PI0003813 (gene) Melon (PI 482460) v1

Overview
NamePI0003813
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr11: 16248061 .. 16249302 (+)
RNA-Seq ExpressionPI0003813
SyntenyPI0003813
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAATATTACAACTCTTCTTACTTCTTTTGTGCAAGGAGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCCAATGATAAATGCCCCGACTTGATTGAGGATGTTAATGTCATTCGTAAATATGACCCCCATGGTAATACATACAATTCGAGATGGAGAGACAACCCAAACTTGAAATGGGGGAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGAACATATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTGAACAGGAGATGAAACAACAAATAACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAATCGAACCATGCAAATGTGAGTGCCATTTCACTAAGAAGTGGTAAGATTCTTGAAACCCTTCTACTGAAGAAAAAAAGGTAACTCCTAATCCTATCCTTCTTGATAATGAAAGTGAGTCCAAGGAAGAAAAAGTTGAAACAAGTTCTTTACCATCCAATTCCAAGAAAGGTAAAACCCCCCTTGATGATTTTACTCCTTATGTACCTAAAGCTCCTTTTCCTTCTAGGTTGTCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGCTTAGAAAGGTTCTTACCGCTACTAGATGCAATCCAACAAGTGCCAAGGTATGCAAAGTTTCTAAAGGAGTTGTGCACCAACAAGAGGAAATTAAAGAAAAGCCCATGGTAAGTGATAGAACTATTTTTGACTTAAAATATCTAGCATAATTCTACCCATTATCATTCAAATACTTACTAAAATGGCACTTTTAGGTAAAATATGATAATAGACCCTGATACGAGCCCAACGACACTAAAATCAGCTAAATCGGAATTCTAACGAACAAAAACAGAAAAAAAACAAGTTCAATGGGCAAAACGGTAATTTCCCAGGAGAAATTCAAACATCTTCACGCAGCAAAATCACCCAGAGACCAAAACGCATGGTGAATGCGTCCAGCCTCATATCGCGAAGCACACCGCCAGCCTGCAGAACACCTACTTTGTTCTCAGACGCCCGTTCCGCGTCTCGCAGCGCTTCCTCCAGCCTACCTTAGCGCCCCGCGCTTCATCTCACGATTCATCCCGCATTTTGACTACCCGAGCTCACATACCTTCTCTGCAGAAGCTTCATTTCCCCTTACATCAAACTTAA

mRNA sequence

ATGCTAAATATTACAACTCTTCTTACTTCTTTTGTGCAAGGAGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCCAATGATAAATGCCCCGACTTGATTGAGGATGTTAATGTCATTCGTAAATATGACCCCCATGGTAATACATACAATTCGAGATGGAGAGACAACCCAAACTTGAAATGGGGGAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGGAGATGAAACAACAAATAACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAATCGAACCATGCAAATGTGAGTGCCATTTCACTAAGAAGTGGTTGTCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGCTTAGAAAGGTTCTTACCGCTACTAGATGCAATCCAACAAGTGCCAAGGTATGCAAAGTTTCTAAAGGAGTTGTGCACCAACAAGAGGAAATTAAAGAAAAGCCCATGCAAAATCACCCAGAGACCAAAACGCATGGTGAATGCGTCCAGCCTCATATCGCGAAGCACACCGCCAGCCTGCAGAACACCTACTTTGTTCTCAGACGCCCGTTCCGCGTCTCGCAGCGCTTCCTCCAGCCTACCTTAGCGCCCCGCGCTTCATCTCACGATTCATCCCGCATTTTGACTACCCGAGCTCACATACCTTCTCTGCAGAAGCTTCATTTCCCCTTACATCAAACTTAA

Coding sequence (CDS)

ATGCTAAATATTACAACTCTTCTTACTTCTTTTGTGCAAGGAGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCCAATGATAAATGCCCCGACTTGATTGAGGATGTTAATGTCATTCGTAAATATGACCCCCATGGTAATACATACAATTCGAGATGGAGAGACAACCCAAACTTGAAATGGGGGAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGGAGATGAAACAACAAATAACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAATCGAACCATGCAAATGTGAGTGCCATTTCACTAAGAAGTGGTTGTCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGCTTAGAAAGGTTCTTACCGCTACTAGATGCAATCCAACAAGTGCCAAGGTATGCAAAGTTTCTAAAGGAGTTGTGCACCAACAAGAGGAAATTAAAGAAAAGCCCATGCAAAATCACCCAGAGACCAAAACGCATGGTGAATGCGTCCAGCCTCATATCGCGAAGCACACCGCCAGCCTGCAGAACACCTACTTTGTTCTCAGACGCCCGTTCCGCGTCTCGCAGCGCTTCCTCCAGCCTACCTTAGCGCCCCGCGCTTCATCTCACGATTCATCCCGCATTTTGACTACCCGAGCTCACATACCTTCTCTGCAGAAGCTTCATTTCCCCTTACATCAAACTTAA

Protein sequence

MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDETTNNSTHYRHKQVGRKRQASGPIEPCKCECHFTKKWLSPKKKETPKEEELLEMLRKVLTATRCNPTSAKVCKVSKGVVHQQEEIKEKPMQNHPETKTHGECVQPHIAKHTASLQNTYFVLRRPFRVSQRFLQPTLAPRASSHDSSRILTTRAHIPSLQKLHFPLHQT
Homology
[Close]
BLAST of PI0003813 vs. ExPASy TrEMBL
Match: A0A5A7VGL0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001560 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-38
Identity = 98/188 (52.13%), Postives = 119/188 (63.30%), Query Frame = 0 

Query: 4   ITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNP 63
           +TTLLTSFVQG  LKV KCGVCGLVGHPNDKC ++IEDVN++RK+DPHGNTYNS WRDNP
Sbjct: 1   MTTLLTSFVQGTLLKVTKCGVCGLVGHPNDKCLEVIEDVNIVRKHDPHGNTYNSGWRDNP 60

Query: 64  NLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYRHKQVGRKRQASGPIEPCKCE 123
           NL+WGNDNQK TQA  +SSNQG            N+  ++ K   +  Q +  I     +
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTFSFQQKMKQQMTQLTTAISKMDGK 120

Query: 124 CHF----TKKWLSPKKKETPKEEELLEMLRKV---LTATRCNPTSAKVCKVSKGVVHQQE 178
            +F    T   L+PKKKETPKEEELLEM RKV   L          K  K  K +   + 
Sbjct: 121 ANFRLNRTMLMLAPKKKETPKEEELLEMFRKVQINLPLLDAIQQVPKYAKFLKELCTNKR 180

[Close]
BLAST of PI0003813 vs. ExPASy TrEMBL
Match: A0A5A7UID2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001450 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-36
Identity = 104/218 (47.71%), Postives = 128/218 (58.72%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQ  PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDP+GNTYNS WR
Sbjct: 56  MLNMTTLLTSFVQDTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWR 115

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYRHKQVGRKRQASGPIEPC 120
           DNPNL+WGNDNQK TQA  +SSNQG            N+  ++ +   +  Q +  I   
Sbjct: 116 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 175

Query: 121 K------------------------CECHFTK-KWLSPKKKETPKEEELLEMLRKV---- 180
                                     +   TK K ++PKKKETPKEEELLEM RKV    
Sbjct: 176 DGKGKLLAQSDHANVSAISLRSGKILDTPTTKEKKVAPKKKETPKEEELLEMFRKVQINL 235

[Close]
BLAST of PI0003813 vs. ExPASy TrEMBL
Match: A0A5A7V1C6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003360 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDPHGNTYNSRWR
Sbjct: 153 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHGNTYNSRWR 212

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQG 86
           DNPNL+WGNDNQK TQA S+SSNQG
Sbjct: 213 DNPNLRWGNDNQKHTQAPSTSSNQG 237

[Close]
BLAST of PI0003813 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.0e-36
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNS WR
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQG 86
           DNPNL+WGNDNQK TQA S+SSNQG
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQG 223

[Close]
BLAST of PI0003813 vs. ExPASy TrEMBL
Match: A0A5A7ULU1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002130 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.0e-36
Identity = 93/176 (52.84%), Postives = 109/176 (61.93%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVNV+R+YDPHGNT NS WR
Sbjct: 69  MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRRYDPHGNTCNSGWR 128

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQGDETTN-------NSTHYRHKQVGR---------KR 120
           DNPN +WGNDNQK TQ   +SSNQG    +       N+  ++ +   +         K 
Sbjct: 129 DNPNFRWGNDNQKHTQVPPTSSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAISKM 188

Query: 121 QASG--PIEPCKCECHF--------------TKKWLSPKKKETPKEEELLEMLRKV 145
              G  P +P                      +K L+PKKKET KEEELLEM RKV
Sbjct: 189 DGKGKLPAQPNHANVSTISLRSGKILDTPPPKRKRLAPKKKETSKEEELLEMFRKV 244

[Close]
BLAST of PI0003813 vs. NCBI nr
Match: KAA0065466.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 8.5e-38
Identity = 98/188 (52.13%), Postives = 119/188 (63.30%), Query Frame = 0 

Query: 4   ITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNP 63
           +TTLLTSFVQG  LKV KCGVCGLVGHPNDKC ++IEDVN++RK+DPHGNTYNS WRDNP
Sbjct: 1   MTTLLTSFVQGTLLKVTKCGVCGLVGHPNDKCLEVIEDVNIVRKHDPHGNTYNSGWRDNP 60

Query: 64  NLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYRHKQVGRKRQASGPIEPCKCE 123
           NL+WGNDNQK TQA  +SSNQG            N+  ++ K   +  Q +  I     +
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTFSFQQKMKQQMTQLTTAISKMDGK 120

Query: 124 CHF----TKKWLSPKKKETPKEEELLEMLRKV---LTATRCNPTSAKVCKVSKGVVHQQE 178
            +F    T   L+PKKKETPKEEELLEM RKV   L          K  K  K +   + 
Sbjct: 121 ANFRLNRTMLMLAPKKKETPKEEELLEMFRKVQINLPLLDAIQQVPKYAKFLKELCTNKR 180

[Close]
BLAST of PI0003813 vs. NCBI nr
Match: KAA0053321.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 2.1e-36
Identity = 104/218 (47.71%), Postives = 128/218 (58.72%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQ  PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDP+GNTYNS WR
Sbjct: 56  MLNMTTLLTSFVQDTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWR 115

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYRHKQVGRKRQASGPIEPC 120
           DNPNL+WGNDNQK TQA  +SSNQG            N+  ++ +   +  Q +  I   
Sbjct: 116 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 175

Query: 121 K------------------------CECHFTK-KWLSPKKKETPKEEELLEMLRKV---- 180
                                     +   TK K ++PKKKETPKEEELLEM RKV    
Sbjct: 176 DGKGKLLAQSDHANVSAISLRSGKILDTPTTKEKKVAPKKKETPKEEELLEMFRKVQINL 235

[Close]
BLAST of PI0003813 vs. NCBI nr
Match: KAA0062012.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 3.6e-36
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDPHGNTYNSRWR
Sbjct: 153 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHGNTYNSRWR 212

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQG 86
           DNPNL+WGNDNQK TQA S+SSNQG
Sbjct: 213 DNPNLRWGNDNQKHTQAPSTSSNQG 237

[Close]
BLAST of PI0003813 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-35
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNS WR
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQG 86
           DNPNL+WGNDNQK TQA S+SSNQG
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQG 223

[Close]
BLAST of PI0003813 vs. NCBI nr
Match: KAA0056048.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-35
Identity = 93/176 (52.84%), Postives = 109/176 (61.93%), Query Frame = 0 

Query: 1   MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWR 60
           MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVNV+R+YDPHGNT NS WR
Sbjct: 69  MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRRYDPHGNTCNSGWR 128

Query: 61  DNPNLKWGNDNQKPTQATSSSSNQGDETTN-------NSTHYRHKQVGR---------KR 120
           DNPN +WGNDNQK TQ   +SSNQG    +       N+  ++ +   +         K 
Sbjct: 129 DNPNFRWGNDNQKHTQVPPTSSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAISKM 188

Query: 121 QASG--PIEPCKCECHF--------------TKKWLSPKKKETPKEEELLEMLRKV 145
              G  P +P                      +K L+PKKKET KEEELLEM RKV
Sbjct: 189 DGKGKLPAQPNHANVSTISLRSGKILDTPPPKRKRLAPKKKETSKEEELLEMFRKV 244

The following BLAST results are available for this feature:
BLAST of PI0003813 vs.
Match NameE-valueIdentityDescription
BLAST of PI0003813 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGL04.1e-3852.13Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7UID21.0e-3647.71Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7V1C61.7e-3685.88Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3CRR85.0e-3685.88Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7ULU15.0e-3652.84Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of PI0003813 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065466.18.5e-3852.13retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0053321.12.1e-3647.71retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0062012.13.6e-3685.88retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0047407.11.0e-3585.88retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
KAA0056048.11.0e-3552.84retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of PI0003813 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003813.1PI0003813.1mRNA