PI0003199 (gene) Melon (PI 482460) v1

Overview


Name	PI0003199
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr03: 19142992 .. 19144344 (-)
RNA-Seq Expression	PI0003199
Synteny	PI0003199

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGTTGTCGGGGAGCGACGGTAAGTTTTCTTAAACTCTTTTTAGGTTTAATTTCTTTTTAGCTTCTTGATTCTATATTCAATTTGTACAAAAAAATTTAAACCAAAATGAGAAAGTTAGTTTTGAATATTCTTTTTCTCTCCCTTACTTTGCATGTCCCGCTCTTTCAATCCTCACTTACATTTCTTCGAAGATCTCAATAGGGAAGTGCGTAGAATTAGGAGAGAAATGAGAGAAGAAAATAACCAAGATATTCCTCAAGAGCCTTTAGAAAACCAAGAGCCTACTTTAGAAAACCAAAACCTTGATAGACAAACCATGGGCCAAGTTAGAGAAAAAACCTTAAGAGAACTCTCTGAACCTGACGAAGACCAAAGGCCGCTTTGTATAGTTATTCCCCCAACAACTCAACCCTTTGAGCTAAAACCTGGACTAATCCATCTTTTACCTATATTCAAGGGTAGTTCAGGCGAAGACCCCCATAAACACCTCAAAGACTTTCATATGGTTTGTGACTTAATGAGACCCCACGGAGTTTCAGAAGAACAACTCAACTTGAGAGCCTTTCCATTTTCCTTAACCGACACAGCAAAAAGATGGCTTTACTACCTAGAGCCAAGGTCTATAACCACTTGGGAAGCCTTAAAAAGAAATTCCTAGAAAAGTTCTTCCCTGTTTCTAGAGCAAATAATATTAGGAAGGAAATCTACGGAATTAGGCAAGCCTTTGGAGAGTCATTGTCAGAATACTGGGAGCGCTTTAAGGAACTCTGTTCTAGCTTTCCCCATCACCATATTTCTGATCCTTCATTAATACAGTATTTTTATTCTGGACTGCTAACCATGGATAGAAATACAGTAGATGCAGCAACAGGTGGCGCTTTAGCTGATAAGACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGCCGAAAATTCACAGAATTTTGGCAACAGGGCATCCAAGCTCGACAATTCATTGACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACCTTATTAACCTCTTTTGTGCAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTTGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGTAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACAACCAACGACCCGCACAAGCAACTTCATCTTCAAATAATCAAGGTACAAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATATCTTAA

mRNA sequence

ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTTGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGTAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACAACCAACGACCCGCACAAGCAACTTCATCTTCAAATAATCAAGGTACAAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATATCTTAA

Coding sequence (CDS)

ATGGCGCCGTTGTCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTTGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGTAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACAACCAACGACCCGCACAAGCAACTTCATCTTCAAATAATCAAGGTACAAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATATCTTAA

Protein sequence

MAPLSGSDGGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS

Homology

[Close]

BLAST of PI0003199 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.0e-38
Identity = 72/98 (73.47%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDPH NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 212 HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 249

[Close]

BLAST of PI0003199 vs. ExPASy TrEMBL
Match: A0A5A7UAL2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001750 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.5e-37
Identity = 70/98 (71.43%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVCCL+GHPNDKCP+++E+VN++RKYDPH NTYN GWRDNPNLRWGNDNQ+
Sbjct: 43  GTPLKVTKCGVCCLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLGWRDNPNLRWGNDNQK 102

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KAL T T+SFQ EMKQQ++
Sbjct: 103 HTQAPPTSSNQGTNLEDIIKALITKTLSFQQEMKQQMT 140

[Close]

BLAST of PI0003199 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.5e-37
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 108

[Close]

BLAST of PI0003199 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.5e-37
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 108

[Close]

BLAST of PI0003199 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.4e-37
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 127 HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 164

[Close]

BLAST of PI0003199 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 72/98 (73.47%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDPH NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 212 HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 249

[Close]

BLAST of PI0003199 vs. NCBI nr
Match: KAA0050529.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-37
Identity = 70/98 (71.43%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVCCL+GHPNDKCP+++E+VN++RKYDPH NTYN GWRDNPNLRWGNDNQ+
Sbjct: 43  GTPLKVTKCGVCCLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLGWRDNPNLRWGNDNQK 102

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KAL T T+SFQ EMKQQ++
Sbjct: 103 HTQAPPTSSNQGTNLEDIIKALITKTLSFQQEMKQQMT 140

[Close]

BLAST of PI0003199 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 108

[Close]

BLAST of PI0003199 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN+++KYDPH NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 108

[Close]

BLAST of PI0003199 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 9   GGNMKVAKCGVCCLIGHPNDKCPDLVEEVNVIRKYDPHSNTYNAGWRDNPNLRWGNDNQR 68
           G  +KV KCGVC L+GHPNDKCP+++E+VN++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  PAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQIS 107
             QA  +S+NQGTNLED++KALATNT+SFQ EMKQQ++
Sbjct: 127 HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMT 164

The following BLAST results are available for this feature:

BLAST of PI0003199 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003199 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRR8	5.0e-38	73.47	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UAL2	2.5e-37	71.43	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DCG3	5.5e-37	71.43	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S4E3R2	5.5e-37	71.43	uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=...	[more]
E5GBZ4	9.4e-37	71.43	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of PI0003199 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047407.1	1.0e-37	73.47	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
KAA0050529.1	5.1e-37	71.43	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_016902871.1	1.1e-36	71.43	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
KAA0051761.1	1.1e-36	71.43	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos...	[more]
ADN33993.1	1.9e-36	71.43	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]

BLAST of PI0003199 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003199.1	PI0003199.1	mRNA