PI0003008 (gene) Melon (PI 482460) v1

Overview
NamePI0003008
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionFormamidopyrimidine-DNA glycosylase
Locationchr05: 3604814 .. 3606441 (+)
RNA-Seq ExpressionPI0003008
SyntenyPI0003008
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGCAAAGCGGACCCAAAAGGCTTGGGGGTTTCATAGCTTCGTAGCGTTGCTTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGCTCACTCTCAAGGTAAATTCTGCTTCTCGACGCCTTTCTTTTTATTGCATTTGTAGTTGCTGCGGAATCTGCTAGAATATCTACTCGATTATTGCATAATGTTCAACGTAATCGGGAGAGATATCTCCATTTGAGATAGCTTGTTTATGTTTGCTGTAATTTACCTCCCTGAATTTTCTTCTACCTTTTGGAAGACGATTGCATTGTTTTTTCTTTTTTTCTTTTTTTTGGTATATATGCTTTCCGGTGAAACGTTTGGGCTTGGGGAACTATTCTGAGACTTGTTATTTGGTTGGACATTTTTCTATGGATGCTTGGGAAGTATTCGGTGATTATTTGAGCTAAAATGGATTAAGACGGTGAATAGTTCGTTATTCTAAAGAGAATATCGTCAGAAAATTAAGTTTATTAGATTATATAAGGCTTATTAAGGATGTTATTCTAATTTTGTTGTAATGATGGATTAGCGAGCAAATTTGTTATGGTTCATACGTAGTTCCATTTCTAACTGTAAATTTTTATGCAGCATCATCAAAAGGTTAGTTCAGATGCTAAAATCATTGCCTGAAGCTCAATCGTTAGTCCTGGTTAAAGAAATATGAGTTGTTTATTTCTCTAGATTTTAAGGTTTTGATTGCACACTGACTTGTTTTCGATGCGTCAGGAAATCCCACCACGGAAACTGGCTAAAGCTACAGTAGTTTCAAGCCGAGTTGGAACAGGTTTAATTCTCATTTTCTGTCTAGTCAATTATTACTGGGATCACCACCATTCTGAGGCATTTTAACTTGAAAATTTTCTAGTTATATCTTATGTTCAAAATATCTGACTTACTAAGAGTATGAACATCTATTAGTCCGTGGGTCTACTTATTACAAAAGACAAACATCCCTATTCCAAATCATACACATAAGTCCTTAGGGAAAAAAATAGTCTATATTACTTTACAATATATAGGCTCCAGTTCCACTAATTACATTGATTGAAATAAAATAGAAAACCACTAAAATTGATCAAAACTAGAAAAGTTAATAATTGAATGAATGAAGCATTATACCATTACTCATGTAATGTAATTCTGTACCCACCATATACTATCTTGATTAGATTGAGTAAATTTTGGATTGCTGATGATATGAATTGCATTTGCAGCTTCGAAGCTTGTGCTATCCTGTTATTCAAAGAAATCCATATCTATGAATTGGGAAAACTTTCAATCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGTAATATGGTATTATTAACTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATCGATCGGATTACTTAACTATTCAGACTTTAAATTCCATTTTATGATTTGTTTCTGCTTACTGTGCCTGATCTTAGTTGAATCATCATTGTATCCATTAGTCAATAGTCACTTGTTTTCATCAAAATGTCTGAAACTACCTCCTGTTTGTGAAAATTTTATCTTGTTTGATCTGGGAAGATAGGTAA

mRNA sequence

AAAAGGCAAAGCGGACCCAAAAGGCTTGGGGGTTTCATAGCTTCGTAGCGTTGCTTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGCTCACTCTCAAGCATCATCAAAAGGAAATCCCACCACGGAAACTGGCTAAAGCTACAGTAGTTTCAAGCCGAGTTGGAACAGCTTCGAAGCTTGTGCTATCCTGTTATTCAAAGAAATCCATATCTATGAATTGGGAAAACTTTCAATCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGTAATATGGTATTATTAACTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATCGATCGGATTACTTAACTATTCAGACTTTAAATTCCATTTTATGATTTGTTTCTGCTTACTGTGCCTGATCTTAGTTGAATCATCATTGTATCCATTAGTCAATAGTCACTTGTTTTCATCAAAATGTCTGAAACTACCTCCTGTTTGTGAAAATTTTATCTTGTTTGATCTGGGAAGATAGGTAA

Coding sequence (CDS)

ATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGCTCACTCTCAAGCATCATCAAAAGGAAATCCCACCACGGAAACTGGCTAAAGCTACAGTAGTTTCAAGCCGAGTTGGAACAGCTTCGAAGCTTGTGCTATCCTGTTATTCAAAGAAATCCATATCTATGAATTGGGAAAACTTTCAATCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGTAATATGGTATTATTAACTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATCGATCGGATTACTTAA

Protein sequence

MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWENFQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Homology
[Close]
BLAST of PI0003008 vs. ExPASy TrEMBL
Match: A0A5A7U1B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00850 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.1e-46
Identity = 99/109 (90.83%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQLTL    KEIPP KLAKATVVS R GTASKLVL CYSKKSISMNWEN
Sbjct: 1   MASFVSLSFSVPQLTL----KEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
           F+SVRLTSRPFWGIVSSSS NMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of PI0003008 vs. ExPASy TrEMBL
Match: A0A5D3CPK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00650 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.5e-45
Identity = 98/109 (89.91%), Postives = 99/109 (90.83%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQLTL    KEIPP KLAKATVVS R GTA KLVL CYSKKSISMNWEN
Sbjct: 1   MASFVSLSFSVPQLTL----KEIPPWKLAKATVVSRRAGTALKLVLPCYSKKSISMNWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
           F+SVRLTSRPFWGIVSSSS NMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of PI0003008 vs. ExPASy TrEMBL
Match: A0A0A0LJQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.5e-45
Identity = 98/109 (89.91%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQLTL    KEIPPRKLAKAT+VS R GTASKLVL  YSKKSIS+NWEN
Sbjct: 1   MASFVSLSFSVPQLTL----KEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
           FQSVRLTSRPFWGIVSSSS NMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FQSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of PI0003008 vs. ExPASy TrEMBL
Match: A0A6J1K9Q0 (uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 85/109 (77.98%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQ+      KE+PP KLAK TVV  R GTASK VLSC S KSISMNWEN
Sbjct: 1   MASFVSLSFSVPQVIF----KEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
            Q VRLTSRPFWGIVSSSS N+V L GYWVGPDVDDGWGYIEA +DRIT
Sbjct: 61  CQPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEALVDRIT 104

[Close]
BLAST of PI0003008 vs. ExPASy TrEMBL
Match: A0A6J1G3X3 (uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC111450562 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 83/109 (76.15%), Postives = 88/109 (80.73%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQ+      KE+PP KLAK TVV  R GTASK VLSC + KSIS NWEN
Sbjct: 1   MASFVSLSFSVPQVIF----KEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
              VRLTSRPFWGIVSSSS N+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  CHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAFVDRIT 103

[Close]
BLAST of PI0003008 vs. NCBI nr
Match: KAA0048017.1 (hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-45
Identity = 99/109 (90.83%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQLTL    KEIPP KLAKATVVS R GTASKLVL CYSKKSISMNWEN
Sbjct: 1   MASFVSLSFSVPQLTL----KEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
           F+SVRLTSRPFWGIVSSSS NMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of PI0003008 vs. NCBI nr
Match: TYK13803.1 (hypothetical protein E5676_scaffold488G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 5.2e-45
Identity = 98/109 (89.91%), Postives = 99/109 (90.83%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQLTL    KEIPP KLAKATVVS R GTA KLVL CYSKKSISMNWEN
Sbjct: 1   MASFVSLSFSVPQLTL----KEIPPWKLAKATVVSRRAGTALKLVLPCYSKKSISMNWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
           F+SVRLTSRPFWGIVSSSS NMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of PI0003008 vs. NCBI nr
Match: KGN60942.1 (hypothetical protein Csa_021351 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 5.2e-45
Identity = 98/109 (89.91%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQLTL    KEIPPRKLAKAT+VS R GTASKLVL  YSKKSIS+NWEN
Sbjct: 1   MASFVSLSFSVPQLTL----KEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
           FQSVRLTSRPFWGIVSSSS NMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  FQSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of PI0003008 vs. NCBI nr
Match: XP_038890542.1 (uncharacterized protein LOC120080060 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 9.6e-39
Identity = 88/109 (80.73%), Postives = 93/109 (85.32%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MA+FVSLSFSVPQ TL    KEIPPRKL++ TVVSSR GTASKLVLSC S  SISMNW+N
Sbjct: 1   MATFVSLSFSVPQPTL----KEIPPRKLSEVTVVSSRAGTASKLVLSCCSNISISMNWKN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
              VRLT RPFWGIVSSSS  MVLL+GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  CHPVRLTPRPFWGIVSSSSRAMVLLSGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of PI0003008 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 3.4e-36
Identity = 85/109 (77.98%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQLTLKHHQKEIPPRKLAKATVVSSRVGTASKLVLSCYSKKSISMNWEN 60
           MASFVSLSFSVPQ+      KE+PP KLAK TVV  R GTASK VLSC S KSISMNWEN
Sbjct: 1   MASFVSLSFSVPQVIF----KEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWEN 60

Query: 61  FQSVRLTSRPFWGIVSSSSSNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 110
            Q VRLTSRPFWGIVSSSS N+V L GYWVGPDVDDGWGYIEA +DRIT
Sbjct: 61  CQPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEALVDRIT 104

The following BLAST results are available for this feature:
BLAST of PI0003008 vs.
Match NameE-valueIdentityDescription
BLAST of PI0003008 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1B85.1e-4690.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CPK72.5e-4589.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJQ72.5e-4589.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1[more]
A0A6J1K9Q01.6e-3677.98uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548... [more]
A0A6J1G3X31.2e-3476.15uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
BLAST of PI0003008 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048017.11.1e-4590.83hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa][more]
TYK13803.15.2e-4589.91hypothetical protein E5676_scaffold488G00650 [Cucumis melo var. makuwa][more]
KGN60942.15.2e-4589.91hypothetical protein Csa_021351 [Cucumis sativus][more]
XP_038890542.19.6e-3980.73uncharacterized protein LOC120080060 [Benincasa hispida][more]
XP_022999037.13.4e-3677.98uncharacterized protein LOC111493548 [Cucurbita maxima][more]
BLAST of PI0003008 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003008.4PI0003008.4mRNA