PI0003166 (gene) Melon (PI 482460) v1

Overview
NamePI0003166
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr03: 24112111 .. 24116280 (+)
RNA-Seq ExpressionPI0003166
SyntenyPI0003166
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATCCCGAACATGGTTCATCTATATGTGAATGTGAGCAGGACGAGTTTGGATATAAACTTGAATTCCAAACCATTCGGTCAGTTTGAAGATCGAACTCAGGTTGTTGACCCTAATTCAGAACCAGTTGCATCGTCGATAAACGACGATGAAGAAATGGTAGCTAATAATGACTATAGGGACTTTCGAACAGAAACGGATGATGAGTTTGAAGAGTTTGACTTTGACGGTCGTGAACATGAATTACCATCAAATACATTCACTCAATTAGATATGGATGCAATAAACAGTATTCGTGAGCACGACCCAGTTGTAGCCCCCGTGGATGTTGACAGTACAGAACTGTACAAGGGAATGATATGTGAAGATAAAGAAACACTTAAACATATGGTGAAATGTTTTGCTATCAAGAATCACTCACCATATGAGGTAGTGGAATCAACACCAACTATTTGGGCAATTCGATGTAAGAAGTGGTCAGAATGTTGCATGTGGAGACTCCGTGCATCGAAGAAAAAATCACATGGTCTGTTCGAGATTACTAAATTATTTGCCCAACACACGTGTTTTTATTCAGAACTCAGTCAGACACATGTACAGTTGGATTCTTTACTGATGGCCCGAGAGTTTGTGATGCCGTAAAAGAAAAACCGTCAATCAGCATCGGATAACTACAGTCCGACATCAAAACATAAATTTGGATATCATGTTCCTTATCACAGGGCGTGGGATGGTAAAAGAAAAGCGGTGGCCAAAGTCTTCGGTGATTGGGACAAATCGTATCAACTTTTGCCCAAGTGGTTATCTATGGTTAAACATACCAATCCTGAAACATCCGTGGAATGGAGGGTACAAGAGACACAAACGAAAGGACATGTTATTCTCACTTCTGTATTTTGGGCATTTGGGCCTTGTATAGAAGCTTTTAGTAGATGTCGACCGACTATCCAGATAGATGACACTCACTTATACAGTAAATATCAAGGCAAGTTGCTAATAGCCACATCCGTCGACTCAAACGGACATCTTCTCCCACTTGCATTTGCTGTTGTAGAGGAGGAGACTGCAGATTCCTAGGGGTGGTTTTTGCAGCACCTTAAAAAATTGTATCTCATGATAAGGTGTGTTTGGTTTCAGATCGAAATGCTGGCATTATATCGGCCGTAAACAATCCAGCTAACGGATGGACAAGACCTCAGTATCACCATAGGTTCTGTTTGCGTCATATTGTCAGTAACTTCAATAAAAGGTTTAAGTTTAATACATTGAAAAATTATGTATATCGTGCCGGATGTCAATTCCAAATCCGTAAATTTAATAAAACAATTGAGGACATCAGGCGAATTAACAACAACTGTTTGAGCTTTTTTGACGACATTAATATCGAACAATGGATTCAAGCACACGATGATGGATTTAGGTACGGGTGGATGACGACAAATCTATCCGAGTGCATGAACGGAGTCCTAAAAGGAGCGCGAATGTTGCCGATCAATGCTCTTGCTCAAGCAACGTTTTATAAATGTGTCAATTATTTTGAGAAACAAAGAGAAGAAATCAGAGTTGCATTGGAGCGTCGAGACAAGTACACTTGGTAATAATTTATGTTTCTAACTTGCAATTACTTATGTATGGATTTACGGTACTAAGTGAAGTCACTATTCAGGTACGCACTTGAAAAAATCTTGAAATGGACTGTAAGATCTAGTAAACATGAGGTACAGTCATACGATCGACATGAAGGCGTGTTTCATGTGCAAATCGGACGTCATAGCCTTAATGCGAAAGGAAGAAATATTCAAGTATTAAGGTTGAATGCATTAGAGTGATATTGTTCGTGTAACAAATGGCAAGTCTTTGGCATACTGTGCTCGCATTTTATGGTCGTCTGTTCACGATTTAACATGAATTACGAAGATTTTATTGAGGACTCTTACAAACTTTCAACCTATGCTTTATGTTACTCTCCTCAGTTTCAGCCTGTACCACATCAAGATTATTGGATCACACCTGTTATGCTCGTCTTACATCCCGATCCATCATTGTTGAGAAAACTCGATCGATCAAAGAGTTCACGATATCATAATGAGATGGATTGGAGGGAACCAAGTGCGCAAGTGCAATGTGGATTTTGTAGTCAACGAGGTCACAATTGAAGGAGATGTCCGTTGCTACAGAGACGAGCACCAGACTATTAAAAAATTAAGTACTTGATTTTTTTAATGTGTACTAAGTGGTTTGATAAACTTATTTCATACAATCTATTTATCCTTATTTCAAACAATCTATTTATCCTTTGTAATTATTATTATTTTTTAGTTAATATTTAGTATCGTCACTTTTAACCTTAATGATTTTATGTCCTAATTAGTATTTTCTGTGTAGATTATGGCTTTAAATCCAGGACCGATTAATCCTAATGTTTTGTATGATCAATCTTTTCATCGATCTACGATTGTATGGGACGATAGAACGATACGTGAACTAGGTTGTATACGTAAAGAGGCGGTAGTCCAACGCAATATCCCTCTTCACCATAACATATTGCCTCTACTTCAAGCTTCAGGATTTTATGGGGTGGCTAGATTGGGTTTCATCCAATTAGATTGACACCTTATTACTGCACTCGTTGAAAGGTGGAGACCGGAAACACATACATTTCATATGCCCACTAAAGAGTGCACTATCACCTTGCAGGACGTAGAAGTATTGTTAGAAATATCTGTCGATGGGGAACCTGTTATCAATTAGGTGCGTGAAGACTGACTTAATTTGTGTCATATGTTCCTTGGTGTGATACCATCTGCTAATAAAATAAAGGGATCAAGATTAAGTCTTAGGTGGTTAGCGGCAGAATTTTTTGGACTTGATGATGATGCAGAAGAGGAAAGTGTCATCAGATATGCAAGAGCATACATTCTACAACTAATGGGTGGGAGTCTATTTTCTGAAAAATCGGATCGGTTTGTACATCTGATTTTCCTGCCATTATTGAGCGATTTACATGAGGCGGGTCGATACTCATGGGGTGGAGCGTGTTTGGCATGGTTGTACAGACAACTATACAAAGCAGCAAAATGAGATGTTCGTGAAATTGCTGGTCCGTTGATACTGCTTCAAATATGGGCTTGGGAACGATTCCCCATAATGGCTCCACAACTAAGACATGCAAAAAATCATCTACTACCTAGACGAGCACACGGTTCACGATATGCTATTTTATTTTAATTTAGATCAAACAATAGTTTTAATACTAAATGAGTGATATAATTAATTCAAAACCTAAAATATTAGTTTATTAATACAGATGGAGAGACCAATTTTGTGTAACAAGATCAGCTACTCATGTAGTTAGTCAATATAGGTACATGTTTGATCTTCTTCAACGTGATCAAGTACATCAATACTAAAGCTTTAATTTTTTTATACATTAGTATACATATATTTAGTGATTTTTAATGTAATGTGTGATATTTCAGATTATTTAGGAGCCTTACAAAAATGTAATACATAATTTATCCAATTTCTGTAAGAATGGTCAACATATATGGATGACCATCAGTCCTCTCATATGTTTTCATATTGGTGAGTAGCATTATCATGATAGGGTGATCAGACAATTTGGTTTTAAACAAAATGTCTCATCAAAATGCAATATTGAGCCACTCATGCACAATATTGACTTGAGAGCCACAAATTGGTCAGACAAGGTTGCACATTTGGTCGTGCGATGACAATCTTGTAGAAGATTTATTGCCACTGGAGCTTCGATTCAGCAATTTGATCAGGATGTGACTCAAGAATACATCCACTAGTATAATAATATTACGAGGCTCTACATCACTCGATCAGGAGCAGCTGTGGGTCATATGGTACGTATTTAAATATTGAATAATTTTTTAAAATTCTTTACTCAATTAATTATTCTCTTATTTTTTTCAATTCACAGAGATCAAACAACAGAAGACTTCATGATGTTGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTAGATGTACCTATTGTGCCTCCACCAGTTAATAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACATAG

mRNA sequence

ATGTCAATCCCGAACATGGTTCATCTATATGTGAATGTGAGCAGGACGAGTTTGGATATAAACTTGAATTCCAAACCATTCGGTCAGTTTGAAGATCGAACTCAGGTTGTTGACCCTAATTCAGAACCAGTTGCATCGTCGATAAACGACGATGAAGAAATGAGATCAAACAACAGAAGACTTCATGATGTTGCAGATGATCCACAACAAGTCCTTGATATATATGTACCTATTGTGCCTCCACCAGTTAATAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACATAG

Coding sequence (CDS)

ATGTCAATCCCGAACATGGTTCATCTATATGTGAATGTGAGCAGGACGAGTTTGGATATAAACTTGAATTCCAAACCATTCGGTCAGTTTGAAGATCGAACTCAGGTTGTTGACCCTAATTCAGAACCAGTTGCATCGTCGATAAACGACGATGAAGAAATGAGATCAAACAACAGAAGACTTCATGATGTTGCAGATGATCCACAACAAGTCCTTGATATATATGTACCTATTGTGCCTCCACCAGTTAATAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACATAG

Protein sequence

MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRLHDVADDPQQVLDIYVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQT
Homology
[Close]
BLAST of PI0003166 vs. ExPASy TrEMBL
Match: A0A5A7V8N5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003910 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 1  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN 59
          M IPNMVHLYVNVSR  LDINLNSKPFGQ EDRTQV+ P+SE VASS+ DDEEM +NN
Sbjct: 1  MPIPNMVHLYVNVSRVGLDINLNSKPFGQLEDRTQVIVPDSELVASSVYDDEEMVANN 58

[Close]
BLAST of PI0003166 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.0e-14
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 2   SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRL 61
           +I  ++  ++ VS    DI++  +    + + T++                 +RSNN RL
Sbjct: 102 TISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG------HLRSNNARL 161

Query: 62  HDVADDPQQVLDIY---------------VPIVPPPVNRGRVRVEEPELDEVYHNVEEVP 112
            DVADDPQQVL+I                + IVPPPV+RGRVRVEE ELDEVYHNVEEVP
Sbjct: 162 RDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVP 220

[Close]
BLAST of PI0003166 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-14
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 0 

Query: 2   SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRL 61
           +I  ++  ++ VS    DI++  +    + + T++    + P A+       +RSNN RL
Sbjct: 93  TISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLY--ITRPGAAV----GHLRSNNARL 152

Query: 62  HDVADDPQQVLDIY---------------VPIVPPPVNRGRVRVEEPELDEVYHNVEEVP 112
            DVADDPQQVL+I                + IVPPPV+RGRVRVEE ELDEVYHNVEEVP
Sbjct: 153 RDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVP 211

[Close]
BLAST of PI0003166 vs. ExPASy TrEMBL
Match: A0A5D3DVS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00230 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 1  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN 59
          M IPNMVHLYVNVSR  LDINLNS+PF Q EDRTQV+ P+SE VASS+ DDEEM +NN
Sbjct: 1  MPIPNMVHLYVNVSRVGLDINLNSEPFCQLEDRTQVIIPDSELVASSVYDDEEMVANN 58

[Close]
BLAST of PI0003166 vs. ExPASy TrEMBL
Match: A0A5A7V2L1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00440 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN 59
          M I NMVHLYVNVSR  LDINLNS+PFGQ EDRTQV+ PN E VASS+ DDEEM +NN
Sbjct: 1  MPISNMVHLYVNVSRVGLDINLNSEPFGQLEDRTQVIVPNFELVASSVYDDEEMVANN 58

[Close]
BLAST of PI0003166 vs. NCBI nr
Match: KAA0062051.1 (hypothetical protein E6C27_scaffold89G003910 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.7e-15
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 1  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN 59
          M IPNMVHLYVNVSR  LDINLNSKPFGQ EDRTQV+ P+SE VASS+ DDEEM +NN
Sbjct: 1  MPIPNMVHLYVNVSRVGLDINLNSKPFGQLEDRTQVIVPDSELVASSVYDDEEMVANN 58

[Close]
BLAST of PI0003166 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 8.3e-14
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 2   SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRL 61
           +I  ++  ++ VS    DI++  +    + + T++                 +RSNN RL
Sbjct: 102 TISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG------HLRSNNARL 161

Query: 62  HDVADDPQQVLDIY---------------VPIVPPPVNRGRVRVEEPELDEVYHNVEEVP 112
            DVADDPQQVL+I                + IVPPPV+RGRVRVEE ELDEVYHNVEEVP
Sbjct: 162 RDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVP 220

[Close]
BLAST of PI0003166 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 0 

Query: 2   SIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNNRRL 61
           +I  ++  ++ VS    DI++  +    + + T++    + P A+       +RSNN RL
Sbjct: 93  TISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLY--ITRPGAAV----GHLRSNNARL 152

Query: 62  HDVADDPQQVLDIY---------------VPIVPPPVNRGRVRVEEPELDEVYHNVEEVP 112
            DVADDPQQVL+I                + IVPPPV+RGRVRVEE ELDEVYHNVEEVP
Sbjct: 153 RDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVP 211

[Close]
BLAST of PI0003166 vs. NCBI nr
Match: KAA0060115.1 (uncharacterized protein E6C27_scaffold39G00340 [Cucumis melo var. makuwa] >TYK08429.1 uncharacterized protein E5676_scaffold654G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN 59
          M I NMVHLYVNVSR  LDINLNS+PFGQ EDRTQV+ PN E VASS+ DDEEM +NN
Sbjct: 1  MPISNMVHLYVNVSRVGLDINLNSEPFGQLEDRTQVIVPNFELVASSVYDDEEMVANN 58

[Close]
BLAST of PI0003166 vs. NCBI nr
Match: KAA0066696.1 (uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa] >TYK27846.1 uncharacterized protein E5676_scaffold384G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 1  MSIPNMVHLYVNVSRTSLDINLNSKPFGQFEDRTQVVDPNSEPVASSINDDEEMRSNN 59
          M IPNMVHLYVNVSR  LDINLNS+PF Q EDRTQV+ P+SE VASS+ DDEEM +NN
Sbjct: 1  MPIPNMVHLYVNVSRVGLDINLNSEPFCQLEDRTQVIIPDSELVASSVYDDEEMVANN 58

The following BLAST results are available for this feature:
BLAST of PI0003166 vs.
Match NameE-valueIdentityDescription
BLAST of PI0003166 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V8N52.8e-1579.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TBF84.0e-1443.20Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH236.9e-1444.80Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DVS69.0e-1475.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2L19.0e-1475.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0003166 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062051.15.7e-1579.31hypothetical protein E6C27_scaffold89G003910 [Cucumis melo var. makuwa][more]
KAA0038951.18.3e-1443.20mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.11.4e-1344.80mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0060115.11.8e-1375.86uncharacterized protein E6C27_scaffold39G00340 [Cucumis melo var. makuwa] >TYK08... [more]
KAA0066696.11.8e-1375.86uncharacterized protein E6C27_scaffold271G00290 [Cucumis melo var. makuwa] >TYK2... [more]
BLAST of PI0003166 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003166.1PI0003166.1mRNA