Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATACTTTGCACCATTCCTTGAGGCTGAAAAAAGGGGCGTTCTACAAGAGGCTAAAGATGAAATTAAACGGAGTGAACCATTAGAAAAAGTGGCTCAGATGTCATTGAATAGAGACATGCCCTCTACAACTCAGATCGACGGTTTGCCCAAACTTTTAGAACGAATTCAAAGAAGTCAAGAAAATATGGAAAAAAAAGTGGAAGACATGTATGGATCTTTGAAGATTGTACAGGAGAAGATGAATACAAAGGTTAAAGACCTTGGGAAAACATTGAACAACATTATTGAACACATGAAGAACCAGCAAGCTAGCTCTTCCAATGCACCAACAACTGACGAGTATATGGTAATCATGTAATATACATTGTAATTCATTATGTTTTATTATGCATGTATTTAACAAAAATAGTAAAGTACATTGTAATTGTATATGTGTTTATTATGCGTGTGTTTAACATAATTGTTAAAATACACTGTAATTTCACTCCCAGGTAGCAAAAGACTTCGAGGAACATCTAGACAGAAGCGAGGAGGACCAAGAAGAAAGAGAAGAAGAGAAAACATTGGACATGGAATTAGATGAACCACCTGTGCTTCGAAAATAG
mRNA sequence
ATGCCATACTTTGCACCATTCCTTGAGGCTGAAAAAAGGGGCGTTCTACAAGAGGCTAAAGATGAAATTAAACGGAGTGAACCATTAGAAAAAGTGGCTCAGATGTCATTGAATAGAGACATGCCCTCTACAACTCAGATCGACGGTTTGCCCAAACTTTTAGAACGAATTCAAAGAAGTCAAGAAAATATGGAAAAAAAAGTGGAAGACATGTATGGATCTTTGAAGATTGTACAGGAGAAGATGAATACAAAGGTTAAAGACCTTGGGAAAACATTGAACAACATTATTGAACACATGAAGAACCAGCAAGCTAGCTCTTCCAATGCACCAACAACTGACGAGTATATGGTAGCAAAAGACTTCGAGGAACATCTAGACAGAAGCGAGGAGGACCAAGAAGAAAGAGAAGAAGAGAAAACATTGGACATGGAATTAGATGAACCACCTGTGCTTCGAAAATAG
Coding sequence (CDS)
ATGCCATACTTTGCACCATTCCTTGAGGCTGAAAAAAGGGGCGTTCTACAAGAGGCTAAAGATGAAATTAAACGGAGTGAACCATTAGAAAAAGTGGCTCAGATGTCATTGAATAGAGACATGCCCTCTACAACTCAGATCGACGGTTTGCCCAAACTTTTAGAACGAATTCAAAGAAGTCAAGAAAATATGGAAAAAAAAGTGGAAGACATGTATGGATCTTTGAAGATTGTACAGGAGAAGATGAATACAAAGGTTAAAGACCTTGGGAAAACATTGAACAACATTATTGAACACATGAAGAACCAGCAAGCTAGCTCTTCCAATGCACCAACAACTGACGAGTATATGGTAGCAAAAGACTTCGAGGAACATCTAGACAGAAGCGAGGAGGACCAAGAAGAAAGAGAAGAAGAGAAAACATTGGACATGGAATTAGATGAACCACCTGTGCTTCGAAAATAG
Protein sequence
MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRSQENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAKDFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK
Homology
BLAST of PI0003216 vs. ExPASy TrEMBL
Match:
A0A5D3BKD4 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00150 PE=4 SV=1)
HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 73/153 (47.71%), Postives = 113/153 (73.86%), Query Frame = 0
Query: 2 PYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRSQ 61
PYFA F +A K+ +L+EA+DE+++++ + VA +SLNRDMPST+Q DGL +++E+I+++Q
Sbjct: 151 PYFAQFHKA-KKDILKEAEDELRKTQHSDCVAHVSLNRDMPSTSQTDGLMRIVEKIEKTQ 210
Query: 62 ENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAKD 121
E ME +ED+ LK ++ KMNT+ + LG+ +N IIE ++ QQ SSS A T E+M AK
Sbjct: 211 EKMENSMEDILTFLKSIELKMNTRFEKLGQKMNVIIEAIRTQQPSSSGAQDTYEFMGAKA 270
Query: 122 FEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
F+EHLD+ EEDQEE ++ + L+++L P + K
Sbjct: 271 FKEHLDKVEEDQEE-DDVEDLNLDLSNPTMFGK 301
BLAST of PI0003216 vs. ExPASy TrEMBL
Match:
A0A5D3D818 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00980 PE=4 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 3.2e-25
Identity = 72/154 (46.75%), Postives = 110/154 (71.43%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A +SLNR MPST+ I+ L K++E+ + S
Sbjct: 146 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGINVLTKMVEKFENS 205
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ KMN + K+LG+ +N IIE +++QQ SSS T E+M A+
Sbjct: 206 QQRMETSVEGILEFLKCVELKMNNRFKELGQKMNGIIEAIRSQQCSSSGGQYTHEFMGAR 265
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHLD+ +EDQEE ++ + L+++ P VL K
Sbjct: 266 AFEEHLDKVKEDQEE-DDVEDLNLDSSNPTVLEK 297
BLAST of PI0003216 vs. ExPASy TrEMBL
Match:
A0A5A7TF74 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00140 PE=4 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 3.2e-25
Identity = 72/154 (46.75%), Postives = 110/154 (71.43%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A +SLNR MPST+ I+ L K++E+ + S
Sbjct: 392 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGINVLTKMVEKFENS 451
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ KMN + K+LG+ +N IIE +++QQ SSS T E+M A+
Sbjct: 452 QQRMETSVEGILEFLKCVELKMNNRFKELGQKMNGIIEAIRSQQCSSSGGQYTHEFMGAR 511
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHLD+ +EDQEE ++ + L+++ P VL K
Sbjct: 512 AFEEHLDKVKEDQEE-DDVEDLNLDSSNPTVLEK 543
BLAST of PI0003216 vs. ExPASy TrEMBL
Match:
A0A5A7STD7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2249G00040 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 3.5e-24
Identity = 73/154 (47.40%), Postives = 109/154 (70.78%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A +SLNR MPST+ ID L K++E+I+ S
Sbjct: 175 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGIDVLMKMVEKIENS 234
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ KMN + ++L + +N IIE +K+QQ SSS T ++M A+
Sbjct: 235 QKRMETSVEGILEFLKSVELKMNNRFEELRQKMNGIIEAIKSQQRSSSGGQYTHKFMGAR 294
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHL++ EEDQEE ++ K L++ P VL K
Sbjct: 295 AFEEHLEKVEEDQEE-DDVKHLNLNSSNPTVLGK 326
BLAST of PI0003216 vs. ExPASy TrEMBL
Match:
A0A5A7T3K3 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002030 PE=4 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 5.9e-24
Identity = 69/154 (44.81%), Postives = 112/154 (72.73%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A++SLNR MPST+ ID L K++++I+ S
Sbjct: 195 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIARVSLNRGMPSTSGIDVLTKMVDKIENS 254
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ K+N + ++LG+ +N IIE +++Q+ SSS T ++M A+
Sbjct: 255 QKRMETSVEGILEFLKFVELKLNNRFEELGQKMNRIIEAIRSQKYSSSGGQYTHKFMGAR 314
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHLD+ E+DQEE ++ + L+++ P VL K
Sbjct: 315 AFEEHLDKVEDDQEE-DDVEDLNLDSSNPTVLGK 346
BLAST of PI0003216 vs. NCBI nr
Match:
KAA0037430.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK00223.1 protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 125.9 bits (315), Expect = 2.9e-25
Identity = 73/153 (47.71%), Postives = 113/153 (73.86%), Query Frame = 0
Query: 2 PYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRSQ 61
PYFA F +A K+ +L+EA+DE+++++ + VA +SLNRDMPST+Q DGL +++E+I+++Q
Sbjct: 151 PYFAQFHKA-KKDILKEAEDELRKTQHSDCVAHVSLNRDMPSTSQTDGLMRIVEKIEKTQ 210
Query: 62 ENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAKD 121
E ME +ED+ LK ++ KMNT+ + LG+ +N IIE ++ QQ SSS A T E+M AK
Sbjct: 211 EKMENSMEDILTFLKSIELKMNTRFEKLGQKMNVIIEAIRTQQPSSSGAQDTYEFMGAKA 270
Query: 122 FEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
F+EHLD+ EEDQEE ++ + L+++L P + K
Sbjct: 271 FKEHLDKVEEDQEE-DDVEDLNLDLSNPTMFGK 301
BLAST of PI0003216 vs. NCBI nr
Match:
TYK19697.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 124.8 bits (312), Expect = 6.5e-25
Identity = 72/154 (46.75%), Postives = 110/154 (71.43%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A +SLNR MPST+ I+ L K++E+ + S
Sbjct: 146 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGINVLTKMVEKFENS 205
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ KMN + K+LG+ +N IIE +++QQ SSS T E+M A+
Sbjct: 206 QQRMETSVEGILEFLKCVELKMNNRFKELGQKMNGIIEAIRSQQCSSSGGQYTHEFMGAR 265
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHLD+ +EDQEE ++ + L+++ P VL K
Sbjct: 266 AFEEHLDKVKEDQEE-DDVEDLNLDSSNPTVLEK 297
BLAST of PI0003216 vs. NCBI nr
Match:
KAA0041558.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 124.8 bits (312), Expect = 6.5e-25
Identity = 72/154 (46.75%), Postives = 110/154 (71.43%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A +SLNR MPST+ I+ L K++E+ + S
Sbjct: 392 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGINVLTKMVEKFENS 451
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ KMN + K+LG+ +N IIE +++QQ SSS T E+M A+
Sbjct: 452 QQRMETSVEGILEFLKCVELKMNNRFKELGQKMNGIIEAIRSQQCSSSGGQYTHEFMGAR 511
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHLD+ +EDQEE ++ + L+++ P VL K
Sbjct: 512 AFEEHLDKVKEDQEE-DDVEDLNLDSSNPTVLEK 543
BLAST of PI0003216 vs. NCBI nr
Match:
KAA0033753.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK06532.1 protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 121.3 bits (303), Expect = 7.2e-24
Identity = 73/154 (47.40%), Postives = 109/154 (70.78%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A +SLNR MPST+ ID L K++E+I+ S
Sbjct: 175 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGIDVLMKMVEKIENS 234
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ KMN + ++L + +N IIE +K+QQ SSS T ++M A+
Sbjct: 235 QKRMETSVEGILEFLKSVELKMNNRFEELRQKMNGIIEAIKSQQRSSSGGQYTHKFMGAR 294
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHL++ EEDQEE ++ K L++ P VL K
Sbjct: 295 AFEEHLEKVEEDQEE-DDVKHLNLNSSNPTVLGK 326
BLAST of PI0003216 vs. NCBI nr
Match:
KAA0035989.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 120.6 bits (301), Expect = 1.2e-23
Identity = 69/154 (44.81%), Postives = 112/154 (72.73%), Query Frame = 0
Query: 1 MPYFAPFLEAEKRGVLQEAKDEIKRSEPLEKVAQMSLNRDMPSTTQIDGLPKLLERIQRS 60
MPYFAPF+E EK +L+EA+DE+++++ + +A++SLNR MPST+ ID L K++++I+ S
Sbjct: 195 MPYFAPFIETEK-DILKEAEDELRKTKNSDHIARVSLNRGMPSTSGIDVLTKMVDKIENS 254
Query: 61 QENMEKKVEDMYGSLKIVQEKMNTKVKDLGKTLNNIIEHMKNQQASSSNAPTTDEYMVAK 120
Q+ ME VE + LK V+ K+N + ++LG+ +N IIE +++Q+ SSS T ++M A+
Sbjct: 255 QKRMETSVEGILEFLKFVELKLNNRFEELGQKMNRIIEAIRSQKYSSSGGQYTHKFMGAR 314
Query: 121 DFEEHLDRSEEDQEEREEEKTLDMELDEPPVLRK 155
FEEHLD+ E+DQEE ++ + L+++ P VL K
Sbjct: 315 AFEEHLDKVEDDQEE-DDVEDLNLDSSNPTVLGK 346
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BKD4 | 1.4e-25 | 47.71 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G0... | [more] |
| A0A5D3D818 | 3.2e-25 | 46.75 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00... | [more] |
| A0A5A7TF74 | 3.2e-25 | 46.75 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001... | [more] |
| A0A5A7STD7 | 3.5e-24 | 47.40 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2249G0... | [more] |
| A0A5A7T3K3 | 5.9e-24 | 44.81 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0037430.1 | 2.9e-25 | 47.71 | protein Ycf2-like [Cucumis melo var. makuwa] >TYK00223.1 protein Ycf2-like [Cucu... | [more] |
| TYK19697.1 | 6.5e-25 | 46.75 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
| KAA0041558.1 | 6.5e-25 | 46.75 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
| KAA0033753.1 | 7.2e-24 | 47.40 | protein Ycf2-like [Cucumis melo var. makuwa] >TYK06532.1 protein Ycf2-like [Cucu... | [more] |
| KAA0035989.1 | 1.2e-23 | 44.81 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
