PI0002916 (gene) Melon (PI 482460) v1

Overview


Name	PI0002916
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr10: 11978147 .. 11978812 (-)
RNA-Seq Expression	PI0002916
Synteny	PI0002916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTCGTCACGGGCGCCTAAACACTTGTGGACGAGAGAGGAGGAGTCCACCCTGGTTGAGTGCTTGGTGGAATTGGTCTCTGTCGGTGGTTGGAAGTCGGACAACAGGACCTTTAAACCCGGTACCTAGCACAGATACAGAGAATGATGACGGAGAAGCTGCCGGGAACTAACATCCAGGGTTCCCCGACTATTGACTGTCGGATAAAGACCCTTAAGAAGTCATTCCAGGACATAGTAGAAATGTGCGGCCCATCGTGCAGTGGGTTTGGTTGGAACGATGAAATAAAGTGCATCATCGCGGAGAAGGATCTGTTCAACAATTGGGTGAAGGTAGGATACTCATTTTGTCAACCATTATTCGTTCATATTAGTAAAAAAAAACTGACAATTTATTTGAAAATTTCCATAGAGCCATCCTGCCGCTAAGGGCCTCCTAAACAAACTGTTTCTCTATTATAACGAGCTGAGCTACGTGTTCGGGAAAGATCGTGCTACGGAAGCACACACGGAGACGTTTGTCGATGTAGGGTTAAATGTGCTTGGAAGGTACGGAAGATTTCCCACTAACGATGGAAACAATGTGGAGATCCCTATAATGTACAGTCAGAGACTCAACATATCGCCGACGACATCATGGGCTTACGACCTGGTTGCTTGA

mRNA sequence

ATGGCAAGTTCGTCACGGGCGCCTAAACACTTGTGGACGAGAGAGGAGGAGTCCACCCTGGTTGAGTGCTTGGTGGAATTGGTCTCTAGCCATCCTGCCGCTAAGGGCCTCCTAAACAAACTGTTTCTCTATTATAACGAGCTGAGCTACGTGTTCGGGAAAGATCGTGCTACGGAAGCACACACGGAGACGTTTGTCGATGTAGGGTTAAATGTGCTTGGAAGGTACGGAAGATTTCCCACTAACGATGGAAACAATGTGGAGATCCCTATAATGTACAGTCAGAGACTCAACATATCGCCGACGACATCATGGGCTTACGACCTGGTTGCTTGA

Coding sequence (CDS)

ATGGCAAGTTCGTCACGGGCGCCTAAACACTTGTGGACGAGAGAGGAGGAGTCCACCCTGGTTGAGTGCTTGGTGGAATTGGTCTCTAGCCATCCTGCCGCTAAGGGCCTCCTAAACAAACTGTTTCTCTATTATAACGAGCTGAGCTACGTGTTCGGGAAAGATCGTGCTACGGAAGCACACACGGAGACGTTTGTCGATGTAGGGTTAAATGTGCTTGGAAGGTACGGAAGATTTCCCACTAACGATGGAAACAATGTGGAGATCCCTATAATGTACAGTCAGAGACTCAACATATCGCCGACGACATCATGGGCTTACGACCTGGTTGCTTGA

Protein sequence

MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNISPTTSWAYDLVA

Homology

[Close]

BLAST of PI0002916 vs. ExPASy TrEMBL
Match: A0A5A7TB06 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00390 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.1e-25
Identity = 65/119 (54.62%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELV-------------------SSHPAAKGLLNKL 60
           M++S+RAP+H+WT+EEE TLVECL+ELV                    SHPAAKGLLNKL
Sbjct: 89  MSTSNRAPRHVWTKEEEDTLVECLMELVLMGGWKSDNGTFRPGYLAQLSHPAAKGLLNKL 148

Query: 61  FLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS 101
           F YY+E +YVFG+DRAT    +TFVDVG N  G Y  F   DGN  E PI+YSQR+++S
Sbjct: 149 FPYYDECTYVFGRDRATGRLAKTFVDVGSNEPGGYDIFDMGDGNE-EFPIVYSQRIDLS 206

[Close]

BLAST of PI0002916 vs. ExPASy TrEMBL
Match: A0A5D3BP98 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00510 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.3e-24
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEA 60
           MA+SSRAPKH+W +E+E TLVECLVEL  SH A K LLNK F YY+EL+YVF +DRAT  
Sbjct: 133 MATSSRAPKHVWMKEKEDTLVECLVEL--SHLATKSLLNKPFYYYDELAYVFERDRATGR 192

Query: 61  HTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS 101
             ETFVD+G N    Y  F  +DGN+++ P MYSQ +++S
Sbjct: 193 FIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMS 230

[Close]

BLAST of PI0002916 vs. ExPASy TrEMBL
Match: A0A5A7TBB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001040 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.5e-24
Identity = 64/131 (48.85%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVS------------------------------- 60
           M++S+RAP+H+WT+EEE TLV+CL+ELVS                               
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVKCLMELVSMGGWKSNNGTFCPGYLAQLVRMMAEKLPGCQ 60

Query: 61  SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEI 101
           SHPAAKGLLNKLF YY+EL+YVFG+DRAT    ETF DVG N    + RF   DGN  E 
Sbjct: 61  SHPAAKGLLNKLFPYYDELTYVFGRDRATSRFVETFADVGSNEPNGHDRFDMEDGNE-EF 120

[Close]

BLAST of PI0002916 vs. ExPASy TrEMBL
Match: A0A5A7T5F8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00400 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.1e-23
Identity = 65/132 (49.24%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVS------------------------------- 60
           M++S+RAP+H+WT+E+E TLVECL+ELVS                               
Sbjct: 1   MSTSNRAPRHVWTKEKEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMVEKLPGCQ 60

Query: 61  SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVL-GRYGRFPTNDGNNVE 101
           SHPAAKGLLNK F YY+EL+YVFG+DRAT   TETF DVG N   GRY RF   DGN  +
Sbjct: 61  SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFTETFADVGSNEPGGRYDRFDMGDGNE-D 120

[Close]

BLAST of PI0002916 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEA 60
           MA+SS APKH+WT+EE+ TLVECLVEL  SHPAAKGL NK F YY+EL+YVFG DR  + 
Sbjct: 1   MATSSCAPKHVWTKEEKDTLVECLVEL--SHPAAKGLFNKPFPYYDELAYVFGCDRMMDG 60

Query: 61  HTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS 101
             +TF DVG N    Y RF   DGN  E P MYSQ +++S
Sbjct: 61  FVKTFDDVGSNKPVEYKRFDMLDGNE-EFPSMYSQGIDMS 97

[Close]

BLAST of PI0002916 vs. NCBI nr
Match: KAA0040490.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 65/119 (54.62%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELV-------------------SSHPAAKGLLNKL 60
           M++S+RAP+H+WT+EEE TLVECL+ELV                    SHPAAKGLLNKL
Sbjct: 89  MSTSNRAPRHVWTKEEEDTLVECLMELVLMGGWKSDNGTFRPGYLAQLSHPAAKGLLNKL 148

Query: 61  FLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS 101
           F YY+E +YVFG+DRAT    +TFVDVG N  G Y  F   DGN  E PI+YSQR+++S
Sbjct: 149 FPYYDECTYVFGRDRATGRLAKTFVDVGSNEPGGYDIFDMGDGNE-EFPIVYSQRIDLS 206

[Close]

BLAST of PI0002916 vs. NCBI nr
Match: TYK00096.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEA 60
           MA+SSRAPKH+W +E+E TLVECLVEL  SH A K LLNK F YY+EL+YVF +DRAT  
Sbjct: 133 MATSSRAPKHVWMKEKEDTLVECLVEL--SHLATKSLLNKPFYYYDELAYVFERDRATGR 192

Query: 61  HTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS 101
             ETFVD+G N    Y  F  +DGN+++ P MYSQ +++S
Sbjct: 193 FIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMS 230

[Close]

BLAST of PI0002916 vs. NCBI nr
Match: KAA0040600.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05642.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 64/131 (48.85%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVS------------------------------- 60
           M++S+RAP+H+WT+EEE TLV+CL+ELVS                               
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVKCLMELVSMGGWKSNNGTFCPGYLAQLVRMMAEKLPGCQ 60

Query: 61  SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVLGRYGRFPTNDGNNVEI 101
           SHPAAKGLLNKLF YY+EL+YVFG+DRAT    ETF DVG N    + RF   DGN  E 
Sbjct: 61  SHPAAKGLLNKLFPYYDELTYVFGRDRATSRFVETFADVGSNEPNGHDRFDMEDGNE-EF 120

[Close]

BLAST of PI0002916 vs. NCBI nr
Match: KAA0036695.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 65/132 (49.24%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVS------------------------------- 60
           M++S+RAP+H+WT+E+E TLVECL+ELVS                               
Sbjct: 1   MSTSNRAPRHVWTKEKEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMVEKLPGCQ 60

Query: 61  SHPAAKGLLNKLFLYYNELSYVFGKDRATEAHTETFVDVGLNVL-GRYGRFPTNDGNNVE 101
           SHPAAKGLLNK F YY+EL+YVFG+DRAT   TETF DVG N   GRY RF   DGN  +
Sbjct: 61  SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFTETFADVGSNEPGGRYDRFDMGDGNE-D 120

[Close]

BLAST of PI0002916 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-22
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1   MASSSRAPKHLWTREEESTLVECLVELVSSHPAAKGLLNKLFLYYNELSYVFGKDRATEA 60
           MA+SS APKH+WT+EE+ TLVECLVEL  SHPAAKGL NK F YY+EL+YVFG DR  + 
Sbjct: 1   MATSSCAPKHVWTKEEKDTLVECLVEL--SHPAAKGLFNKPFPYYDELAYVFGCDRMMDG 60

Query: 61  HTETFVDVGLNVLGRYGRFPTNDGNNVEIPIMYSQRLNIS 101
             +TF DVG N    Y RF   DGN  E P MYSQ +++S
Sbjct: 61  FVKTFDDVGSNKPVEYKRFDMLDGNE-EFPSMYSQGIDMS 97

The following BLAST results are available for this feature:

BLAST of PI0002916 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TB06	5.1e-25	54.62	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BP98	7.3e-24	59.00	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TBB0	9.5e-24	48.85	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5F8	8.1e-23	49.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U4I8	1.1e-22	61.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0002916 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040490.1	1.0e-24	54.62	retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon p...	[more]
TYK00096.1	1.5e-23	59.00	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0040600.1	2.0e-23	48.85	retrotransposon protein [Cucumis melo var. makuwa] >TYK05642.1 retrotransposon p...	[more]
KAA0036695.1	1.7e-22	49.24	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050190.1	2.2e-22	61.00	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p...	[more]

BLAST of PI0002916 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 28..68
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 28..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002916.1	PI0002916.1	mRNA