PI0003533 (gene) Melon (PI 482460) v1

Overview
NamePI0003533
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionStress response protein NST1-like
Locationchr11: 16323945 .. 16324784 (+)
RNA-Seq ExpressionPI0003533
SyntenyPI0003533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCATCATCAAGCCCGCGTAATAATAACATCCAAGTACGCTTCGACGGCCCTAAGGCAAAGCAAGCCCAATCGCAGGGCAGTGGCGAGCAAGAAACGCCTAGTTACACCCACCTTAAGCATGACAAAGGGAAGGTGTTACTGGAACCATCACCAGAAATAGATGATTTATGTGATGAATTAGAAGTTGATATGAAGGATAAGGTTGCCGTTTATGCGTTCATCGCTGAACGCAAGAGGAAGCGAAAAAAAGCACAGACGAAAAAGGCAAAGGAGGAACGCCGAAGAAAAGAAGAGTGTGAACAAAGAAAATTCGAGGAACGCCGTAAGGCAGAGAGTAGACCCTTGTAAATACACTCCTTGCCCAACGAAGTTGCCTTGAAACAAAAGAAGATCAAAGACAAGCTCTCCAATGTTTCCTTCACTAAGACGCAGGAAACGATAGAGGCGATCAAATCGGTCCTAAAAAGGAAGGAAGAGAAGAAGCAAATGCTCGCGGAATTGAGCGAGCAAGTGGAGGAACTCCTTGCAAAGTGCAAGGCCTTGGGAGTAGAGAGAGACGACCTCGAAGTCATTACTGAGGAATTCGAGGACGAGCTAGAGGTGATGAGTCCAATAGATCAAGGGCCACCGCCTAAGAAACAAAGGGAGGTCGCCAGACCATCTAAAGGAAAAAAGAGAGTTGGGGAATTTGGACCTGAAGAGCCCCTAGTAGGCAGCGAAGCCAAAACGAAAACGCCTTCCATTCACACAATTATAAAAATAAAAAAAGGGTTGTTTCCGTTTAATGGCACTCTCCTAGACTTCCTCTACGCGCAAATCCCTTTCTCTGTCTAG

mRNA sequence

ATGGCCGCATCATCAAGCCCGCGTAATAATAACATCCAAGTACGCTTCGACGGCCCTAAGGCAAAGCAAGCCCAATCGCAGGGCAGTGGCGAGCAAGAAACGCCTAGTTACACCCACCTTAAGCATGACAAAGGGAAGGTGTTACTGGAACCATCACCAGAAATAGATGATTTATGTGATGAATTAGAAGTTGATATGAAGGATAAGGTTGCCGTTTATGCGTTCATCGCTGAACGCAAGAGGAAGCGAAAAAAAGCACAGACGAAAAAGGCAAAGGAGGAACGCCGAAGAAAAGAAGAGTGTGAACAAAGAAAATTCGAGGAACGCCTTGCCTTGAAACAAAAGAAGATCAAAGACAAGCTCTCCAATGTTTCCTTCACTAAGACGCAGGAAACGATAGAGGCGATCAAATCGGTCCTAAAAAGGAAGGAAGAGAAGAAGCAAATGCTCGCGGAATTGAGCGAGCAAGTGGAGGAACTCCTTGCAAAGTGCAAGGCCTTGGGAGTAGAGAGAGACGACCTCGAAGTCATTACTGAGGAATTCGAGGACGAGCTAGAGGTGATGAGTCCAATAGATCAAGGGCCACCGCCTAAGAAACAAAGGGAGGTCGCCAGACCATCTAAAGGAAAAAAGAGAGTTGGGGAATTTGGACCTGAAGAGCCCCTAGTAGGCAGCGAAGCCAAAACGAAAACGCCTTCCATTCACACAATTATAAAAATAAAAAAAGGGTTGTTTCCGTTTAATGGCACTCTCCTAGACTTCCTCTACGCGCAAATCCCTTTCTCTGTCTAG

Coding sequence (CDS)

ATGGCCGCATCATCAAGCCCGCGTAATAATAACATCCAAGTACGCTTCGACGGCCCTAAGGCAAAGCAAGCCCAATCGCAGGGCAGTGGCGAGCAAGAAACGCCTAGTTACACCCACCTTAAGCATGACAAAGGGAAGGTGTTACTGGAACCATCACCAGAAATAGATGATTTATGTGATGAATTAGAAGTTGATATGAAGGATAAGGTTGCCGTTTATGCGTTCATCGCTGAACGCAAGAGGAAGCGAAAAAAAGCACAGACGAAAAAGGCAAAGGAGGAACGCCGAAGAAAAGAAGAGTGTGAACAAAGAAAATTCGAGGAACGCCTTGCCTTGAAACAAAAGAAGATCAAAGACAAGCTCTCCAATGTTTCCTTCACTAAGACGCAGGAAACGATAGAGGCGATCAAATCGGTCCTAAAAAGGAAGGAAGAGAAGAAGCAAATGCTCGCGGAATTGAGCGAGCAAGTGGAGGAACTCCTTGCAAAGTGCAAGGCCTTGGGAGTAGAGAGAGACGACCTCGAAGTCATTACTGAGGAATTCGAGGACGAGCTAGAGGTGATGAGTCCAATAGATCAAGGGCCACCGCCTAAGAAACAAAGGGAGGTCGCCAGACCATCTAAAGGAAAAAAGAGAGTTGGGGAATTTGGACCTGAAGAGCCCCTAGTAGGCAGCGAAGCCAAAACGAAAACGCCTTCCATTCACACAATTATAAAAATAAAAAAAGGGTTGTTTCCGTTTAATGGCACTCTCCTAGACTTCCTCTACGCGCAAATCCCTTTCTCTGTCTAG

Protein sequence

MAASSSPRNNNIQVRFDGPKAKQAQSQGSGEQETPSYTHLKHDKGKVLLEPSPEIDDLCDELEVDMKDKVAVYAFIAERKRKRKKAQTKKAKEERRRKEECEQRKFEERLALKQKKIKDKLSNVSFTKTQETIEAIKSVLKRKEEKKQMLAELSEQVEELLAKCKALGVERDDLEVITEEFEDELEVMSPIDQGPPPKKQREVARPSKGKKRVGEFGPEEPLVGSEAKTKTPSIHTIIKIKKGLFPFNGTLLDFLYAQIPFSV
Homology
BLAST of PI0003533 vs. ExPASy TrEMBL
Match: A0A5A7TBU7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold279G00120 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 71/234 (30.34%), Postives = 117/234 (50.00%), Query Frame = 0

Query: 31  EQETPSYTHLKHDKGKVLLEPSPEIDDLCDELEVDMKDKVAVYAFIAERKRKRKKAQTKK 90
           +   P   HLKH+  KVL                           +  R+  +K+ + KK
Sbjct: 93  DDNRPKNKHLKHEANKVL---------------------------VGHREASKKEVERKK 152

Query: 91  AKEERRRKEECEQRKFEERLALKQKKIKDKLSNVSFTKTQETIEAIKSVLKRKEEKKQML 150
            ++E+R+ EE +++K +E  A ++++ K KL+ +  T               K++K++ L
Sbjct: 153 VEDEKRKGEERKKQKKDEDRAQRKEEAKTKLAEIQTT---------------KKKKQETL 212

Query: 151 AELSEQVEELLAKCK-ALGVERDDLEVITEEFEDELEVMSPIDQGPPPKKQR----EVAR 210
           A LSEQVE ++ + K A   E D ++V+ EEF  E+E MSP+   P P+++     E  +
Sbjct: 213 ASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKGLTNIEFPK 272

Query: 211 PSKGKKRVGEFGPEEPLVGSEAKTKTPSIHTIIKIKKGLFPFNGTLLDFLYAQI 260
            SK K++ G   P++   G+  K     +  +IKI+KGL PFN  LL+FLY  I
Sbjct: 273 KSKSKRKAGTSRPKDIQRGN--KMSAQKLDKLIKIEKGLLPFNDPLLNFLYGLI 282

BLAST of PI0003533 vs. ExPASy TrEMBL
Match: A0A5D3DQE7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00740 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = 0

Query: 113 KQKKIKDKLSNVSFTKTQETIEAIKSVLKR----KEEKKQMLAELSEQVEELLAKCK-AL 172
           K K +K + + V     + + +  K+ L      K++K++ LA LSEQVE ++ + K A 
Sbjct: 98  KNKHLKHEANKVLVGHREASKKEAKTKLAEIQTTKKKKQETLASLSEQVESVVTRSKVAE 157

Query: 173 GVERDDLEVITEEFEDELEVMSPIDQGPPPKKQR----EVARPSKGKKRVGEFGPEEPLV 232
             E D ++V+ EEF  E+E MSP+   P P+++     E  + SK K++ G   P++   
Sbjct: 158 HQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKGLTNIEFPKKSKSKRKAGTSRPKDIQR 217

Query: 233 GSEAKTKTPSIHTIIKIKKGLFPFNGTLLDFLYAQI 260
           G+  K     +  +IKI+KGL PFN  LL+FLY  I
Sbjct: 218 GN--KMSAQKLDKLIKIEKGLLPFNDPLLNFLYGLI 251

BLAST of PI0003533 vs. NCBI nr
Match: KAA0038829.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-10
Identity = 71/234 (30.34%), Postives = 117/234 (50.00%), Query Frame = 0

Query: 31  EQETPSYTHLKHDKGKVLLEPSPEIDDLCDELEVDMKDKVAVYAFIAERKRKRKKAQTKK 90
           +   P   HLKH+  KVL                           +  R+  +K+ + KK
Sbjct: 93  DDNRPKNKHLKHEANKVL---------------------------VGHREASKKEVERKK 152

Query: 91  AKEERRRKEECEQRKFEERLALKQKKIKDKLSNVSFTKTQETIEAIKSVLKRKEEKKQML 150
            ++E+R+ EE +++K +E  A ++++ K KL+ +  T               K++K++ L
Sbjct: 153 VEDEKRKGEERKKQKKDEDRAQRKEEAKTKLAEIQTT---------------KKKKQETL 212

Query: 151 AELSEQVEELLAKCK-ALGVERDDLEVITEEFEDELEVMSPIDQGPPPKKQR----EVAR 210
           A LSEQVE ++ + K A   E D ++V+ EEF  E+E MSP+   P P+++     E  +
Sbjct: 213 ASLSEQVESVVTRSKVAEHQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKGLTNIEFPK 272

Query: 211 PSKGKKRVGEFGPEEPLVGSEAKTKTPSIHTIIKIKKGLFPFNGTLLDFLYAQI 260
            SK K++ G   P++   G+  K     +  +IKI+KGL PFN  LL+FLY  I
Sbjct: 273 KSKSKRKAGTSRPKDIQRGN--KMSAQKLDKLIKIEKGLLPFNDPLLNFLYGLI 282

BLAST of PI0003533 vs. NCBI nr
Match: TYK25768.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-07
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = 0

Query: 113 KQKKIKDKLSNVSFTKTQETIEAIKSVLKR----KEEKKQMLAELSEQVEELLAKCK-AL 172
           K K +K + + V     + + +  K+ L      K++K++ LA LSEQVE ++ + K A 
Sbjct: 98  KNKHLKHEANKVLVGHREASKKEAKTKLAEIQTTKKKKQETLASLSEQVESVVTRSKVAE 157

Query: 173 GVERDDLEVITEEFEDELEVMSPIDQGPPPKKQR----EVARPSKGKKRVGEFGPEEPLV 232
             E D ++V+ EEF  E+E MSP+   P P+++     E  + SK K++ G   P++   
Sbjct: 158 HQEVDRVDVMVEEFSREIEGMSPLGPRPRPEEKGLTNIEFPKKSKSKRKAGTSRPKDIQR 217

Query: 233 GSEAKTKTPSIHTIIKIKKGLFPFNGTLLDFLYAQI 260
           G+  K     +  +IKI+KGL PFN  LL+FLY  I
Sbjct: 218 GN--KMSAQKLDKLIKIEKGLLPFNDPLLNFLYGLI 251

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TBU72.9e-1030.34Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DQE73.9e-0734.62Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
KAA0038829.15.9e-1030.34stress response protein NST1-like [Cucumis melo var. makuwa][more]
TYK25768.18.0e-0734.62stress response protein NST1-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..109
NoneNo IPR availableCOILSCoilCoilcoord: 133..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003533.1PI0003533.1mRNA