PI0002831 (gene) Melon (PI 482460) v1

Overview


Name	PI0002831
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	High mobility group B protein 2
Location	chr07: 24482486 .. 24483832 (+)
RNA-Seq Expression	PI0002831
Synteny	PI0002831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGGTCTTATATGTTTATTTTCTAGCTTTGATCGACCCTAGATCTACGAAGCTTCATTGTTTTTCAATTACCTGTTCAAAGCTAGGCGTTGACTTTTTCCTATTTGATTGATCGCTTTTGGTGATTTTTTTATCCTTTTAATTGTAGGCTTGCTGTGAAAAAAGGTACAGCCAATGCGGGTAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGTAATTTTTTATCTTTTAACTTACCGTTCTGAATTATTCTTATTATCTGCAAATTGTCTAATTTGGATGGTTTTAGAGTTGCGAAAAAAATTGTAAACAAGGATACAAAGACGACGATCTTGTTTTCCGTGAGCGACTACCGATGTTCGAATTAATTAGAAATACCTTTTGGAAATATCAGTGAATATTAGAATTGTTGATTTTCTACAAAAATAGATTCCTTTGATTTGTTGGGTCTATTTGGCATATAGACCCTTTGTTTTTGCAGTCGTTTTCTTTAGGTAAGTCGAGTACCATCTGACCCATTTGCTGTCCTGTTATTGCATTTGTTTTATTATCAAAGGGAAGAGTTCAGGAAGAAGTTCAACGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTAAGCTATTTATCTTTGTACTAGTTAGCTCTTTTAATTTCTGTTTCCATTTGAATTTTCGTGACTCTTTTTTGGGAATGAGCGATGATATTGGTTTACAAATGATGCAATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGACAGATGCTGTACGTGATAGCTATCATAGTATTTCTTATACTTCTCCTGATATTATAAACTCTCTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAGCATGAAAGCCTATAACAAGAAACAGGTATATTCTCTTGGGAATTAAGCATTTCGATTGCAGCACTTATTTTCTTATGTGAATGAATTCTCATTTATCGTGTGAGTTCAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGTTAGCTTCCTCAAGGAGTTTAATTAATTAAACATCTAATGTTGGAACTGTTTTTTAATTTCATCTTTTTCGCCTCCAATTTTGCAGGAGGACGATGACGAGTGA

mRNA sequence

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCTGTGAAAAAAGGTACAGCCAATGCGGGTAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAACGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGACAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAGCATGAAAGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Coding sequence (CDS)

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCTGTGAAAAAAGGTACAGCCAATGCGGGTAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAACGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGACAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAGCATGAAAGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Protein sequence

MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE

Homology

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BLAST of PI0002831 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-46
Identity = 110/152 (72.37%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGTANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK+ESK+AD KLAV KKG A   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGA 120
            FN+E+P NKAVSAVGKAAG KWK+M+DAEKAPY+AK++KRKVEYEK+M+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

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BLAST of PI0002831 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 96/149 (64.43%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EE+P NK+V+AVGKA G+KWKS++D+EKAPY+AKADKRKVEYEK+MKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

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BLAST of PI0002831 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-37
Identity = 94/149 (63.09%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKS++D+EKAPY+AKA+KRKVEYEK++KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of PI0002831 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.4e-37
Identity = 96/149 (64.43%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSK+   K+D KLAVKK  A+   K +KKA KDPNKPKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADT--KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           E++PNNK+V+ VGKA G KWK +T AEKAP+I+KA+KRK EYEK+++AYNKKQA+G  AA
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EE+ES+KS SEVNDD++  +GS E+D ++
Sbjct: 121 EEEESDKSRSEVNDDDEDQDGSGEDDSED 142

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BLAST of PI0002831 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-34
Identity = 95/158 (60.13%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 60
           MKG KSK  + KAD KLAVK   A    KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 61  NEENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANA 120
            E+NP NK+V+AVGKAAG +WKS+++++KAPY+AKA+K K+EY K++ AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 121 A--------EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           A        +E+ES+KS SEVN DED +EGSEE++DD+
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDDD 156

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BLAST of PI0002831 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 140/149 (93.96%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKG ANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM++A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

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BLAST of PI0002831 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKG   AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM+DAEKAPYIAKADKRKVEYEK+MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           +EDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of PI0002831 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.1e-62
Identity = 139/149 (93.29%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKG ANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM++A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EEDESEKS+SEVNDDE+GDEGSEEEDDD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 149

[Close]

BLAST of PI0002831 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 137/149 (91.95%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKAD KL+VKKG A AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS++DAEKAPYIAKADKRKVEYEK+MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EEDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 149

[Close]

BLAST of PI0002831 vs. ExPASy TrEMBL
Match: A0A5A7VCD7 (HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003710 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.4e-56
Identity = 134/149 (89.93%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS         KLAVKKG   AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKS---------KLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM+DAEKAPYIAKADKRKVEYEK+MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           +EDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 138

[Close]

BLAST of PI0002831 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKS+SKKAD KLAVKKG ANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRK+EYEK+MKAYNKKQASGANA 
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EEDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 149

[Close]

BLAST of PI0002831 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.4 bits (633), Expect = 3.8e-62
Identity = 140/149 (93.96%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKG ANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM++A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

[Close]

BLAST of PI0002831 vs. NCBI nr
Match: KAG6591217.1 (DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.4 bits (633), Expect = 3.8e-62
Identity = 140/149 (93.96%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKG ANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 226 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 285

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM++A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 286 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 345

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 346 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 374

[Close]

BLAST of PI0002831 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKG   AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM+DAEKAPYIAKADKRKVEYEK+MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           +EDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of PI0002831 vs. NCBI nr
Match: XP_022975791.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 247.3 bits (630), Expect = 8.4e-62
Identity = 139/149 (93.29%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKG ANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM++A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           EEDESEKS+SEVNDDE+GDEGSEEEDDD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 149

[Close]

BLAST of PI0002831 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-39
Identity = 96/149 (64.43%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EE+P NK+V+AVGKA G+KWKS++D+EKAPY+AKADKRKVEYEK+MKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of PI0002831 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 157.5 bits (397), Expect = 8.2e-39
Identity = 95/148 (64.19%), Postives = 121/148 (81.76%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKS++D+EKAPY+AKA+KRKVEYEK++KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDD 149
           E++ES+KS+SEVND++D ++GSEEEDDD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of PI0002831 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 93/144 (64.58%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           EE+P NK+V+AVGKA G+KWKS++D+EKAPY+AKADKRKVEYEK+MKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of PI0002831 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-38
Identity = 94/149 (63.09%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKS++D+EKAPY+AKA+KRKVEYEK++KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 150
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of PI0002831 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 155.6 bits (392), Expect = 3.1e-38
Identity = 93/147 (63.27%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGTANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKVEYEKSMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKS++D+EKAPY+AKA+KRKVEYEK++KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDD 148
           E++ES+KS+SEVND++D ++GSEE+DD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEDDD 142

The following BLAST results are available for this feature:

BLAST of PI0002831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	3.0e-46	72.37	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	3.0e-38	64.43	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	3.3e-37	63.09	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40619	4.4e-37	64.43	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P27347	5.9e-34	60.13	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of PI0002831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FF34	1.8e-62	93.96	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A1S3BW96	2.4e-62	95.97	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1IF57	4.1e-62	93.29	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A6J1CNM1	3.8e-60	91.95	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A5A7VCD7	7.4e-56	89.93	HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G...	[more]

BLAST of PI0002831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896795.1	6.9e-64	95.97	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
XP_022936925.1	3.8e-62	93.96	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]
KAG6591217.1	3.8e-62	93.96	DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_008452973.1	4.9e-62	95.97	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_022975791.1	8.4e-62	93.29	HMG1/2-like protein [Cucurbita maxima]	[more]

BLAST of PI0002831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	2.1e-39	64.43	high mobility group B3	[more]
AT1G20693.3	8.2e-39	64.19	high mobility group B2	[more]
AT1G20696.3	1.4e-38	64.58	high mobility group B3	[more]
AT1G20693.1	2.4e-38	63.09	high mobility group B2	[more]
AT1G20693.2	3.1e-38	63.27	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..149
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..148
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 41..107 e-value: 1.48805E-14 score: 62.2601
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 40..111 e-value: 6.3E-26 score: 102.1
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 41..110 e-value: 1.3E-23 score: 83.2
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 41..110 score: 20.450108
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 24..127 e-value: 1.8E-26 score: 94.3
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 28..115
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002831.1	PI0002831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin