PI0003443 (gene) Melon (PI 482460) v1

Overview
NamePI0003443
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr10: 7739626 .. 7740029 (+)
RNA-Seq ExpressionPI0003443
SyntenyPI0003443
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGATTCCAATTGCGATTCTAGCAGTATCAACCTATCTGATTCTGATTATCCAACAATAAGATATGAAGTTTCCAAATACACCCAGTTAAATGCCCAAAATTCAGATTCCAAATAACAACATAAACAATCGAGAAACCAAATCAGATTTAAATGTAATGGCGTATGGAGGCGGATGAGTGTAGAAGAATTCAGAATGAAGAGCAGAATCAGAAAAGAAGCTGTGTGAGAGCTAAAAATCTGAAGCGATTCATTCGAAAGCACATCACCCGTACTATGAAACCATTTGAAATTTGGTTGTAGAGGGCTGGAGAAGCAGGGCAACCTACAGAGAACCTGCAAGTCCTTCAGAGCCACAGATTTAAACTGCTCTCCCCTTTTAATGCCTCAGCCCTCTCTTGA

mRNA sequence

ATGAACGATTCCAATTGCGATTCTAGCAGTATCAACCTATCTGATTCTGATTATCCAACAATAAGATATGAAGTTTCCAAATACACCCAGGCTGGAGAAGCAGGGCAACCTACAGAGAACCTGCAAGTCCTTCAGAGCCACAGATTTAAACTGCTCTCCCCTTTTAATGCCTCAGCCCTCTCTTGA

Coding sequence (CDS)

ATGAACGATTCCAATTGCGATTCTAGCAGTATCAACCTATCTGATTCTGATTATCCAACAATAAGATATGAAGTTTCCAAATACACCCAGGCTGGAGAAGCAGGGCAACCTACAGAGAACCTGCAAGTCCTTCAGAGCCACAGATTTAAACTGCTCTCCCCTTTTAATGCCTCAGCCCTCTCTTGA

Protein sequence

MNDSNCDSSSINLSDSDYPTIRYEVSKYTQAGEAGQPTENLQVLQSHRFKLLSPFNASALS
Homology
[Close]
BLAST of PI0003443 vs. ExPASy TrEMBL
Match: A0A0A0KPM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G065150 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.6e-18
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 1   MNDSNCDSSSINLSDSDYPTIRYEVSKYT-----------------------QAGEAGQP 60
           MNDSNCDSSSI+LSDS+YPTIRYEVSKYT                       +AGEAGQP
Sbjct: 21  MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLNRAGEAGQP 80

Query: 61  TENLQVLQSHRFKLLSPFNASALS 62
           TENLQVLQSH  KLLSPFNASALS
Sbjct: 81  TENLQVLQSHGLKLLSPFNASALS 104

[Close]
BLAST of PI0003443 vs. NCBI nr
Match: KGN49681.1 (hypothetical protein Csa_018455 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 1   MNDSNCDSSSINLSDSDYPTIRYEVSKYT-----------------------QAGEAGQP 60
           MNDSNCDSSSI+LSDS+YPTIRYEVSKYT                       +AGEAGQP
Sbjct: 21  MNDSNCDSSSIDLSDSNYPTIRYEVSKYTHSNATVSIPINNKSNGETKSDLNRAGEAGQP 80

Query: 61  TENLQVLQSHRFKLLSPFNASALS 62
           TENLQVLQSH  KLLSPFNASALS
Sbjct: 81  TENLQVLQSHGLKLLSPFNASALS 104

The following BLAST results are available for this feature:
BLAST of PI0003443 vs.
Match NameE-valueIdentityDescription
BLAST of PI0003443 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPM59.6e-1866.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G065150 PE=4 SV=1[more]
BLAST of PI0003443 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49681.12.0e-1766.67hypothetical protein Csa_018455 [Cucumis sativus][more]
BLAST of PI0003443 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003443.1PI0003443.1mRNA