PI0003110 (gene) Melon (PI 482460) v1

Overview


Name	PI0003110
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit 10-like protein
Location	chr10: 18585473 .. 18586521 (-)
RNA-Seq Expression	PI0003110
Synteny	PI0003110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTAAAATAATAATAATAATTAATTAATTAATTAATTAATTTATGTTGAGGCGAAGTTAGATATAAAATTAGGTTATGAAAAGGGAGCGAAGTAGTGGGAATTAGTTTCCGAATTAGAAGGGTTTTATGAATTTAGGTTTAAAATAGGATACGGAAGTTAATTTAATGAAATTGGAGAAGCAAAGAGATTAAAGAAGATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTATGAATTCCATTTTTCTCTTCAAATATAGTTTTCCTTTTATTGATTTAATTTGATTTCAGGTCATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACCATCCAGAAGGGTAACACTAACACATTCATTATAATAGTTTTTGCTTAATTCTCAATCCACTCGGATTAGTAAGACCAAGATTCCTATAATTTTCTCAAATCTTTATGATATTTTTTTAAATTGTCCAAAATAGTATGAGAATTTTGATTGTGGAAAATCAATAATGCAGGGAGGCATTGGATTTGTTAGGGTTAGTACGGTACTGTTGTAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACAGTATAATATATATATTACTCTCTCTTTCTCTAATTTATTCATTGTATATATATATATATGAATATGTGATTATGATTATTGTAATAATATTTTGCAGCCATGGATAAGTCTGAAATCATCTAAAGCCTAATTACGGGGAATTGCTTTGCCAACACAATGAATTCTGCAATGAACTGTTTGAATTTTTTGAAGTTTTTATTTAGTTTTTGTAGACCTAATAAAGTTGTTGTGTACTTTCACATAGTTGAAATTCTTTAAAGTTTTGGATGGAAATTGAGATGTTGAATTAGTTTACGGTAACCTACAATGAAAATGTTGTTTTAGATGAAGAGTATTTTTTAAACAAATGTTGAAGATGAAGGATATTTGTTATAGTCTAGTTTTAATACCTTTATCGTCTTTTTATGCATGGAATCAAATGGTTGTTTTATTTAAAAA

mRNA sequence

ATTTTTAAAATAATAATAATAATTAATTAATTAATTAATTAATTTATGTTGAGGCGAAGTTAGATATAAAATTAGGTTATGAAAAGGGAGCGAAGTAGTGGGAATTAGTTTCCGAATTAGAAGGGTTTTATGAATTTAGGTTTAAAATAGGATACGGAAGTTAATTTAATGAAATTGGAGAAGCAAAGAGATTAAAGAAGATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTCATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACCATCCAGAAGGGGAGGCATTGGATTTGTTAGGGTTAGTACGGTACTGTTGTAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACAGTATAATATATATATTACTCTCTCTTTCTCTAATTTATTCATTGTATATATATATATATGAATATGTGATTATGATTATTGTAATAATATTTTGCAGCCATGGATAAGTCTGAAATCATCTAAAGCCTAATTACGGGGAATTGCTTTGCCAACACAATGAATTCTGCAATGAACTGTTTGAATTTTTTGAAGTTTTTATTTAGTTTTTGTAGACCTAATAAAGTTGTTGTGTACTTTCACATAGTTGAAATTCTTTAAAGTTTTGGATGGAAATTGAGATGTTGAATTAGTTTACGGTAACCTACAATGAAAATGTTGTTTTAGATGAAGAGTATTTTTTAAACAAATGTTGAAGATGAAGGATATTTGTTATAGTCTAGTTTTAATACCTTTATCGTCTTTTTATGCATGGAATCAAATGGTTGTTTTATTTAAAAA

Coding sequence (CDS)

ATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTCATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACCATCCAGAAGGGGAGGCATTGGATTTGTTAGGGTTAGTACGGTACTGTTGTAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACAGTATAATATATATATTACTCTCTCTTTCTCTAATTTATTCATTGTATATATATATATATGAATATGTGATTATGATTATTGTAATAATATTTTGCAGCCATGGATAA

Protein sequence

MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSIIYILLSLSLIYSLYIYIYEYVIMIIVIIFCSHG

Homology

[Close]

BLAST of PI0003110 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWDTYL+LLQAD+ EG+ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-28
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ D+ EG+ALD L LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTL 65

[Close]

BLAST of PI0003110 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-28
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ D+ EG+ALD L LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTL 65

[Close]

BLAST of PI0003110 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-25
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YL LLQ D+ EG+ALD L L RYCCRRML+THVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60

Query: 61 NYNSI 66
          NY  +
Sbjct: 61 NYTPL 65

[Close]

BLAST of PI0003110 vs. ExPASy Swiss-Prot
Match: O13877 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpb10 PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-25
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIP+RCF+CGKVIG+KWDTYL LLQ D+ EGEALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1  MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60

Query: 61 NYNSI 66
           YN +
Sbjct: 61 CYNPL 65

[Close]

BLAST of PI0003110 vs. ExPASy TrEMBL
Match: A0A0A0KQ80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600940 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-29
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD+LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. ExPASy TrEMBL
Match: A0A5A7SYN0 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003050 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. ExPASy TrEMBL
Match: A0A1S3BEG8 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo OX=3656 GN=LOC103488997 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. ExPASy TrEMBL
Match: D8QXA0 (Uncharacterized protein OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_127452 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PE EALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPESEALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNS 65
          NYNS
Sbjct: 61 NYNS 64

[Close]

BLAST of PI0003110 vs. ExPASy TrEMBL
Match: A0A2P6QFB0 (Putative DNA-directed RNA polymerase transcription regulator Homeodomain-LIKE family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0051151 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEG+ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTL 65

[Close]

BLAST of PI0003110 vs. NCBI nr
Match: XP_004135479.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus] >KGN51793.1 hypothetical protein Csa_009052 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD+LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. NCBI nr
Match: XP_008446194.1 (PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo] >KAA0034305.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEGEALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. NCBI nr
Match: XP_038893151.1 (DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-28
Identity = 60/65 (92.31%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYL+LLQAD+PEGEALD+LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. NCBI nr
Match: XP_027347186.1 (DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius])

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+PEG+ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTL 65

[Close]

BLAST of PI0003110 vs. NCBI nr
Match: GFP81349.1 (DNA-directed RNA polymerase subunit 10-like protein [Phtheirospermum japonicum])

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQAD+ EG+ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSIIYILLSLSL 75
          NYNS +++ LSLS+
Sbjct: 61 NYNS-LFLFLSLSI 73

[Close]

BLAST of PI0003110 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-30
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWDTYL+LLQAD+ EG+ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTM 65

[Close]

BLAST of PI0003110 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 124.4 bits (311), Expect = 5.0e-29
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADHPEGEALDLLGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ D+ EG+ALD L LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNSI 66
          NYN++
Sbjct: 61 NYNTL 65

The following BLAST results are available for this feature:

BLAST of PI0003110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	2.2e-29	87.69	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q39290	3.2e-28	86.15	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q8LFJ6	7.1e-28	86.15	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q55AB6	3.3e-25	80.00	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
O13877	4.3e-25	78.46	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Schizosaccharomyce...	[more]

BLAST of PI0003110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ80	5.1e-29	93.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600940 PE=3 SV=1	[more]
A0A5A7SYN0	1.1e-28	93.85	DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo var. makuwa ...	[more]
A0A1S3BEG8	1.1e-28	93.85	DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo OX=3656 GN=L...	[more]
D8QXA0	1.9e-28	95.31	Uncharacterized protein OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_127...	[more]
A0A2P6QFB0	1.9e-28	92.31	Putative DNA-directed RNA polymerase transcription regulator Homeodomain-LIKE fa...	[more]

BLAST of PI0003110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135479.1	1.1e-28	93.85	DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus] >KGN51793....	[more]
XP_008446194.1	2.3e-28	93.85	PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo] >K...	[more]
XP_038893151.1	3.1e-28	92.31	DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]	[more]
XP_027347186.1	4.0e-28	92.31	DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius]	[more]
GFP81349.1	4.0e-28	86.49	DNA-directed RNA polymerase subunit 10-like protein [Phtheirospermum japonicum]	[more]

BLAST of PI0003110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	1.6e-30	87.69	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	5.0e-29	86.15	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 1..59 e-value: 7.6E-30 score: 103.0
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 1..65
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 1..63 score: 19.642227
None	No IPR available	GENE3D	1.10.10.60		coord: 1..65 e-value: 3.1E-37 score: 128.5
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 1..65
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 2..11
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003110.2	PI0003110.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding