PI0003205 (gene) Melon (PI 482460) v1

Overview


Name	PI0003205
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 8792476 .. 8793616 (-)
RNA-Seq Expression	PI0003205
Synteny	PI0003205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGAGTTGATAAACAGAGTATGGAGGAAACAACCTATGAAATTATAATTCTCAACATCACAGATAATGTACTAAGGCAAGTGATCAATGAAGCTGCATCATATGAATTATGGGAGAAAAGCTTGGGGCTGAAAGTGAGCGACTTCTTACCAAGAAAACTCTATGTAAGAGAGCAACTTTTTTCTTTTAAAATGAATCACTCCAAGACTCTTAATGAGAACTTGGATGAATTCAAGAAACTGACGAACAATTTCAATCAATTGGGAGAAAAGCTTGGGGCTGAAAGTGAGGCTATCATCTTGATAAATTCCTTACATGATACTTACAAAGAAGTGAAATTAGCTTTGAAGTATGGAAGAGAATCAGTTTCAACGGATGTTGTCATTACTGCCTTGAAGAGCAAAGAGTTGGAACTTCAATTAGAGGGAAAGAATGTTGGAGGTGCTAAGTCTCTTTTCTCTAAGGGGAAGAATCAGTTCAAGAAGAATTATTTTAATAAGAACCATAGAAATTATAGAGATAGACCCATCTTGATATGTTTTATTTGTCACAAAGAAGGACATTTCAAGAAGAATTGCCCAAAAAGAGGAAGGCACTATAGAAGAGATGATAATCGAAAATTTAAACCATATGGAAGAGAAGAATCAAACAAGCACATAGATCACAGAAGAGATGACTTAAAGAGGTCTAGGGAACATGGAAGATATCAAGGGCATGCTGGAGAAGAACCTTATGAGTACACTGAGGTACTTGCTGCTACAAATAAAATGACCATGGAAGTTGAAACTGAGGAAGGAGACTGAGTTTTAGACTCAGGTTGTACCTACCATATGACTTCCAAGAAGAGTTGGTTTGTTGACTATAAATCAGAGAAGGAGGCTCAGTTTACATGGGCAATAACAATGAATATGAGATCATCAGAAGAGGCTCAGTACTATTAAGGCTCATATACAGCAATGAGGTTATTTGAGAGATGTTAGACATGTTCCATAACTCAAAAGAAACCTAATTTCTCTAGGAATGCTTGATGATGAGGGATCTAAATTCATTGGAGAAAATGGAGCCTTAAAGGTAGAAAAAGAAGGCAGAATTATCCTAACTGGAAAGAAGCTAGATGGCATCTATGTGTTGAAATGA

mRNA sequence

ATGACTGGAGTTGATAAACAGAGTATGGAGGAAACAACCTATGAAATTATAATTCTCAACATCACAGATAATGTACTAAGGCAAGTGATCAATGAAGCTGCATCATATGAATTATGGGAGAAAAGCTTGGGGCTGAAAGTGAGCGACTTCTTACCAAGAAAACTCTATGTAAGAGAGCAACTTTTTTCTTTTAAAATGAATCACTCCAAGACTCTTAATGAGAACTTGGATGAATTCAAGAAACTGACGAACAATTTCAATCAATTGGGAGAAAAGCTTGGGGCTGAAAGTGAGGCTATCATCTTGATAAATTCCTTACATGATACTTACAAAGAAGTGAAATTAGCTTTGAAGTATGGAAGAGAATCAGTTTCAACGGATGTTGTCATTACTGCCTTGAAGAGCAAAGAGTTGGAACTTCAATTAGAGGGAAAGAATGTTGGAGGTGCTAAGTCTCTTTTCTCTAAGGGGAAGAATCAGTTCAAGAAGAATTATTTTAATAAGAACCATAGAAATTATAGAGATAGACCCATCTTGATATTTTTAGACTCAGGTTGTACCTACCATATGACTTCCAAGAAGAGTTGGTTTGTTGACTATAAATCAGAGAAGGAGGCTCAGTTTACATGGGCAATAACAATGAATATGAGATCATCAGAAGAGGCTCAAAACCTAATTTCTCTAGGAATGCTTGATGATGAGGGATCTAAATTCATTGGAGAAAATGGAGCCTTAAAGGTAGAAAAAGAAGGCAGAATTATCCTAACTGGAAAGAAGCTAGATGGCATCTATGTGTTGAAATGA

Coding sequence (CDS)

ATGACTGGAGTTGATAAACAGAGTATGGAGGAAACAACCTATGAAATTATAATTCTCAACATCACAGATAATGTACTAAGGCAAGTGATCAATGAAGCTGCATCATATGAATTATGGGAGAAAAGCTTGGGGCTGAAAGTGAGCGACTTCTTACCAAGAAAACTCTATGTAAGAGAGCAACTTTTTTCTTTTAAAATGAATCACTCCAAGACTCTTAATGAGAACTTGGATGAATTCAAGAAACTGACGAACAATTTCAATCAATTGGGAGAAAAGCTTGGGGCTGAAAGTGAGGCTATCATCTTGATAAATTCCTTACATGATACTTACAAAGAAGTGAAATTAGCTTTGAAGTATGGAAGAGAATCAGTTTCAACGGATGTTGTCATTACTGCCTTGAAGAGCAAAGAGTTGGAACTTCAATTAGAGGGAAAGAATGTTGGAGGTGCTAAGTCTCTTTTCTCTAAGGGGAAGAATCAGTTCAAGAAGAATTATTTTAATAAGAACCATAGAAATTATAGAGATAGACCCATCTTGATATTTTTAGACTCAGGTTGTACCTACCATATGACTTCCAAGAAGAGTTGGTTTGTTGACTATAAATCAGAGAAGGAGGCTCAGTTTACATGGGCAATAACAATGAATATGAGATCATCAGAAGAGGCTCAAAACCTAATTTCTCTAGGAATGCTTGATGATGAGGGATCTAAATTCATTGGAGAAAATGGAGCCTTAAAGGTAGAAAAAGAAGGCAGAATTATCCTAACTGGAAAGAAGCTAGATGGCATCTATGTGTTGAAATGA

Protein sequence

MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQLFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYGRESVSTDVVITALKSKELELQLEGKNVGGAKSLFSKGKNQFKKNYFNKNHRNYRDRPILIFLDSGCTYHMTSKKSWFVDYKSEKEAQFTWAITMNMRSSEEAQNLISLGMLDDEGSKFIGENGALKVEKEGRIILTGKKLDGIYVLK

Homology

[Close]

BLAST of PI0003205 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.2e-10
Identity = 44/173 (25.43%), Postives = 88/173 (50.87%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           M   D   ++E     I L+++D+V+  +I+E  +  +W +   L +S  L  KLY+++Q
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
           L++  M+       +L+ F  L      LG K+  E +AI+L+NSL  +Y  +   + +G
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHG 166

Query: 121 RESVSTDVVITALKSKELELQLEGKNVGGAKSLFSKGKNQFKKNYFNKNHRNY 174
           + ++    V +AL   E +++ + +N G A     +G++      + ++  NY
Sbjct: 167 KTTIELKDVTSALLLNE-KMRKKPENQGQALITEGRGRS------YQRSSNNY 212

[Close]

BLAST of PI0003205 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 132/312 (42.31%), Postives = 190/312 (60.90%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           +T  +++++EE  Y  +I+NITDNVLRQVI E  ++  WEK   L     LP K++++E+
Sbjct: 47  LTKSERETLEEVAYSTLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEK 106

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
           LFSFK N +K L+ENLDEFKKLTN  NQ GEKLGAE+EA ILINS+HDTYKEVK  LKYG
Sbjct: 107 LFSFKKNQNKNLDENLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLKYG 166

Query: 121 RESVSTDVVITALKSKELELQLEGKNVGGAKSL-FSKGKNQFKKNY----FNKNHRNYRD 180
           RE+++ + VIT LKSKELEL+ E K    A+   F + +N+  + Y    FN+N  + R+
Sbjct: 167 RETITVNSVITTLKSKELELKTENKTSNAAEGKNFRRDENRRYRPYGREDFNRNRNHQRE 226

Query: 181 ------------RPI--------------------------LIFLDSGCTYHMTSKKSWF 240
                       RP+                           + LDSGCTYHMTSKK+WF
Sbjct: 227 DRRRGREHGRDHRPVGNEAFEYTEVLAATNKKAMEIETEEEDLVLDSGCTYHMTSKKNWF 286

Query: 241 VDYKSEKEAQFTWAITMNMRSSEEAQNLISLG--MLDDEGSKFIGENGALKVEKEGRIIL 268
           VDYKS++        ++ M ++++ + +I +G  +L    ++ +   G   VE++GR+IL
Sbjct: 287 VDYKSQE------GDSVYMGNNQDCE-IIGVGSVLLKLSSNREVLLKG---VERQGRVIL 346

[Close]

BLAST of PI0003205 vs. ExPASy TrEMBL
Match: A0A5A7TAZ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00070 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 117/146 (80.14%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           M  VDKQSMEETTYEI+ILNITDNVLRQVINE  +YE+ EK   L     LP KLY+RE+
Sbjct: 47  MNEVDKQSMEETTYEILILNITDNVLRQVINENTTYEICEKLTALYDKKDLPSKLYMREK 106

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
           LFSFKMN SKTLNENLDEFKKLTN FNQLGEKL AESEA I INSLHDTYKEVK  LKYG
Sbjct: 107 LFSFKMNQSKTLNENLDEFKKLTNEFNQLGEKLRAESEAAIFINSLHDTYKEVKSTLKYG 166

Query: 121 RESVSTDVVITALKSKELELQLEGKN 147
           RESV  DVVITALKSKELELQLE KN
Sbjct: 167 RESVLVDVVITALKSKELELQLEEKN 192

[Close]

BLAST of PI0003205 vs. ExPASy TrEMBL
Match: A0A5D3DWH4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00130 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 9.9e-51
Identity = 115/146 (78.77%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           MT VDKQSMEETTYEI+ILNITDNV RQVINE  +YE+WEK   L     LP KLY+R+ 
Sbjct: 59  MTEVDKQSMEETTYEILILNITDNVPRQVINENTTYEIWEKLTALYDKKDLPSKLYMRD- 118

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
            FS KMN SKTLNENLDEFKKLTN FNQLGEKL AESEA I INSLHDTYKEVK  LKYG
Sbjct: 119 -FSLKMNQSKTLNENLDEFKKLTNEFNQLGEKLRAESEAAIFINSLHDTYKEVKSTLKYG 178

Query: 121 RESVSTDVVITALKSKELELQLEGKN 147
           RESV  DVVITALKSKELELQLE KN
Sbjct: 179 RESVLVDVVITALKSKELELQLEEKN 202

[Close]

BLAST of PI0003205 vs. ExPASy TrEMBL
Match: A0A5D3DVM0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00690 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 6.0e-48
Identity = 106/179 (59.22%), Postives = 132/179 (73.74%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           +T  +++++EE  Y  +I+NITDNVLRQVI E   +  WE    L     L  K+++RE+
Sbjct: 47  LTKSERETLEEVAYSTLIMNITDNVLRQVIEETTGFATWEILKSLYEKKDLSNKMFIREK 106

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
           LFSFKMN +K L+ENLDEFKKLTN  NQ  EKLGAESEA ILIN +HDTYKEVK +LKYG
Sbjct: 107 LFSFKMNQNKNLDENLDEFKKLTNALNQTREKLGAESEAAILINLIHDTYKEVKTSLKYG 166

Query: 121 RESVSTDVVITALKSKELELQLEGKNVGGAKSLFSKGKNQFKKNYFNKNHRNYRDRPIL 180
           RE+++ + VITALKSKELEL+ E K    A+SLFSKG N F+KN  NKN R+ RD+P L
Sbjct: 167 RETITVNSVITALKSKELELKTENKTSNAAESLFSKGNNSFRKN-SNKNQRSSRDKPAL 224

[Close]

BLAST of PI0003205 vs. ExPASy TrEMBL
Match: A0A5D3CPM8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00430 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-41
Identity = 114/280 (40.71%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 14  YEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQLFSFKMNHSKTLN 73
           + +++L +      +VI E  ++  WEK   L     LP K+++RE+LFSFKMN +K L+
Sbjct: 583 FRVVVLPLVLERGLKVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLD 642

Query: 74  ENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYGRESVSTDVVITAL 133
           ENLDEFKK TN  NQ  EKLGA  EA ILINS+HDTYKEVK ALKYGRE+++ + VITAL
Sbjct: 643 ENLDEFKKFTNALNQTREKLGA-GEAAILINSIHDTYKEVKTALKYGRETITVNSVITAL 702

Query: 134 KSKELELQLEGKNVGGAKSLFSKGKNQFKKNYFNKNHRNYRDRPIL-------------- 193
           KSKELEL+ E K    A+SLFSKGKN F+KN  NKN R+ +D+P L              
Sbjct: 703 KSKELELKTENKTSNAAESLFSKGKNSFRKN--NKNQRSSKDKPALKCFICHKEGHFKRN 762

Query: 194 ------------------------------------------------------------ 205
                                                                       
Sbjct: 763 CPDRGKNFRRDENRRYRPYGREDFNRNRNYQREDRRRGREHGRDHGPVGNEAFEYTEVLV 822

[Close]

BLAST of PI0003205 vs. NCBI nr
Match: KAA0051442.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22211.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-53
Identity = 132/312 (42.31%), Postives = 190/312 (60.90%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           +T  +++++EE  Y  +I+NITDNVLRQVI E  ++  WEK   L     LP K++++E+
Sbjct: 47  LTKSERETLEEVAYSTLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEK 106

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
           LFSFK N +K L+ENLDEFKKLTN  NQ GEKLGAE+EA ILINS+HDTYKEVK  LKYG
Sbjct: 107 LFSFKKNQNKNLDENLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLKYG 166

Query: 121 RESVSTDVVITALKSKELELQLEGKNVGGAKSL-FSKGKNQFKKNY----FNKNHRNYRD 180
           RE+++ + VIT LKSKELEL+ E K    A+   F + +N+  + Y    FN+N  + R+
Sbjct: 167 RETITVNSVITTLKSKELELKTENKTSNAAEGKNFRRDENRRYRPYGREDFNRNRNHQRE 226

Query: 181 ------------RPI--------------------------LIFLDSGCTYHMTSKKSWF 240
                       RP+                           + LDSGCTYHMTSKK+WF
Sbjct: 227 DRRRGREHGRDHRPVGNEAFEYTEVLAATNKKAMEIETEEEDLVLDSGCTYHMTSKKNWF 286

Query: 241 VDYKSEKEAQFTWAITMNMRSSEEAQNLISLG--MLDDEGSKFIGENGALKVEKEGRIIL 268
           VDYKS++        ++ M ++++ + +I +G  +L    ++ +   G   VE++GR+IL
Sbjct: 287 VDYKSQE------GDSVYMGNNQDCE-IIGVGSVLLKLSSNREVLLKG---VERQGRVIL 346

[Close]

BLAST of PI0003205 vs. NCBI nr
Match: KAA0040138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-52
Identity = 117/146 (80.14%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           M  VDKQSMEETTYEI+ILNITDNVLRQVINE  +YE+ EK   L     LP KLY+RE+
Sbjct: 47  MNEVDKQSMEETTYEILILNITDNVLRQVINENTTYEICEKLTALYDKKDLPSKLYMREK 106

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
           LFSFKMN SKTLNENLDEFKKLTN FNQLGEKL AESEA I INSLHDTYKEVK  LKYG
Sbjct: 107 LFSFKMNQSKTLNENLDEFKKLTNEFNQLGEKLRAESEAAIFINSLHDTYKEVKSTLKYG 166

Query: 121 RESVSTDVVITALKSKELELQLEGKN 147
           RESV  DVVITALKSKELELQLE KN
Sbjct: 167 RESVLVDVVITALKSKELELQLEEKN 192

[Close]

BLAST of PI0003205 vs. NCBI nr
Match: TYK27655.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-50
Identity = 115/146 (78.77%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           MT VDKQSMEETTYEI+ILNITDNV RQVINE  +YE+WEK   L     LP KLY+R+ 
Sbjct: 59  MTEVDKQSMEETTYEILILNITDNVPRQVINENTTYEIWEKLTALYDKKDLPSKLYMRD- 118

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
            FS KMN SKTLNENLDEFKKLTN FNQLGEKL AESEA I INSLHDTYKEVK  LKYG
Sbjct: 119 -FSLKMNQSKTLNENLDEFKKLTNEFNQLGEKLRAESEAAIFINSLHDTYKEVKSTLKYG 178

Query: 121 RESVSTDVVITALKSKELELQLEGKN 147
           RESV  DVVITALKSKELELQLE KN
Sbjct: 179 RESVLVDVVITALKSKELELQLEEKN 202

[Close]

BLAST of PI0003205 vs. NCBI nr
Match: TYK27723.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-47
Identity = 106/179 (59.22%), Postives = 132/179 (73.74%), Query Frame = 0


Query: 1   MTGVDKQSMEETTYEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQ 60
           +T  +++++EE  Y  +I+NITDNVLRQVI E   +  WE    L     L  K+++RE+
Sbjct: 47  LTKSERETLEEVAYSTLIMNITDNVLRQVIEETTGFATWEILKSLYEKKDLSNKMFIREK 106

Query: 61  LFSFKMNHSKTLNENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYG 120
           LFSFKMN +K L+ENLDEFKKLTN  NQ  EKLGAESEA ILIN +HDTYKEVK +LKYG
Sbjct: 107 LFSFKMNQNKNLDENLDEFKKLTNALNQTREKLGAESEAAILINLIHDTYKEVKTSLKYG 166

Query: 121 RESVSTDVVITALKSKELELQLEGKNVGGAKSLFSKGKNQFKKNYFNKNHRNYRDRPIL 180
           RE+++ + VITALKSKELEL+ E K    A+SLFSKG N F+KN  NKN R+ RD+P L
Sbjct: 167 RETITVNSVITALKSKELELKTENKTSNAAESLFSKGNNSFRKN-SNKNQRSSRDKPAL 224

[Close]

BLAST of PI0003205 vs. NCBI nr
Match: TYK12279.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 5.0e-41
Identity = 114/280 (40.71%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 14  YEIIILNITDNVLRQVINEAASYELWEKSLGLKVSDFLPRKLYVREQLFSFKMNHSKTLN 73
           + +++L +      +VI E  ++  WEK   L     LP K+++RE+LFSFKMN +K L+
Sbjct: 583 FRVVVLPLVLERGLKVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLD 642

Query: 74  ENLDEFKKLTNNFNQLGEKLGAESEAIILINSLHDTYKEVKLALKYGRESVSTDVVITAL 133
           ENLDEFKK TN  NQ  EKLGA  EA ILINS+HDTYKEVK ALKYGRE+++ + VITAL
Sbjct: 643 ENLDEFKKFTNALNQTREKLGA-GEAAILINSIHDTYKEVKTALKYGRETITVNSVITAL 702

Query: 134 KSKELELQLEGKNVGGAKSLFSKGKNQFKKNYFNKNHRNYRDRPIL-------------- 193
           KSKELEL+ E K    A+SLFSKGKN F+KN  NKN R+ +D+P L              
Sbjct: 703 KSKELELKTENKTSNAAESLFSKGKNSFRKN--NKNQRSSKDKPALKCFICHKEGHFKRN 762

Query: 194 ------------------------------------------------------------ 205
                                                                       
Sbjct: 763 CPDRGKNFRRDENRRYRPYGREDFNRNRNYQREDRRRGREHGRDHGPVGNEAFEYTEVLV 822

The following BLAST results are available for this feature:

BLAST of PI0003205 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.2e-10	25.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of PI0003205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6R2	1.2e-53	42.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TAZ3	1.4e-52	80.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DWH4	9.9e-51	78.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DVM0	6.0e-48	59.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CPM8	2.4e-41	40.71	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of PI0003205 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051442.1	2.6e-53	42.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0040138.1	2.8e-52	80.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK27655.1	2.0e-50	78.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK27723.1	1.2e-47	59.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12279.1	5.0e-41	40.71	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0003205 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 11..138 e-value: 2.1E-17 score: 63.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003205.1	PI0003205.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding