PI0003497 (gene) Melon (PI 482460) v1

Overview


Name	PI0003497
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr08: 22830563 .. 22833799 (-)
RNA-Seq Expression	PI0003497
Synteny	PI0003497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAATAATTGATTGAACCCTTAAATTTATACAATTTTATAATTTGTACAATTATGCCAACCTGAGGGTCTAATTTTTGGACTAGCTCATAATTGCAATGCAACTACAACAATATTTTCTGAGAACTGAGCGCCCTTGATTTCCCGCCCAAGTCTATATAACACCTTCAAACTCCATTCACGTTAAAACCACCTACCATCTCTCCGCCTGCATCCTCTTCCATCGGAACTCGTTGCCCCATCTGGGTCGGGGGCAAGCATGTCATTCAGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCCGTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAGCCATACAGTGAGGTGTTTGGTTTGCTGAGGTTTTGGGTGTGTGAGCTGATCCATGGAAGGTGGGGATGGGGTATGTTGGCTACACTTGGTGCCCTCACTGTTGAGTGCTCACTGGTATCACTTGGCAGTTATCAAGTTTCAACGACTCTAATGGTTAAAACCGGCTATCTTATTTTTCAAAAACCACCAAAAATCAAAAATAGCTTAATTATTTCAAACCGTTTTTAACAGTACGTTATTAGAGGCGAAAAGTTAAACATTAAACGGCCCCTAAACTTTAAAATGTGTTTTAAAGTGAGTTAATGCGATGAAGGTTTTTTATATTTGGTGGATATTGAAATTGCAAAAATATTTCGGTAAAAAGTGTAAGTGAGGTTTAAACATTGGTCTAGAAGGAATTTAGGAGATAGTTTTACTACTAAATTAGTTATTGATAATGATATTATTTTAATTATATATAAAGAGCATGAAGTTGAGAGGAGACTTGAGGTTCGAGTAATTAAAAATAGTAATTAAAAAATAATTAAAAATAGTAACTAAAAAGTAATTAAAAATAGTAATTAAAAAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAAATAATTAAAAATAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAATAGTTAATTGTATGTGAATTTTTGTTTCTGAAGTTTGAGAGGAGACTTGAGTTTTGAGTAATTAAAAAGTAATTAAAAAGTAATTAAAAAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAAGTAATTAAAAATAGTTAATTGTATGTGAATTTTTGTTTCTTTTAAGAACATGACAAATTATTTAACTTTGTTATTAGTATTGTTTCTTTTAAGAACATGACAAATTATTTAACTTTGTTATTAGTAGAGATGACCTCTGATATAGAAATTTCTCCAAACAACCTTTTAAGAAATTTTGAAAATATGGACACAATCTTGAAAAACAGTAAGCCAATGGTTATTTATTTGGGTTTGTGTACTGAATGTTTTTCATAAGTGGGGTTGGAGTAAGTTGATGATCCTTAATCACCTCAATCTCGAGAAAATATGGTGAACTAAAAATGCATTTTGTGGACTTAGACAAGAATTGCTAATTTTTCCAATTTTGTTCAATTTAATGACAAGTGAACTTACACAAAGTCACATTACAAAAAGTGGAGTGTCGAGAAGCAATCAACATATTAGTTTTCAATACCATAATCAAGATAAATTTTTTAGGGAAGAATATGAATTAAGCTCTCTCTATATATAATATTGTGTAGCAGGACTAAGTTTTAGGTTTCTTTGATTCCTTTACAAAAGAACCTTGGAAGGTTGTATAGAACTTGCACAAAGTGCTAGATAGGAGCCAAGGAAAGGGGAGGGGCAAGTTGGCTTTGACCTTAACCTCAAATGTAAGGCATGACAATTGGGTTAGATTATTCAAATTCTTGGTCCATTCTTCTAGGATATCTTTTTTGAACCTATTTTTGGCTCGTTTTAATTTCTTTGAGTTAGGACAACTTTTTCGATTTTACCTTTAAAATTGATTCTCTTCGAACTTTCTCATAGGTCTATAATTATAAAATCGGGTATAAAGTAGGATAAAAAAAAGTTAAAATGTAATTTTGATGATGATGGTGATAACGGTAATAATAATATTTTGGCTTAAATCTTACTTTTGTCACTAAACTTTACATCTTATTCTATTTTGGTCTCTAGATTTTTTAAAAAATCTGTTAGAGTTCGTGAACCTTTAAAAAGAGTTTACTTTGGTCCTTTGTCTTGGATGTTAACACTAACATACAAGTTTGTTTTATTTGATCTTTTATTCTACTCAATATTTTTATGTTTTGCTTCAAGATTTCAATTTTTCTAGAAAGAATAACAAAGAGTGTTGGAGTCGGGAGGGGATGTGAGGAGAAGAGAGTAAAATTAGTTATTTGATTTATTTGATTCAAGTGTTATTAGGTTTTTATGTTGACATAAAATATTTATAAATTTATCAATTTAATTAATATACTAAATCCAGAGTCTTATCTACTCATCGTTAAGTTAATTAATACATAGTGAGTTATTATAATCTGATTAAAATAATTTATGTTTGGAGTGTAAATCATTTTAGTTTGGATTATAATAGTATGTGTTTGATGTATAGACTATTTTAGTTTGATAAGTAATAGTAAGCGTCGTAACAAAAAAAAATAAAAACATTACAGGAAGAAGTGATTATGATAGTCATTGTTAACTTTTGCCCCAAACAAGAGTATTTAAACCTACTCATTTCCAATAAGATTTCAATTTCCATTATTTTTATTGGCTTGTGCTTGTTCGCGCCTTCGTTACTGCGTTAGGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAACGCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGGTAAATTCGACTGTGAAGTTTTTGTCAAATTTCTTCTGATTAGAGTTCGATCTGTATGATATTTGCTTTGATTCTGTTCTGGAAGATAAAAAATCCGAAATGTCAATTGAAAATTTTATATTTGCCAACTTCGAGTTTATTTCATTATAGATTTTTCGATGATGCAGTTCCTGA

mRNA sequence

ATGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCCGTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAGCCATACAGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAACGCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGTTCCTGA

Coding sequence (CDS)

ATGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCCGTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAGCCATACAGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAACGCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGTTCCTGA

Protein sequence

MPTKESVHKVDCGPAAVVPIAVAGWTGAWWGNYGFDPFGVGKPVEYLDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGVVISSGFAQQSLLFNSAIVITVFNCSNAVKEEFLRLAPHRKLAVPLCCVLSNSSS

Homology

[Close]

BLAST of PI0003497 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 14  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRIL 73
           P A+ P     W  G+  G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R  
Sbjct: 60  PGAISP----DWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTE 119

Query: 74  ECEVDTVPAIQVWHQVCGV 85
             +  + P  Q + +V G+
Sbjct: 120 AADAKSTP-FQPYSEVFGI 133

[Close]

BLAST of PI0003497 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-07
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + 
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP-FQPYS 126

[Close]

BLAST of PI0003497 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-06
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + 
Sbjct: 71  GSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP-FQPYT 130

[Close]

BLAST of PI0003497 vs. ExPASy TrEMBL
Match: G3FNQ6 (Chlorophyll a-b binding protein, chloroplastic OS=Dimocarpus longan OX=128017 GN=LCAB3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-08
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQ 62
           TK++  K    P+A  P+   G        G+  G+YGFDPFG+GKPVEY       LDQ
Sbjct: 37  TKKAAPKKFSKPSADRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KNM GD+ G+R+   EV + P  Q + +V G+
Sbjct: 97  NLAKNMAGDIIGTRVESSEVKSTP-FQPYTEVFGL 130

[Close]

BLAST of PI0003497 vs. ExPASy TrEMBL
Match: A0A067JKE4 (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas OX=180498 GN=JCGZ_25025 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P++  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKKSSKPSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNLAGDVIGTRTELADVKSTP-FQPYSEVFGL 129

[Close]

BLAST of PI0003497 vs. ExPASy TrEMBL
Match: B9SQ36 (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RCOM_0644360 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKRSAKPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GD+ G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNIAGDIIGTRTEAADVKSTP-FQPYSEVFGL 129

[Close]

BLAST of PI0003497 vs. ExPASy TrEMBL
Match: A0A6P4AP94 (Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107430831 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 4   KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQN 63
           K+S  K    P++  P+   G T   W      G+YGFDPFG+GKP EY       LDQN
Sbjct: 37  KKSKPKKSIKPSSDRPLWYPGATAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQN 96

Query: 64  LVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           L KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 97  LAKNLAGDVIGTRSEASDVKSTP-FQPYSEVFGL 129

[Close]

BLAST of PI0003497 vs. ExPASy TrEMBL
Match: A0A4S8IDL3 (Chlorophyll a-b binding protein, chloroplastic OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t02650 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S+ K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 37  TKKSLRKKVKAPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN  GDV G+R    +V + P  Q + +V G+
Sbjct: 97  NLAKNSAGDVIGTRTESADVKSTP-FQPYSEVFGL 130

[Close]

BLAST of PI0003497 vs. NCBI nr
Match: AEO51756.1 (chloroplast chlorophyll A/B binding protein [Dimocarpus longan])

HSP 1 Score: 67.8 bits (164), Expect = 8.5e-08
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQ 62
           TK++  K    P+A  P+   G        G+  G+YGFDPFG+GKPVEY       LDQ
Sbjct: 37  TKKAAPKKFSKPSADRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KNM GD+ G+R+   EV + P  Q + +V G+
Sbjct: 97  NLAKNMAGDIIGTRVESSEVKSTP-FQPYTEVFGL 130

[Close]

BLAST of PI0003497 vs. NCBI nr
Match: XP_012087873.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Jatropha curcas] >KDP24461.1 hypothetical protein JCGZ_25025 [Jatropha curcas])

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-07
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P++  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKKSSKPSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNLAGDVIGTRTELADVKSTP-FQPYSEVFGL 129

[Close]

BLAST of PI0003497 vs. NCBI nr
Match: XP_002528105.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Ricinus communis] >EEF34284.1 chlorophyll A/B binding protein, putative [Ricinus communis])

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-07
Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKRSAKPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GD+ G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNIAGDIIGTRTEAADVKSTP-FQPYSEVFGL 129

[Close]

BLAST of PI0003497 vs. NCBI nr
Match: THU46220.1 (hypothetical protein C4D60_Mb09t02650 [Musa balbisiana])

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-07
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S+ K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 37  TKKSLRKKVKAPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN  GDV G+R    +V + P  Q + +V G+
Sbjct: 97  NLAKNSAGDVIGTRTESADVKSTP-FQPYSEVFGL 130

[Close]

BLAST of PI0003497 vs. NCBI nr
Match: XP_015897179.1 (chlorophyll a-b binding protein CP29.2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-07
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 4   KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQN 63
           K+S  K    P++  P+   G T   W      G+YGFDPFG+GKP EY       LDQN
Sbjct: 37  KKSKPKKSIKPSSDRPLWYPGATAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQN 96

Query: 64  LVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           L KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 97  LAKNLAGDVIGTRSEASDVKSTP-FQPYSEVFGL 129

[Close]

BLAST of PI0003497 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 14  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRIL 73
           P A+ P     W  G+  G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R  
Sbjct: 60  PGAISP----DWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTE 119

Query: 74  ECEVDTVPAIQVWHQVCGV 85
             +  + P  Q + +V G+
Sbjct: 120 AADAKSTP-FQPYSEVFGI 133

[Close]

BLAST of PI0003497 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + 
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP-FQPYS 126

[Close]

BLAST of PI0003497 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + 
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP-FQPYS 126

[Close]

BLAST of PI0003497 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + 
Sbjct: 71  GSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP-FQPYT 130

[Close]

BLAST of PI0003497 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + 
Sbjct: 71  GSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP-FQPYT 130

The following BLAST results are available for this feature:

BLAST of PI0003497 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	1.8e-08	43.04	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	4.4e-07	44.62	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	3.7e-06	43.08	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of PI0003497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3FNQ6	4.1e-08	42.11	Chlorophyll a-b binding protein, chloroplastic OS=Dimocarpus longan OX=128017 GN...	[more]
A0A067JKE4	2.7e-07	40.00	Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas OX=180498 GN=J...	[more]
B9SQ36	3.5e-07	38.95	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RC...	[more]
A0A6P4AP94	3.5e-07	40.43	Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba OX=326968 GN=L...	[more]
A0A4S8IDL3	3.5e-07	40.00	Chlorophyll a-b binding protein, chloroplastic OS=Musa balbisiana OX=52838 GN=C4...	[more]

BLAST of PI0003497 vs. NCBI nr


Match Name	E-value	Identity	Description
AEO51756.1	8.5e-08	42.11	chloroplast chlorophyll A/B binding protein [Dimocarpus longan]	[more]
XP_012087873.1	5.5e-07	40.00	chlorophyll a-b binding protein CP29.1, chloroplastic [Jatropha curcas] >KDP2446...	[more]
XP_002528105.1	7.2e-07	38.95	chlorophyll a-b binding protein CP29.1, chloroplastic [Ricinus communis] >EEF342...	[more]
THU46220.1	7.2e-07	40.00	hypothetical protein C4D60_Mb09t02650 [Musa balbisiana]	[more]
XP_015897179.1	7.2e-07	40.43	chlorophyll a-b binding protein CP29.2, chloroplastic [Ziziphus jujuba]	[more]

BLAST of PI0003497 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	1.3e-09	43.04	light harvesting complex photosystem II	[more]
AT3G08940.1	3.1e-08	44.62	light harvesting complex photosystem II	[more]
AT3G08940.2	3.1e-08	44.62	light harvesting complex photosystem II	[more]
AT2G40100.1	2.6e-07	43.08	light harvesting complex photosystem II	[more]
AT2G40100.2	2.6e-07	43.08	light harvesting complex photosystem II	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003497.1	PI0003497.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0009579	thylakoid