PI0002987 (gene) Melon (PI 482460) v1

Overview


Name	PI0002987
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 4064401 .. 4065015 (-)
RNA-Seq Expression	PI0002987
Synteny	PI0002987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGTTCCACAGAGCTCTATATAATAAAGCAAACCAAAAATCAAAGCTTCACAAACCAAACCCAGCAATTAAAAAAATAACAAAGAGCAAAAAAAAATCTCGCTCTTTTTCTTGAGTTTTAATTTTTCTTTTCCTTCCAAAATTATGGGATTTCTTAGAGAAAGAGAAATCAGGGGTTCTCGTGGTGACCTGGCGAAAATTGGGAGAGAGGGATTTGAAATAATTGATGAATACTTTGGTCGAGCGTCGACGGGGGCGAGACGGGTGGCTGCGACGGCAAGGCCAGCTTTGCCGCAACCACCACGTAAGGCGGAGCAACCTCCAAGGATAAGGAAGGAAAAACAGGTGGCTGCTGTGACCTCCGATCAAGTGGCTAAAAACGGTGGCGGAATCGTGATAACAACTTGGCGTGCGTATGCAAAATGAATTAGCTTTGTTCAACCTCTAGAACTAGAACTTGTTGGTGGTCATAATATATAGATATATATATAGGTATGGGTACTTAACTGCAAAATATATATATATATGTAAAGTATAGCTCTAGTTGCTTTCTTGCTTTGCTATGTAGTATATCAATATGTTAATGAAATATATTTGATCTACTACTTATGAAA

mRNA sequence

TTTAGTTCCACAGAGCTCTATATAATAAAGCAAACCAAAAATCAAAGCTTCACAAACCAAACCCAGCAATTAAAAAAATAACAAAGAGCAAAAAAAAATCTCGCTCTTTTTCTTGAGTTTTAATTTTTCTTTTCCTTCCAAAATTATGGGATTTCTTAGAGAAAGAGAAATCAGGGGTTCTCGTGGTGACCTGGCGAAAATTGGGAGAGAGGGATTTGAAATAATTGATGAATACTTTGGTCGAGCGTCGACGGGGGCGAGACGGGTGGCTGCGACGGCAAGGCCAGCTTTGCCGCAACCACCACGTAAGGCGGAGCAACCTCCAAGGATAAGGAAGGAAAAACAGGTGGCTGCTGTGACCTCCGATCAAGTGGCTAAAAACGGTGGCGGAATCGTGATAACAACTTGGCGTGCGTATGCAAAATGAATTAGCTTTGTTCAACCTCTAGAACTAGAACTTGTTGGTGGTCATAATATATAGATATATATATAGGTATGGGTACTTAACTGCAAAATATATATATATATGTAAAGTATAGCTCTAGTTGCTTTCTTGCTTTGCTATGTAGTATATCAATATGTTAATGAAATATATTTGATCTACTACTTATGAAA

Coding sequence (CDS)

ATGGGATTTCTTAGAGAAAGAGAAATCAGGGGTTCTCGTGGTGACCTGGCGAAAATTGGGAGAGAGGGATTTGAAATAATTGATGAATACTTTGGTCGAGCGTCGACGGGGGCGAGACGGGTGGCTGCGACGGCAAGGCCAGCTTTGCCGCAACCACCACGTAAGGCGGAGCAACCTCCAAGGATAAGGAAGGAAAAACAGGTGGCTGCTGTGACCTCCGATCAAGTGGCTAAAAACGGTGGCGGAATCGTGATAACAACTTGGCGTGCGTATGCAAAATGA

Protein sequence

MGFLREREIRGSRGDLAKIGREGFEIIDEYFGRASTGARRVAATARPALPQPPRKAEQPPRIRKEKQVAAVTSDQVAKNGGGIVITTWRAYAK

Homology

[Close]

BLAST of PI0002987 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MGFLREREIRGSRGDLAKIGREGFEIIDEYFGRA-STGARRVAA-TARPALPQPPRKAEQ 60
          MGFLREREIRGSRGDLAKIGREGF+IIDEYFGRA STGARRVAA TARPALPQPPRKAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRIRKEKQVAAVTSDQVAKNGGGIVITTWRAYAK 94
          PPRIRKEK VAAVTSDQVAK+GGG VITTWR YAK
Sbjct: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of PI0002987 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.9e-19
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 5  REREIRGSRGDLAKIGREGFEIIDEYFGRAS-TGARRVAATA--RPALPQPPRK-AEQPP 64
          REREI  +  +LA+IG EGF++ID++FGRAS TG RRV A    RPA  QPPRK AEQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 65 RIRKEKQVAAVTSDQVAKNGGGIVITTWRAYAK 94
             KEKQ A VTSD +AK  GGIVITTWR+YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

[Close]

BLAST of PI0002987 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MGFLREREIRGSRGDLAKIGREGFEIIDEYFGRA-STGARRVAA-TARPALPQPPRKAEQ 60
          MGFLREREIRGSRGDLAKIGREGF+IIDEYFGRA STGARRVAA TARPALPQPPRKAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRIRKEKQVAAVTSDQVAKNGGGIVITTWRAYAK 94
          PPRIRKEK VAAVTSDQVAK+GGG VITTWR YAK
Sbjct: 61 PPRIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]

BLAST of PI0002987 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 5  REREIRGSRGDLAKIGREGFEIIDEYFGRAS-TGARRVAATA--RPALPQPPRK-AEQPP 64
          REREI  +  +LA+IG EGF++ID++FGRAS TG RRV A    RPA  QPPRK AEQPP
Sbjct: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 65 RIRKEKQVAAVTSDQVAKNGGGIVITTWRAYAK 94
             KEKQ A VTSD +AK  GGIVITTWR+YAK
Sbjct: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 96

[Close]

BLAST of PI0002987 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 13 RGDLAKIGREGFEIIDEYFGRASTGARRVA-ATARPALPQPPRKAEQPPRIRKEKQVAAV 72
          RGDLAKIGREGF++IDEYFGRA    R  A A ARPALPQ P KAEQPPR ++EK   AV
Sbjct: 4  RGDLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPPRKKREKMPVAV 63

Query: 73 TSDQVAKNGGGIVITTWRA 91
            +QVAK  GGIVITTWRA
Sbjct: 64 NCNQVAKARGGIVITTWRA 82

[Close]

BLAST of PI0002987 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 13 RGDLAKIGREGFEIIDEYFGRASTGARRVAATARPALPQPPRKAEQPPRIRKEKQVAAVT 72
          R DLAKIGREGFE+IDEYFGR    A R  A ARPALPQ P KAEQPPR  +EK    V 
Sbjct: 4  RADLAKIGREGFELIDEYFGRVP--ATRRPAVARPALPQAPCKAEQPPRKMREKLPVPVN 63

Query: 73 SDQVAKNGGGIVITTWRA 91
           +QVA+  GG+VITTWRA
Sbjct: 64 CNQVARARGGVVITTWRA 79

[Close]

BLAST of PI0002987 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 13 RGDLAKIGREGFEIIDEYFGRASTGARRVAATA-RPALPQPPRKAEQPPRIRKEKQVAAV 72
          R DLAKIGREGFE+IDEYFGR     R  AA A RPALPQ P KAEQPPR  +EK    V
Sbjct: 4  RADLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPPRKMREKLPVPV 63

Query: 73 TSDQ 76
            +Q
Sbjct: 64 NCNQ 67

The following BLAST results are available for this feature:

BLAST of PI0002987 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG95	1.7e-37	92.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1	[more]
A0A0A0KI19	5.9e-19	65.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1	[more]

BLAST of PI0002987 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47422.1	3.4e-37	92.63	hypothetical protein Csa_021740 [Cucumis sativus]	[more]
KGN47421.1	1.2e-18	65.59	hypothetical protein Csa_021737 [Cucumis sativus]	[more]
KAG6575081.1	1.2e-18	70.89	hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575082.1	5.7e-16	66.67	hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023548315.1	1.8e-09	64.06	multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p...	[more]

BLAST of PI0002987 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002987.1	PI0002987.1	mRNA