IPPHLL DEDEE+I   AKELC+
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENI--AAKELCI 60

Query: 61 SGHRKD 65
          SGHRKD
Sbjct: 61 SGHRKD 64

BLAST of PI0003823 vs. NCBI nr
Match: KAE8637184.1 (hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothetical protein CSA_023968, partial [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-18
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 7  ALAMAGIDSNEWAMDAEEWETNTHQMENN--IPPHLLVDEDEEDITSTAKELCVSGHRKD 65
          ALAMAGIDSNEWAMDAEEW+TNTHQMEN+  IPPHLL DEDEE+I   AKELC+SGHRKD
Sbjct: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENI--AAKELCISGHRKD 58

BLAST of PI0003823 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVDEDEED--ITSTAKELC- 60
          M+VSLEALAMAGI SNEWAMDAEEWE N  ++EN++PPHLL DED++D  +TST      
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIENDVPPHLLADEDDDDDNVTSTVSNYSF 60

Query: 61 -VSG-----HRKDA---DWWCF 71
           V+G     HR+D    D  CF
Sbjct: 61 PVAGFFDSLHREDGGADDIHCF 80

BLAST of PI0003823 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVDEDEEDITSTAK 55
          M+VSLEALAMAGIDSNEWAMDAEEWE N  +ME +IPPHLL DED+E+   + K
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEKDIPPHLLADEDDEEDEMSTK 52

BLAST of PI0003823 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVDEDEED--ITST 53
          M+VSLEALAMAGI SNEWAMDAEEWE N  ++EN++PPHLL DED++D  +TST
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIENDVPPHLLADEDDDDDNVTST 52

BLAST of PI0003823 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 9.1e-05
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 5  LEALAMAGIDSNEWAMDAEEWETNTHQMENNIPPHLLVDEDEED 49
          +EALAMAG+D  EW +  EEWE      E+ +P HLL D+ +E+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWEL----QESVVPLHLLADDFKEE 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU907.0e-2183.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
A0A6J1FX981.3e-1172.22uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A0A0KWE72.8e-0961.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU03.6e-0962.30Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS683.6e-0962.30Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
KAE8649147.11.5e-2083.33hypothetical protein Csa_014525, partial [Cucumis sativus][more]
KAE8637184.13.0e-1883.33hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothe... [more]
KAG7015383.11.6e-1157.32hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022943015.12.7e-1172.22uncharacterized protein LOC111447880 [Cucurbita moschata][more]
KAG6577295.14.7e-1172.22hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT2G22320.19.1e-0547.73unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003823.1PI0003823.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane