PI0002986 (gene) Melon (PI 482460) v1

Overview


Name	PI0002986
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr01: 13345196 .. 13345609 (-)
RNA-Seq Expression	PI0002986
Synteny	PI0002986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGAGGAAGAGGTAGAAGTAGAAGTGGAAGTAGGAGTAGAACGCGAGAGTCTACAGAGCCAACCATGAATAATTCAGAAGCACATTCCATTAATCCAGATGCAAGGCGAGTTATGGAAGAAGAGTTATATGATCAAGTGGCTCAACAAATGATTAATGGTTTAGCGAGAGACCCAGAGAAAAAGTTTGGAATTGAATGTCTTAAAGTGTTGGGAGCACAAGAGTTTACTGGAACTATAGAACCTGAGGAAGCGGAGAATTGGATTAGAACGCTTAAGAAGTGTTTTCGTGTTATGCAGTGTCCAGAAGATAGGAGAGTGGACTTAGCTATTTTCTTGTTGCAAAGGGGTGTTGAAAATTGGTGGACATTAGAGGAAGGTAGACGGAGAGGTCAGTTGGTTGGAGTTTAA

mRNA sequence

ATGCCAAGAGGAAGAGGTAGAAGTAGAAGTGGAAGTAGGAGTAGAACGCGAGAGTCTACAGAGCCAACCATGAATAATTCAGAAGCACATTCCATTAATCCAGATGCAAGGCGAGTTATGGAAGAAGAGTTATATGATCAAGTGGCTCAACAAATGATTAATGGTTTAGCGAGAGACCCAGAGAAAAAGTTTGGAATTGAATGTCTTAAAGTGTTGGGAGCACAAGAGTTTACTGGAACTATAGAACCTGAGGAAGCGGAGAATTGGATTAGAACGCTTAAGAAGTGTTTTCGTGTTATGCAGTGTCCAGAAGATAGGAGAGTGGACTTAGCTATTTTCTTGTTGCAAAGGGGTGTTGAAAATTGGTGGACATTAGAGGAAGGTAGACGGAGAGGTCAGTTGGTTGGAGTTTAA

Coding sequence (CDS)

ATGCCAAGAGGAAGAGGTAGAAGTAGAAGTGGAAGTAGGAGTAGAACGCGAGAGTCTACAGAGCCAACCATGAATAATTCAGAAGCACATTCCATTAATCCAGATGCAAGGCGAGTTATGGAAGAAGAGTTATATGATCAAGTGGCTCAACAAATGATTAATGGTTTAGCGAGAGACCCAGAGAAAAAGTTTGGAATTGAATGTCTTAAAGTGTTGGGAGCACAAGAGTTTACTGGAACTATAGAACCTGAGGAAGCGGAGAATTGGATTAGAACGCTTAAGAAGTGTTTTCGTGTTATGCAGTGTCCAGAAGATAGGAGAGTGGACTTAGCTATTTTCTTGTTGCAAAGGGGTGTTGAAAATTGGTGGACATTAGAGGAAGGTAGACGGAGAGGTCAGTTGGTTGGAGTTTAA

Protein sequence

MPRGRGRSRSGSRSRTRESTEPTMNNSEAHSINPDARRVMEEELYDQVAQQMINGLARDPEKKFGIECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLLQRGVENWWTLEEGRRRGQLVGV

Homology

[Close]

BLAST of PI0002986 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.8e-31
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 21  EPTMNNSEAHSINPDARRVMEEELYDQVAQQMINGLARDPEKKFGIECLKVLGAQEFTGT 80
           EPT+ +SEAH++NP+ARR  EE LYD+ AQ++IN LA+  +K FGIE +K LGA EF G 
Sbjct: 2   EPTI-DSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 61

Query: 81  IEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLLQRGVENWWTLEEGRR 131
              EEAE WIRTL+KCFRVMQCP++RRV+LA+FLL    E+WW LEE RR
Sbjct: 62  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRR 110

[Close]

BLAST of PI0002986 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 67/140 (47.86%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 1   MPRGRGRSRSGSRSRTRESTEPTMNN--SEAHSINPDARRVMEEELYDQVAQQMINGL-- 60
           MPRGR R    +++ +  + E  M +  S+A S  P     MEE+L D++AQ++I+G+  
Sbjct: 20  MPRGRPRKHPDAKT-SNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 79

Query: 61  -ARDPEKKFGIECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLL 120
              DPEKK+GIE LK LGA  F GT  P +AE W+  ++KCFRV +CPEDR+V+LA FLL
Sbjct: 80  AQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFLL 139

Query: 121 QRG----VENWWTLEEGRRR 132
           Q G     E+WW +EE RRR
Sbjct: 140 QNGGGAKGEDWWRMEESRRR 158

[Close]

BLAST of PI0002986 vs. ExPASy TrEMBL
Match: A0A5D3CSN0 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00330 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.0e-24
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 7   RSRSGSRSRTRESTEPTMNNSEAHSINPDARRVMEEELYDQVAQQMINGLARDPEKKFGI 66
           R+R GS    R++TEPT+ + E H +N D RR  EE +YD+VAQ +I+ + +  EKKFGI
Sbjct: 5   RARVGS----RKTTEPTI-DLEVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGI 64

Query: 67  ECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLLQRGVENW 123
           E L+ LG  EFTGT EP EA+  I+TL+KCFRV QC ++R+VDLA+FLLQ   E+W
Sbjct: 65  ERLEALGTTEFTGTTEPREADKRIKTLEKCFRVTQCSQERKVDLAMFLLQEYKEDW 115

[Close]

BLAST of PI0002986 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 1   MPRGRGRSRSGSRSRTRESTEPTMNN--SEAHSINPDARRVMEEELYDQVAQQMINGL-- 60
           MP+GR R    + + +  + E  M +  S+A S  P     +EE+L D++AQ++I G+  
Sbjct: 1   MPQGRPRKHPDAEA-SNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRL 60

Query: 61  -ARDPEKKFGIECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLL 120
              D EKK+GIE LK LGA  F GT  P +AE W+  ++KCF+V +C EDR+V+LA FLL
Sbjct: 61  AQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 120

Query: 121 QRGVENWWTLEEGRRR 132
           Q G E+WW +EE RRR
Sbjct: 121 QNGAEDWWHMEESRRR 135

[Close]

BLAST of PI0002986 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 1   MPRGRGRSR-SGSRSRTRESTEPTMNNSEAHSINPDARRVMEEELYDQVAQQMINGL--- 60
           MPRG+ R       S   +        S+A S  P     +EE+L D++AQ++++G+   
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  ARDPEKKFGIECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLLQ 120
             DPEKK+G E LK LGA  F GT  P + E W+  ++KCFRV +  EDR+V+LA FLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 RGVENWWTLEEGRRR 132
              E+WW +EE RRR
Sbjct: 121 NDAEDWWRMEESRRR 135

[Close]

BLAST of PI0002986 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 21  EPTMNNSEAHSINPDARRVMEEELYDQVAQQMINGLARDPEKKFGIECLKVLGAQEFTGT 80
           EPT+ +SEAH++NP+ARR  EE LYD+ AQ++IN LA+  +K FGIE +K LGA EF G 
Sbjct: 2   EPTI-DSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGI 61

Query: 81  IEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLLQRGVENWWTLEEGRR 131
              EEAE WIRTL+KCFRVMQCP++RRV+LA+FLL    E+WW LEE RR
Sbjct: 62  ENHEEAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDWWILEENRR 110

[Close]

BLAST of PI0002986 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-24
Identity = 67/140 (47.86%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 1   MPRGRGRSRSGSRSRTRESTEPTMNN--SEAHSINPDARRVMEEELYDQVAQQMINGL-- 60
           MPRGR R    +++ +  + E  M +  S+A S  P     MEE+L D++AQ++I+G+  
Sbjct: 20  MPRGRPRKHPDAKT-SNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 79

Query: 61  -ARDPEKKFGIECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLL 120
              DPEKK+GIE LK LGA  F GT  P +AE W+  ++KCFRV +CPEDR+V+LA FLL
Sbjct: 80  AQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFLL 139

Query: 121 QRG----VENWWTLEEGRRR 132
           Q G     E+WW +EE RRR
Sbjct: 140 QNGGGAKGEDWWRMEESRRR 158

[Close]

BLAST of PI0002986 vs. NCBI nr
Match: KAA0066608.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-23
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 7   RSRSGSRSRTRESTEPTMNNSEAHSINPDARRVMEEELYDQVAQQMINGLARDPEKKFGI 66
           R+R GS    R++TEPT+ + E H +N D RR  EE +YD+VAQ +I+ + +  EKKFGI
Sbjct: 5   RARVGS----RKTTEPTI-DLEVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGI 64

Query: 67  ECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLLQRGVENW 123
           E L+ LG  EFTGT EP EA+  I+TL+KCFRV QC ++R+VDLA+FLLQ   E+W
Sbjct: 65  ERLEALGTTEFTGTTEPREADKRIKTLEKCFRVTQCSQERKVDLAMFLLQEYKEDW 115

[Close]

BLAST of PI0002986 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 1   MPRGRGRSRSGSRSRTRESTEPTMNN--SEAHSINPDARRVMEEELYDQVAQQMINGL-- 60
           MP+GR R    + + +  + E  M +  S+A S  P     +EE+L D++AQ++I G+  
Sbjct: 1   MPQGRPRKHPDAEA-SNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRL 60

Query: 61  -ARDPEKKFGIECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLL 120
              D EKK+GIE LK LGA  F GT  P +AE W+  ++KCF+V +C EDR+V+LA FLL
Sbjct: 61  AQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 120

Query: 121 QRGVENWWTLEEGRRR 132
           Q G E+WW +EE RRR
Sbjct: 121 QNGAEDWWHMEESRRR 135

[Close]

BLAST of PI0002986 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-21
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 1   MPRGRGRSR-SGSRSRTRESTEPTMNNSEAHSINPDARRVMEEELYDQVAQQMINGL--- 60
           MPRG+ R       S   +        S+A S  P     +EE+L D++AQ++++G+   
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  ARDPEKKFGIECLKVLGAQEFTGTIEPEEAENWIRTLKKCFRVMQCPEDRRVDLAIFLLQ 120
             DPEKK+G E LK LGA  F GT  P + E W+  ++KCFRV +  EDR+V+LA FLLQ
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLLQ 120

Query: 121 RGVENWWTLEEGRRR 132
              E+WW +EE RRR
Sbjct: 121 NDAEDWWRMEESRRR 135

The following BLAST results are available for this feature:

BLAST of PI0002986 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002986 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI31	5.8e-31	62.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1	[more]
A0A5D3DES5	2.4e-24	47.86	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CSN0	9.0e-24	54.31	A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7SJ99	1.0e-22	45.59	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	3.2e-21	42.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of PI0002986 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61535.1	1.2e-30	62.73	hypothetical protein Csa_006696 [Cucumis sativus]	[more]
KAA0035225.1	4.9e-24	47.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
KAA0066608.1	1.9e-23	54.31	A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase ancho...	[more]
KAA0026280.1	2.1e-22	45.59	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]
KAA0036813.1	6.6e-21	42.96	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0002986 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002986.1	PI0002986.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups