PI0003496 (gene) Melon (PI 482460) v1

Overview
NamePI0003496
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr02: 19369866 .. 19370030 (+)
RNA-Seq ExpressionPI0003496
SyntenyPI0003496
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA

mRNA sequence

ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACGCTGACATACTAGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAAAGAATGTTCAGTGATTGGAAGTTGCGTAATCAGTAA

Protein sequence

MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ
Homology
BLAST of PI0003496 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN++I+D++DEGDSTYATTGG+EI+YIE S+ WS+WRD+LA  MFSDW+L+ Q
Sbjct: 271 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQWQ 324

BLAST of PI0003496 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

BLAST of PI0003496 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

BLAST of PI0003496 vs. ExPASy TrEMBL
Match: A0A5D3BQ11 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00510 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRN 54
           MTN DILD++DE DST+ TT G++IHYIET + W+QWRDELA+ MFSDW+LRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

BLAST of PI0003496 vs. ExPASy TrEMBL
Match: A0A5A7U033 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00950 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1  MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
          MTN DILD++DE DST+ TT  ++IHYI+TS+ WSQWRDELA+ MFSDW+LRN+
Sbjct: 1  MTNFDILDDIDEVDSTHETTASDDIHYIDTSNEWSQWRDELADEMFSDWELRNK 54

BLAST of PI0003496 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN++I+D++DEGDSTYATTGG+EI+YIE S+ WS+WRD+LA  MFSDW+L+ Q
Sbjct: 271 MTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELQWQ 324

BLAST of PI0003496 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

BLAST of PI0003496 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MFSDW+LRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

BLAST of PI0003496 vs. NCBI nr
Match: KAA0033880.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRN 54
           MTN DILD++DE DST+ TT G++IHYIET + W+QWRDELA+ MFSDW+LRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

BLAST of PI0003496 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   MTNADILDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWKLRNQ 55
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MF+DW+LRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DG225.7e-1468.52Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BL485.7e-1472.22Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VJX35.7e-1472.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BQ117.4e-1469.81Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7U0337.4e-1468.52Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0062747.11.2e-1368.52retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
KAA0067470.11.2e-1372.22retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ99699.11.2e-1372.22putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0033880.11.5e-1369.81putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nucleas... [more]
KAA0054126.11.5e-1370.37putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003496.1PI0003496.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding