PI0003519 (gene) Melon (PI 482460) v1

Overview


Name	PI0003519
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 3008575 .. 3008775 (+)
RNA-Seq Expression	PI0003519
Synteny	PI0003519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGAAACAGAAACAGAGGAGCTGGATTCAGTTGAGAAAAGAAGAACAAATAAAGTGGTTCCTTCTTTAAAAAGTTCAACTTTTGATCAAAGAGACGCCAAATCACGAGACGCTTCTGAACTATCTGCACTTTTTCATTGTCTTTCTACTGCCAAACGACCTAATCCTTCTCCTTATCATTATACACAACCGTGA

mRNA sequence

ATGGGAAATGAAACAGAAACAGAGGAGCTGGATTCAGTTGAGAAAAGAAGAACAAATAAAGTGGTTCCTTCTTTAAAAAGTTCAACTTTTGATCAAAGAGACGCCAAATCACGAGACGCTTCTGAACTATCTGCACTTTTTCATTGTCTTTCTACTGCCAAACGACCTAATCCTTCTCCTTATCATTATACACAACCGTGA

Coding sequence (CDS)

ATGGGAAATGAAACAGAAACAGAGGAGCTGGATTCAGTTGAGAAAAGAAGAACAAATAAAGTGGTTCCTTCTTTAAAAAGTTCAACTTTTGATCAAAGAGACGCCAAATCACGAGACGCTTCTGAACTATCTGCACTTTTTCATTGTCTTTCTACTGCCAAACGACCTAATCCTTCTCCTTATCATTATACACAACCGTGA

Protein sequence

MGNETETEELDSVEKRRTNKVVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSPYHYTQP

Homology

[Close]

BLAST of PI0003519 vs. ExPASy TrEMBL
Match: A0A0A0KHR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511840 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MGNETETEELDSVEKRRTNKVVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60
          MGNETETEELDSVEKRRTNK VPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP
Sbjct: 1  MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60

Query: 61 YHYTQP 67
          YH+T+P
Sbjct: 61 YHHTEP 66

[Close]

BLAST of PI0003519 vs. NCBI nr
Match: KGN49068.1 (hypothetical protein Csa_004245 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.6e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MGNETETEELDSVEKRRTNKVVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60
          MGNETETEELDSVEKRRTNK VPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP
Sbjct: 1  MGNETETEELDSVEKRRTNKAVPSLKSSTFDQRDAKSRDASELSALFHCLSTAKRPNPSP 60

Query: 61 YHYTQP 67
          YH+T+P
Sbjct: 61 YHHTEP 66

The following BLAST results are available for this feature:

BLAST of PI0003519 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHR2	2.7e-26	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511840 PE=4 SV=1	[more]

BLAST of PI0003519 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49068.1	5.6e-26	95.45	hypothetical protein Csa_004245 [Cucumis sativus]	[more]

BLAST of PI0003519 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003519.1	PI0003519.1	mRNA