PI0003401 (gene) Melon (PI 482460) v1

Overview


Name	PI0003401
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Elf4 domain-containing protein
Location	chr10: 14798440 .. 14798826 (-)
RNA-Seq Expression	PI0003401
Synteny	PI0003401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATAACAATCCCCGCCGCAAATCCAAAATGAAGCCTTCAGCAACCACCACCACCACTACCACCACCACCAGCGACGACGGCCCACGTGACGCTTTCCCTGACGAATACGACGCCGAGGTATGGGCCTCTTTTGACCAAACCTTCCGGCAAGTCCAATCAGTGCTGGACAGAAACAGAACTCTGATTCAACAAGTGAATGAGAATCACCAATCTCGAATCCCAAGCAACATGGTTGACAACGTTGCTTTAATCCAAGAACTTAATGGAAACATCTCTAAAGTTGTTTCCATGTACTCTGATTTCTCCTCTGATTTTTCCACTGCTTTCCATAACCACAAACCCAGAAATGGTAAAAGAGGCACCACCAACCCAGATGCTTGA

mRNA sequence

ATGGCCGATAACAATCCCCGCCGCAAATCCAAAATGAAGCCTTCAGCAACCACCACCACCACTACCACCACCACCAGCGACGACGGCCCACGTGACGCTTTCCCTGACGAATACGACGCCGAGGTATGGGCCTCTTTTGACCAAACCTTCCGGCAAGTCCAATCAGTGCTGGACAGAAACAGAACTCTGATTCAACAAGTGAATGAGAATCACCAATCTCGAATCCCAAGCAACATGGTTGACAACGTTGCTTTAATCCAAGAACTTAATGGAAACATCTCTAAAGTTGTTTCCATGTACTCTGATTTCTCCTCTGATTTTTCCACTGCTTTCCATAACCACAAACCCAGAAATGGTAAAAGAGGCACCACCAACCCAGATGCTTGA

Coding sequence (CDS)

ATGGCCGATAACAATCCCCGCCGCAAATCCAAAATGAAGCCTTCAGCAACCACCACCACCACTACCACCACCACCAGCGACGACGGCCCACGTGACGCTTTCCCTGACGAATACGACGCCGAGGTATGGGCCTCTTTTGACCAAACCTTCCGGCAAGTCCAATCAGTGCTGGACAGAAACAGAACTCTGATTCAACAAGTGAATGAGAATCACCAATCTCGAATCCCAAGCAACATGGTTGACAACGTTGCTTTAATCCAAGAACTTAATGGAAACATCTCTAAAGTTGTTTCCATGTACTCTGATTTCTCCTCTGATTTTTCCACTGCTTTCCATAACCACAAACCCAGAAATGGTAAAAGAGGCACCACCAACCCAGATGCTTGA

Protein sequence

MADNNPRRKSKMKPSATTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGTTNPDA

Homology

[Close]

BLAST of PI0003401 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.9e-23
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 98
           D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 99  MYSDFSSDFSTAFHNHKPRNGKRG 123
           MYSD ++ FS+ FH  K  NG  G
Sbjct: 82  MYSDLNTSFSSGFHGGK--NGHDG 103

[Close]

BLAST of PI0003401 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-15
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 98
           D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 99  MYSDFSSDFSTAFHNHKPRNGKRGTT 125
           +YSD S +F+  F + + R  K G T
Sbjct: 94  IYSDLSLNFAKKF-DQRRRTTKDGDT 118

[Close]

BLAST of PI0003401 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-13
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 37  EYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 96
           + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 97  VSMYSDFSSDFSTAFHNHKPRNGKRGTTN 126
             +Y D S++FS +       +   G  N
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGN 103

[Close]

BLAST of PI0003401 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-12
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 98
           D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S
Sbjct: 16  DGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVAS 75

Query: 99  MYSDFSSDFS 109
           +Y D S  F+
Sbjct: 76  LYGDLSHSFA 85

[Close]

BLAST of PI0003401 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 37  EYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 96
           + D ++  +F ++F QVQ +LD+NR LI ++N+NH+S+   ++  NV LI+ELN NI  V
Sbjct: 18  QMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTV 77

Query: 97  VSMYSDFSSDFS 109
            S+Y D S  F+
Sbjct: 78  ASLYGDLSHSFA 89

[Close]

BLAST of PI0003401 vs. ExPASy TrEMBL
Match: A0A5A7SR92 (Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00230 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.3e-60
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MADNNPRRKSKMKPSA TTTTTTTTTSDD P DAFPDEYDAEVWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 120

Query: 121 KRGTTNPDA 129
           KRGTTNPDA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of PI0003401 vs. ExPASy TrEMBL
Match: A0A1S3CIT1 (uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.3e-60
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MADNNPRRKSKMKPSA TTTTTTTTTSDD P DAFPDEYDAEVWASFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 189

Query: 121 KRGTTNPDA 129
           KRGTTNPDA
Sbjct: 190 KRGTTNPDA 198

[Close]

BLAST of PI0003401 vs. ExPASy TrEMBL
Match: A0A0A0KM35 (Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.1e-59
Identity = 123/129 (95.35%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MADNNPRRKSKMKPSA TTTTTTTTTSDD P  AFPDEYD EVWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRTG 120

Query: 121 KRGTTNPDA 129
           KRGTTNPDA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of PI0003401 vs. ExPASy TrEMBL
Match: A0A6J1GYX8 (protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.6e-52
Identity = 113/129 (87.60%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSA TTTTTTTTTSDDG  D FPDE DA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+N+K RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 120

Query: 121 KRGTTNPDA 129
           KRG++NPDA
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of PI0003401 vs. ExPASy TrEMBL
Match: A0A6J1IH33 (protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 111/129 (86.05%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MA+ N RRKSK KPSA TTTTTTTTTSDDG  D FPDE D +VWASFDQTFRQVQSVLDR
Sbjct: 1   MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+NHK RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNG 120

Query: 121 KRGTTNPDA 129
           KRG++NPDA
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of PI0003401 vs. NCBI nr
Match: KAA0031907.1 (protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 8.8e-60
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MADNNPRRKSKMKPSA TTTTTTTTTSDD P DAFPDEYDAEVWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 120

Query: 121 KRGTTNPDA 129
           KRGTTNPDA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of PI0003401 vs. NCBI nr
Match: XP_008463236.2 (PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 8.8e-60
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MADNNPRRKSKMKPSA TTTTTTTTTSDD P DAFPDEYDAEVWASFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 189

Query: 121 KRGTTNPDA 129
           KRGTTNPDA
Sbjct: 190 KRGTTNPDA 198

[Close]

BLAST of PI0003401 vs. NCBI nr
Match: XP_004149248.1 (protein EARLY FLOWERING 4 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 123/129 (95.35%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MADNNPRRKSKMKPSA TTTTTTTTTSDD P  AFPDEYD EVWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRTG 120

Query: 121 KRGTTNPDA 129
           KRGTTNPDA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of PI0003401 vs. NCBI nr
Match: XP_038892867.1 (protein EARLY FLOWERING 4-like [Benincasa hispida])

HSP 1 Score: 228.4 bits (581), Expect = 3.5e-56
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA--TTTTTTTTTSDDGPRDA-FPDEYDAEVWASFDQTFRQVQSVL 60
           MADNNPRRKSKMKPSA  TTTTTTTTTSDDGP D  FPDEYDAEVWASFDQTFRQVQSVL
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTTSDDGPHDGDFPDEYDAEVWASFDQTFRQVQSVL 60

Query: 61  DRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR 120
           DRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+AF NHKPR
Sbjct: 61  DRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSAFSNHKPR 120

Query: 121 NGKRGTTNPDA 129
           NGKRG+ NP+A
Sbjct: 121 NGKRGSNNPNA 131

[Close]

BLAST of PI0003401 vs. NCBI nr
Match: KAG6600929.1 (Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031565.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MADNNPRRKSKMKPSA-TTTTTTTTTSDDGPRDAFPDEYDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSA TTTTTTTTTSDDG  D FPDE DA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+NHK RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNG 120

Query: 121 KRGTTNPDA 129
           KRG++NPDA
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of PI0003401 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 108.2 bits (269), Expect = 4.9e-24
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 98
           D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 99  MYSDFSSDFSTAFHNHKPRNGKRG 123
           MYSD ++ FS+ FH  K  NG  G
Sbjct: 82  MYSDLNTSFSSGFHGGK--NGHDG 103

[Close]

BLAST of PI0003401 vs. TAIR 10
Match: AT2G29950.1 (ELF4-like 1 )

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 98
           D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 99  MYSDFSSDFSTAFHNHKPRNGKRGTT 125
           +YSD S +F+  F + + R  K G T
Sbjct: 94  IYSDLSLNFAKKF-DQRRRTTKDGDT 118

[Close]

BLAST of PI0003401 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-14
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 37  EYDAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 96
           + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 97  VSMYSDFSSDFSTAFHNHKPRNGKRGTTN 126
             +Y D S++FS +       +   G  N
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGN 103

[Close]

BLAST of PI0003401 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 98
           D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S
Sbjct: 16  DGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVAS 75

Query: 99  MYSDFSSDFS 109
           +Y D S  F+
Sbjct: 76  LYGDLSHSFA 85

[Close]

BLAST of PI0003401 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 98
           D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S
Sbjct: 16  DGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVAS 75

Query: 99  MYSDFSSDFS 109
           +Y D S  F+
Sbjct: 76  LYGDLSHSFA 85

The following BLAST results are available for this feature:

BLAST of PI0003401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04211	6.9e-23	66.67	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	1.8e-15	51.16	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]
Q8S8F5	2.9e-13	39.33	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	7.1e-12	47.14	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	2.3e-10	43.06	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]

BLAST of PI0003401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR92	4.3e-60	96.90	Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CIT1	4.3e-60	96.90	uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=...	[more]
A0A0A0KM35	8.1e-59	95.35	Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 S...	[more]
A0A6J1GYX8	5.6e-52	87.60	protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=...	[more]
A0A6J1IH33	1.1e-50	86.05	protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 ...	[more]

BLAST of PI0003401 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031907.1	8.8e-60	96.90	protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY F...	[more]
XP_008463236.2	8.8e-60	96.90	PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]	[more]
XP_004149248.1	1.7e-58	95.35	protein EARLY FLOWERING 4 [Cucumis sativus]	[more]
XP_038892867.1	3.5e-56	92.37	protein EARLY FLOWERING 4-like [Benincasa hispida]	[more]
KAG6600929.1	1.8e-52	88.37	Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]

BLAST of PI0003401 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40080.1	4.9e-24	66.67	Protein of unknown function (DUF1313)	[more]
AT2G29950.1	1.3e-16	51.16	ELF4-like 1	[more]
AT2G06255.1	2.1e-14	39.33	ELF4-like 3	[more]
AT1G17455.1	5.1e-13	47.14	ELF4-like 4	[more]
AT1G17455.2	5.1e-13	47.14	ELF4-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 38..115 e-value: 2.1E-37 score: 126.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 9..121
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 9..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003401.1	PI0003401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0042803	protein homodimerization activity