PI0003367 (gene) Melon (PI 482460) v1

Overview
NamePI0003367
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr03: 10561037 .. 10561745 (-)
RNA-Seq ExpressionPI0003367
SyntenyPI0003367
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACCATCAGTCTTCTCGTTTGTTTTCATATTGGTTAGTCACATTATCTTGATAGAGTGATTAGAAAGTTTAGTTTTAAACAATATATCCCATCAGAATGCAATATTGAATCATTTTTGCACAACATTGACTTGAGAGTTACGAATTGGTCAAACAAGGTTGCACATTTGATAGTGCAATCGTAATCTAATCTCGTAGAAGATTTATTACGATAGGAGCTTTGATTCAACAATTTGATAGGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAACTGTAGGTCATCTGGTACATATTTAAATATTGTATAATTACTTTAAATTATTTACTCAATTAAATATTTTTTAATTTTTTTTACAATTCACAGAGATCGAACAATAGAAGACTTTGTGATGTTACAGATGATCCACAACAAGTCCTTGATATATGTAATAATAACGAGAGGTACGTGGAGGAGATACATTATATGTATGATATACCTATTGTACCTCCACTAGTTCATTGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTAGAAAAAGTGCCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCAATGATGATGATGCCAGCATTTGGAGCAAGATATTGTGATTCTGAGGTCGGTACATGA

mRNA sequence

ATGGCAGACCATCAGTCTTCTCGTTTGTTTTCATATTGGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAACTGTAGGTCATCTGAGATCGAACAATAGAAGACTTTGTGATGTTACAGATGATCCACAACAAGTCCTTGATATATGTAATAATAACGAGAGGTACGTGGAGGAGATACATTATATGTATGATATACCTATTGTACCTCCACTAGTTCATTGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTAGAAAAAGTGCCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCAATGATGATGATGCCAGCATTTGGAGCAAGATATTGTGATTCTGAGGTCGGTACATGA

Coding sequence (CDS)

ATGGCAGACCATCAGTCTTCTCGTTTGTTTTCATATTGGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAACTGTAGGTCATCTGAGATCGAACAATAGAAGACTTTGTGATGTTACAGATGATCCACAACAAGTCCTTGATATATGTAATAATAACGAGAGGTACGTGGAGGAGATACATTATATGTATGATATACCTATTGTACCTCCACTAGTTCATTGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTAGAAAAAGTGCCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCAATGATGATGATGCCAGCATTTGGAGCAAGATATTGTGATTCTGAGGTCGGTACATGA

Protein sequence

MADHQSSRLFSYWDVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIHYMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARYCDSEVGT
Homology
[Close]
BLAST of PI0003367 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIHWYNNITRLYITRPGA VGHLRSNN RL DV DDPQQVL+ICNNN+RY+EEIH
Sbjct: 112 DVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 171

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MYD+ IVPP VH GRVRVEEAELDEVYHNVE+VP  TQTQSQTGYGSPM MMP FGA Y
Sbjct: 172 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 231

Query: 134 CDSEVGT 141
            DSEVGT
Sbjct: 232 YDSEVGT 238

[Close]
BLAST of PI0003367 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIHWYNNITRLYITRP A VGHLRSNN RL DV DDPQQVL+ICNNN+RY+EEIH
Sbjct: 121 DVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 180

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MYD+ IVPP VH GRVRVEEAELDEVYHNVE+VP  TQTQSQTGYGSPM MMP FGA Y
Sbjct: 181 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 240

Query: 134 CDSEVGT 141
            DSEVGT
Sbjct: 241 YDSEVGT 247

[Close]
BLAST of PI0003367 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.2e-53
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIH YNNITRLYITRPGA VGHLRSNN RL DV +DPQQVLDICNNNERY+E+IH
Sbjct: 289 DVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIH 348

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            +YD+PIVPP VH  R RVEEAELDEVYHNVE+VP  TQTQSQTGYGSPM MMP FGA Y
Sbjct: 349 NIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 408

Query: 134 CDSEV 139
           CDSEV
Sbjct: 409 CDSEV 413

[Close]
BLAST of PI0003367 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 102/126 (80.95%), Postives = 107/126 (84.92%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIHWY+NITRLYITRPGA VG  RSNN RL DV DD QQ LDICNNNERY+EEIH
Sbjct: 13  DVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIH 72

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MYD+PIVPP VH G VRVEEAELD+VYHNVE+VP  TQTQSQTGYGSPM MMP F A Y
Sbjct: 73  NMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGY 132

Query: 134 CDSEVG 140
           CD EVG
Sbjct: 133 CDFEVG 136

[Close]
BLAST of PI0003367 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIH Y NITRLYIT+ GAT    RSNN RL DV DD QQVLDICNNN+R++EEIH
Sbjct: 13  DVTQEYIHSY-NITRLYITQLGAT----RSNNARLRDVADDSQQVLDICNNNKRHMEEIH 72

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MY +PIVPP +H GRV+VEEAELDEVYHNVE++   TQ Q+QTGYGSPM+MMP FG  Y
Sbjct: 73  NMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGY 132

Query: 134 CDSEVGT 141
           CD EV T
Sbjct: 133 CDFEVNT 134

[Close]
BLAST of PI0003367 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 3.2e-55
Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIHWYNNITRLYITRPGA VGHLRSNN RL DV DDPQQVL+ICNNN+RY+EEIH
Sbjct: 112 DVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 171

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MYD+ IVPP VH GRVRVEEAELDEVYHNVE+VP  TQTQSQTGYGSPM MMP FGA Y
Sbjct: 172 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 231

Query: 134 CDSEVGT 141
            DSEVGT
Sbjct: 232 YDSEVGT 238

[Close]
BLAST of PI0003367 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.7e-54
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIHWYNNITRLYITRP A VGHLRSNN RL DV DDPQQVL+ICNNN+RY+EEIH
Sbjct: 121 DVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 180

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MYD+ IVPP VH GRVRVEEAELDEVYHNVE+VP  TQTQSQTGYGSPM MMP FGA Y
Sbjct: 181 NMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 240

Query: 134 CDSEVGT 141
            DSEVGT
Sbjct: 241 YDSEVGT 247

[Close]
BLAST of PI0003367 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIH YNNITRLYITRPGA VGHLRSNN RL DV +DPQQVLDICNNNERY+E+IH
Sbjct: 289 DVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIH 348

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            +YD+PIVPP VH  R RVEEAELDEVYHNVE+VP  TQTQSQTGYGSPM MMP FGA Y
Sbjct: 349 NIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGY 408

Query: 134 CDSEV 139
           CDSEV
Sbjct: 409 CDSEV 413

[Close]
BLAST of PI0003367 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-50
Identity = 102/126 (80.95%), Postives = 107/126 (84.92%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIHWY+NITRLYITRPGA VG  RSNN RL DV DD QQ LDICNNNERY+EEIH
Sbjct: 13  DVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIH 72

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MYD+PIVPP VH G VRVEEAELD+VYHNVE+VP  TQTQSQTGYGSPM MMP F A Y
Sbjct: 73  NMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGY 132

Query: 134 CDSEVG 140
           CD EVG
Sbjct: 133 CDFEVG 136

[Close]
BLAST of PI0003367 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-42
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0 

Query: 14  DVTQEYIHWYNNITRLYITRPGATVGHLRSNNRRLCDVTDDPQQVLDICNNNERYVEEIH 73
           DVTQEYIH Y NITRLYIT+ GAT    RSNN RL DV DD QQVLDICNNN+R++EEIH
Sbjct: 13  DVTQEYIHSY-NITRLYITQLGAT----RSNNARLRDVADDSQQVLDICNNNKRHMEEIH 72

Query: 74  YMYDIPIVPPLVHWGRVRVEEAELDEVYHNVEKVPLVTQTQSQTGYGSPMMMMPAFGARY 133
            MY +PIVPP +H GRV+VEEAELDEVYHNVE++   TQ Q+QTGYGSPM+MMP FG  Y
Sbjct: 73  NMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGY 132

Query: 134 CDSEVGT 141
           CD EV T
Sbjct: 133 CDFEVNT 134

The following BLAST results are available for this feature:
BLAST of PI0003367 vs.
Match NameE-valueIdentityDescription
BLAST of PI0003367 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CH231.6e-5585.04Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TBF81.3e-5484.25Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DJV77.2e-5383.20Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7V3424.4e-5080.95Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7SLF81.5e-4272.44Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of PI0003367 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11193.13.2e-5585.04mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0038951.12.7e-5484.25mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK23842.11.5e-5283.20serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0062642.19.1e-5080.95mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0025972.13.1e-4272.44mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of PI0003367 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003367.1PI0003367.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance