PI0003806 (gene) Melon (PI 482460) v1

Overview


Name	PI0003806
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr03: 9650594 .. 9651886 (+)
RNA-Seq Expression	PI0003806
Synteny	PI0003806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCGATCATTTACTACTTGGAGGAGCACACGGTCATGGTATGTTATTTTATTTTAATTTAGATCAAACAATAGTTTTAATACTAAATGAGTGATATAATTAATTCAAAATCTAAAATATTAGTTTATTAATACAGATGGAGAGACCAATTTTGTGTAACAAGATCAGCTACTCATGTAGTTAGTCAGTATAGGTACATGTTTGACCTTCTTTAGCGTGATCAGATACGTCAATACTAAAACTTGAATTTTTTATACATTAGTATACATATATTTAGTGATTCTTAATGTAATGTGTGATATTTCAGATTATTTGGGAGTCTTACAAAAATGAAATTCATAATTTACCAAATTTTTGTAAGAACGGTCAAGATATATGGCGAACCATCAGTCCTCTCATATGTTTTCATAATAGTGAGTGACATTATCCTGATATAGTGATCAAACAATTCAATTTTAAACAAGATGTCCTATCAGAATGCAATACTGAGCCACTCTTACACAATATTGACTTGAGAGCCACGGATTGGTCAGACAAGGTTGCACATTGGGTAGTGCGATGACAATCTCGTAGAAGATTTATTGTGATGGGAGCTTCAATTCAACAATTTGATCGGGATGTGACTTAAAAATACATCCACTAGTATAATAATATTACAAGGTTCTACATCACTCGATCGGGAGCAGCTGTGGATCATCTAATACGTACTTAAATATTGAATAATTACTTTAAATTATTTACTCAACTAAATATTTTCTAATTTTTTACAATTCACAGAGATCGAACAACAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTAGCTTCACCAGTTCACAGAGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATAAAGTTTACCATAATGTAGAAGAAGTACATCCAGTGACACAAACACAAAGTCAAACTTGTTATGGTAGTCCGATGACGATGATGCCAGCATTTGGAGATGGATGTCGGCCTATCAACTTCTTACATTCATGGACATGGACACAGATGCGGCTGCAGAACATAACGAATATCTGTACTATAAAGCACCTACAGACGTATCAGACCCACAAGAGTACCAACAAGAACCAGAGAATCAAAAAGAGCCAGACAACCTAGAGTTCAGAGTCGACGACGACAACCAGCTCGACATCGACGACGTTTGGATTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

mRNA sequence

ATGAAAGCGATCATTTACTACTTGGAGGAGCACACGGTCATGAGATCGAACAACAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTAGCTTCACCAGTTCACAGAGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATAAAGTTTACCATAATGTAGAAGAAGTACATCCAGTGACACAAACACAAAATGCGGCTGCAGAACATAACGAATATCTGTACTATAAAGCACCTACAGACGTATCAGACCCACAAGAGTACCAACAAGAACCAGAGAATCAAAAAGAGCCAGACAACCTAGAGTTCAGAGTCGACGACGACAACCAGCTCGACATCGACGACGTTTGGATTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Coding sequence (CDS)

ATGAAAGCGATCATTTACTACTTGGAGGAGCACACGGTCATGAGATCGAACAACAGAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACCTATTGTAGCTTCACCAGTTCACAGAGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATAAAGTTTACCATAATGTAGAAGAAGTACATCCAGTGACACAAACACAAAATGCGGCTGCAGAACATAACGAATATCTGTACTATAAAGCACCTACAGACGTATCAGACCCACAAGAGTACCAACAAGAACCAGAGAATCAAAAAGAGCCAGACAACCTAGAGTTCAGAGTCGACGACGACAACCAGCTCGACATCGACGACGTTTGGATTGTGGAACACATTGATTTTCTTTTATCTTTTAAATGA

Protein sequence

MKAIIYYLEEHTVMRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELDKVYHNVEEVHPVTQTQNAAAEHNEYLYYKAPTDVSDPQEYQQEPENQKEPDNLEFRVDDDNQLDIDDVWIVEHIDFLLSFK

Homology

[Close]

BLAST of PI0003806 vs. ExPASy TrEMBL
Match: A0A5D3DFZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00610 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.1e-38
Identity = 86/136 (63.24%), Postives = 99/136 (72.79%), Query Frame = 0


Query: 12  TVMRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELD 71
           T++RSNN RLRDVADDPQQVLDICNNNERYMEEIH +YD+PIV  P+HRGRVRVEEAELD
Sbjct: 30  TLLRSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELD 89

Query: 72  KVYHNVEEVHPVTQTQNAAA---------------------------EHNEYLYYKAPTD 121
           +VYH V+EVHP+TQTQ+                              EHNEYLY++AP D
Sbjct: 90  EVYHKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPAD 149

[Close]

BLAST of PI0003806 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 86/161 (53.42%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 13  VMRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELDK 72
           V RSNN RLRDVADD QQ LDICNNNERYMEEIH MYD+PIV  PVHRG VRVEEAELDK
Sbjct: 37  VGRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDK 96

Query: 73  VYHNVEEVHPVTQTQNAA------------------------------------------ 121
           VYHNVEEV   TQTQ+                                            
Sbjct: 97  VYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPS 156

[Close]

BLAST of PI0003806 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 85/159 (53.46%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 15  RSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELDKVY 74
           RSNN RLRDVADD QQ LDICNNNERYMEEIH MYD+PIV  PVHRG VRVEEAELDKVY
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 75  HNVEEVHPVTQTQNAA-------------------------------------------- 121
           HNVEEV   TQTQ+                                              
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

[Close]

BLAST of PI0003806 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 82/160 (51.25%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 14  MRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELDKV 73
           +RSNN RLRDV +DPQQVLDICNNNERYME+IH +YD+PIV  PVHR R RVEEAELD+V
Sbjct: 316 LRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEV 375

Query: 74  YHNVEEVHPVTQTQNAA------------------------------------------- 121
           YHNVEEV P TQTQ+                                             
Sbjct: 376 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPST 435

[Close]

BLAST of PI0003806 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 82/167 (49.10%), Postives = 95/167 (56.89%), Query Frame = 0


Query: 7   YLEEHTVMRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVE 66
           Y+ +    RSNN RLRDVADD QQVLDICNNN+R+MEEIH MY +PIV   +HRGRV+VE
Sbjct: 28  YITQLGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVE 87

Query: 67  EAELDKVYHNVEEVHPVTQTQNAA------------------------------------ 121
           EAELD+VYHNVEE+ P TQ QN                                      
Sbjct: 88  EAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSY 147

[Close]

BLAST of PI0003806 vs. NCBI nr
Match: TYK22189.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-37
Identity = 86/136 (63.24%), Postives = 99/136 (72.79%), Query Frame = 0


Query: 12  TVMRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELD 71
           T++RSNN RLRDVADDPQQVLDICNNNERYMEEIH +YD+PIV  P+HRGRVRVEEAELD
Sbjct: 30  TLLRSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRVEEAELD 89

Query: 72  KVYHNVEEVHPVTQTQNAAA---------------------------EHNEYLYYKAPTD 121
           +VYH V+EVHP+TQTQ+                              EHNEYLY++AP D
Sbjct: 90  EVYHKVKEVHPMTQTQSQTGYGVGPSSSYMDVDPSTSYMHGHERGYEEHNEYLYHEAPAD 149

[Close]

BLAST of PI0003806 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 4.6e-31
Identity = 86/161 (53.42%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 13  VMRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELDK 72
           V RSNN RLRDVADD QQ LDICNNNERYMEEIH MYD+PIV  PVHRG VRVEEAELDK
Sbjct: 37  VGRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDK 96

Query: 73  VYHNVEEVHPVTQTQNAA------------------------------------------ 121
           VYHNVEEV   TQTQ+                                            
Sbjct: 97  VYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPS 156

[Close]

BLAST of PI0003806 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-31
Identity = 82/160 (51.25%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 14  MRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELDKV 73
           +RSNN RLRDV +DPQQVLDICNNNERYME+IH +YD+PIV  PVHR R RVEEAELD+V
Sbjct: 316 LRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEV 375

Query: 74  YHNVEEVHPVTQTQNAA------------------------------------------- 121
           YHNVEEV P TQTQ+                                             
Sbjct: 376 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPST 435

[Close]

BLAST of PI0003806 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-31
Identity = 85/159 (53.46%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 15  RSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVEEAELDKVY 74
           RSNN RLRDVADD QQ LDICNNNERYMEEIH MYD+PIV  PVHRG VRVEEAELDKVY
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 75  HNVEEVHPVTQTQNAA-------------------------------------------- 121
           HNVEEV   TQTQ+                                              
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

[Close]

BLAST of PI0003806 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 3.9e-30
Identity = 82/167 (49.10%), Postives = 95/167 (56.89%), Query Frame = 0


Query: 7   YLEEHTVMRSNNRRLRDVADDPQQVLDICNNNERYMEEIHYMYDVPIVASPVHRGRVRVE 66
           Y+ +    RSNN RLRDVADD QQVLDICNNN+R+MEEIH MY +PIV   +HRGRV+VE
Sbjct: 28  YITQLGATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVE 87

Query: 67  EAELDKVYHNVEEVHPVTQTQNAA------------------------------------ 121
           EAELD+VYHNVEE+ P TQ QN                                      
Sbjct: 88  EAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSY 147

The following BLAST results are available for this feature:

BLAST of PI0003806 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFZ9	7.1e-38	63.24	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	2.2e-31	53.42	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSG8	2.9e-31	53.46	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	2.9e-31	51.25	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	1.9e-30	49.10	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0003806 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22189.1	1.5e-37	63.24	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	4.6e-31	53.42	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK23842.1	6.0e-31	51.25	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK01176.1	6.0e-31	53.46	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0025972.1	3.9e-30	49.10	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0003806 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003806.1	PI0003806.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity