PI0003027 (gene) Melon (PI 482460) v1

Overview


Name	PI0003027
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CLAVATA3/ESR-RELATED
Location	chr02: 23683400 .. 23683887 (-)
RNA-Seq Expression	PI0003027
Synteny	PI0003027

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTGAGTACAAACACAAAACACAAAACCCAAAACCAAAAAACACAAAAATGGGTTTCTTGTTTAACAGGAAAGGTTTGAGCTTTGTGTTTTTTGTAGCTTGTTTTTTGTTGTGTCTTCTTCAACAACCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTAGCTTTCAAATCCACAATTATCAACACCCACAAAGCTGATTCAGTGAAAAAATTGAATTTAGCAGCTCCATCACCAGCCATGAATTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAACAAAGGAAAGCTCAAGAGATGAAGAAAAACTCTCATTTCATTTGGTACTTTTCATTAGTTTCTTCAAAAAGGGGTTGGTTCAATATTGGAAATTTCCCATATATATATTATATATATAATTTTCTATCTTGGGTTTGTTTAAAATTTAAAT

mRNA sequence

TTTTGTTGAGTACAAACACAAAACACAAAACCCAAAACCAAAAAACACAAAAATGGGTTTCTTGTTTAACAGGAAAGGTTTGAGCTTTGTGTTTTTTGTAGCTTGTTTTTTGTTGTGTCTTCTTCAACAACCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTAGCTTTCAAATCCACAATTATCAACACCCACAAAGCTGATTCAGTGAAAAAATTGAATTTAGCAGCTCCATCACCAGCCATGAATTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAACAAAGGAAAGCTCAAGAGATGAAGAAAAACTCTCATTTCATTTGGTACTTTTCATTAGTTTCTTCAAAAAGGGGTTGGTTCAATATTGGAAATTTCCCATATATATATTATATATATAATTTTCTATCTTGGGTTTGTTTAAAATTTAAAT

Coding sequence (CDS)

ATGGGTTTCTTGTTTAACAGGAAAGGTTTGAGCTTTGTGTTTTTTGTAGCTTGTTTTTTGTTGTGTCTTCTTCAACAACCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTAGCTTTCAAATCCACAATTATCAACACCCACAAAGCTGATTCAGTGAAAAAATTGAATTTAGCAGCTCCATCACCAGCCATGAATTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Protein sequence

MGFLFNRKGLSFVFFVACFLLCLLQQPQTTANGLSTIDVALKWVAFKSTIINTHKADSVKKLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS

Homology

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BLAST of PI0003027 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MGFLFNRKGLSFVFFVACFLLCLL-QQPQTTANGLSTIDVALKWVAFKST-IINTHKADS 60
          MG LF+RKGL FVF VACFLLC+L QQPQTTANGLSTID ALKWVAFKST  INTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 --VKKLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 95
             K LNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]

BLAST of PI0003027 vs. ExPASy TrEMBL
Match: A0A445ABG3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 14 FFVACFLLCLLQQPQTTANGLSTIDVALKWVAFKSTIINTHKADSVKKLNLAAPSPAMNF 73
          F + C +  L  QP    +GL + D+ALKW   +S I+     + ++     AP+P+M F
Sbjct: 10 FILVCVIGVLASQP-CMVSGLRSQDLALKWDKGRSRILKAVTVEDLQSKLDVAPAPSMTF 69

Query: 74 DPNQSNKRGVKKGSDPIHNRS 95
          DPNQSNKR VKKGSDPIHNRS
Sbjct: 70 DPNQSNKRTVKKGSDPIHNRS 89

[Close]

BLAST of PI0003027 vs. ExPASy TrEMBL
Match: A0A1R3KCL9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1  MGFLFNRKGLSFVFFVACFLLCLLQQPQTTANGLSTIDVALKWVAFKSTIINTHK----- 60
          MGF  NR    F+  +AC  L +LQ      +GL +ID+AL+W       +   +     
Sbjct: 1  MGFSVNR---GFLLLLACISLLVLQPEM--VSGLRSIDLALRWDKGLLPFVRNSRFLKAD 60

Query: 61 --ADSVKKLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 94
             DS++     APSP+M FDPNQS+KR V+KGSDPIHNR
Sbjct: 61 AAVDSLQTRPSLAPSPSMMFDPNQSDKRRVRKGSDPIHNR 95

[Close]

BLAST of PI0003027 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1  MGFLFNRKGLSFVFFVACFLLCLLQQPQTTANGLSTIDVALKW-VAFKSTIINTHKADSV 60
          MGFL  R   S V FV    L L  QP+   +GL ++D+AL+W     S + + H  ++V
Sbjct: 1  MGFLAYR---SAVLFVCIGFLAL--QPE-KVSGLRSMDLALRWDKGHMSFLKSLHLVEAV 60

Query: 61 ------KKLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 95
                 KL+L AP+P+M FDPNQSNKR V+KGSDPIHNRS
Sbjct: 61 AVEDLQAKLSL-APAPSMTFDPNQSNKRKVRKGSDPIHNRS 94

[Close]

BLAST of PI0003027 vs. ExPASy TrEMBL
Match: A0A2C9VP68 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G092300 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 1  MGFLFNRKGLSFVFFVACFLLCLLQQPQTTANGLSTIDVALKW------VAFKSTIINTH 60
          MGFL +R G+  + F+    L    QPQ  ++ LS++D+AL+W       A  S ++ + 
Sbjct: 1  MGFLVHR-GILLLLFIGYLAL----QPQKVSS-LSSLDLALRWKQGLLPFARNSRMLRSV 60

Query: 61 KADSVKKLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 94
               + L  +AP+P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 61 ALRDFQTLASSAPAPSMVFDPNQSNKRTVRKGSDPIHNR 93

[Close]

BLAST of PI0003027 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1  MGFLFNRKGLSFVFFVACFLLCLL-QQPQTTANGLSTIDVALKWVAFKST-IINTHKADS 60
          MG LF+RKGL FVF VACFLLC+L QQPQTTANGLSTID ALKWVAFKST  INTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 --VKKLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 95
             K LNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]

BLAST of PI0003027 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 5.7e-24
Identity = 72/98 (73.47%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 1  MGFLFNRKGLSFVFFVACFLLCLLQQPQTTANGLSTIDVALKWVAFKSTIINTHKA-DSV 60
          MGFLF RK L F+F +A F+  LL QPQ TA+GL+TIDVALKWVAFKS  I+THKA DS 
Sbjct: 1  MGFLFCRKVLFFLFLLAGFVFSLL-QPQ-TASGLATIDVALKWVAFKSPAIHTHKADDSE 60

Query: 61 KKLNL----AAPSPAMNFDPNQSNKRGVKKGSDPIHNR 94
          KKLN+     APSPAMNFDPNQSNKR VKKGSDPIHNR
Sbjct: 61 KKLNMKNMNVAPSPAMNFDPNQSNKRRVKKGSDPIHNR 96

[Close]

BLAST of PI0003027 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 2.7e-21
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 4  LFNRKGLSFVFFVACFLLCLLQQPQTTANGLSTIDVALKWVAFKSTIINTHKADSVKKLN 63
          + + K L F   +A   LC+  QPQ TA+GL+TID+ALKWVAFKS I NTH  DSVKKL 
Sbjct: 1  MLSTKALVFALLLAGVSLCV--QPQ-TASGLTTIDLALKWVAFKSPITNTHNPDSVKKLK 60

Query: 64 L----AAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 95
          +     APSPAM+FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 MKNMSLAPSPAMHFDPNQSNKRGVKKGSDPIHNRS 92

[Close]

BLAST of PI0003027 vs. NCBI nr
Match: QHN98326.1 (uncharacterized protein DS421_13g388610 [Arachis hypogaea] >RYR23675.1 hypothetical protein Ahy_B03g068868 [Arachis hypogaea] >RYR45089.1 hypothetical protein Ahy_A08g041332 [Arachis hypogaea])

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-09
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 14 FFVACFLLCLLQQPQTTANGLSTIDVALKWVAFKSTIINTHKADSVKKLNLAAPSPAMNF 73
          F + C +  L  QP    +GL + D+ALKW   +S I+     + ++     AP+P+M F
Sbjct: 10 FILVCVIGVLASQP-CMVSGLRSQDLALKWDKGRSRILKAVTVEDLQSKLDVAPAPSMTF 69

Query: 74 DPNQSNKRGVKKGSDPIHNRS 95
          DPNQSNKR VKKGSDPIHNRS
Sbjct: 70 DPNQSNKRTVKKGSDPIHNRS 89

[Close]

BLAST of PI0003027 vs. NCBI nr
Match: OMP04794.1 (hypothetical protein COLO4_09292 [Corchorus olitorius])

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-08
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1  MGFLFNRKGLSFVFFVACFLLCLLQQPQTTANGLSTIDVALKWVAFKSTIINTHK----- 60
          MGF  NR    F+  +AC  L +LQ      +GL +ID+AL+W       +   +     
Sbjct: 1  MGFSVNR---GFLLLLACISLLVLQPEM--VSGLRSIDLALRWDKGLLPFVRNSRFLKAD 60

Query: 61 --ADSVKKLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 94
             DS++     APSP+M FDPNQS+KR V+KGSDPIHNR
Sbjct: 61 AAVDSLQTRPSLAPSPSMMFDPNQSDKRRVRKGSDPIHNR 95

The following BLAST results are available for this feature:

BLAST of PI0003027 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003027 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD5	1.3e-34	86.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1	[more]
A0A445ABG3	3.3e-09	48.15	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1	[more]
A0A1R3KCL9	4.8e-08	43.00	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1	[more]
A0A314YU30	1.4e-07	48.51	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164...	[more]
A0A2C9VP68	1.4e-07	43.43	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G092300 PE=4 SV=...	[more]

BLAST of PI0003027 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63668.1	2.7e-34	86.73	hypothetical protein Csa_014085 [Cucumis sativus]	[more]
KAG6589506.1	5.7e-24	73.47	hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6587538.1	2.7e-21	66.32	hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
QHN98326.1	6.8e-09	48.15	uncharacterized protein DS421_13g388610 [Arachis hypogaea] >RYR23675.1 hypotheti...	[more]
OMP04794.1	9.8e-08	43.00	hypothetical protein COLO4_09292 [Corchorus olitorius]	[more]

BLAST of PI0003027 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 13..94
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 13..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003027.1	PI0003027.1	mRNA