PI0002804 (gene) Melon (PI 482460) v1

Overview


Name	PI0002804
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	chr06: 20747001 .. 20749228 (-)
RNA-Seq Expression	PI0002804
Synteny	PI0002804

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAAACTTATCCACAAACAAGAGAGATAGAGTGATGATGTCATCAAGAGAGGTCTTGAATTTACAAACTTGAGAGGGAGTGAAGATTGTGGGTTTTTGGAAGAAGAAAAGGGAAAGTTCCGTCAAAAGTCCAAAACAAGCAACAGATAAGACTGAATTCCAAGCACAGCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCCCCTTCTCCACCGAATCACGCTGCCGCTCAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCTAACCATTCGGAGCCCTTATCTGCGGAATTGGCCTCCGTTATCTGTCCCTCCCTCGCCTTCGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGATTGTGGATGACAATGAACCCGAGGAGCGCCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGTCTCTTTCTACAATTTCTTTTTGGGACTTGTTTTCTTACTTCTCAAACTCTGTGACACCTTTTTTTGTTGAGATTTTGATTGATTGGATTCTTCTCCCCTTCAAGTTGTTTTGGATCGTGTTCTGTTTGAATTTGATTGCTGGGAAGAAATAGATACCGTATCAACAATTGGCTTCGGAATTTTAAGAGTTCCTAGAGATTTACGGGGGCTTATCTTTTTACTCTTCCGAGCAACTTAGGTTATGGACAATAGAGAGTGAAAAAACAGTATCTAAGTGGACTAGAGAGAAAACGTCTCTGTGTTATGAATAATGCCATGTGAATCATTGATATTAACACTTGTTAGATGTATGAGAAAGAAATATCTCAAATTTATGTAGTGGTTATTTGGGAGATGTATTTTGAGTTTGCATCCAATAGTTATTGTGAGGTAGCTGAGTTGTGGTAGTCTCGTTGAATAATTTGTTCGAAACTAAAGCAGACTCTTGAAACATTGTATATTTTTTATATTTTTTTCAATCCAAACATAGGATAGTAGATAAAGGTACCTTTTCCCATCTCAAAGGTCTCGAAGGTAGTCTGCTTCTCCACCCTCACAACTATTCAACACATGCACAAAAGTGCATTTTTTCCATTGTTCTTCTACTTATTAAAGTGGAACTTGTAGAATTTACAGAAGACTTAAAACAGGATCTATTCTATAGGTTGTACAACTGTGTTTAAAAAGATTATAAATCTTTGTGTTGTGTAATTTTATTTCTTTTTTTTTTTTTTTCGTTTTAGTTATTATAATGTAACACTTCACATCCTGCAGAACCTTCAAATTCCTAACATCTTTATCGTAAAACCAAATACCACTATGAAACTTCTACTCAAGTTGGAAGATTGTTGTAGAGAATGTCTTATTAGAGATTTTTAGTGCCCAATTAAGTGAATTCTCGAGGCCCCAGTTAGCTAATTACAATGTTTTGTCGAAGGAAAATGGATGGAATTTATGTGCTAAGTTGTATCATGAAACTAAGTTATGATTTGGTTGATGAACAGGCGGCCACAGTCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAGAACATTCCTAATTAACCTGATCCAAAAGTTTGCCCTCACCAAAATGTTTAATGTTTTCTAATCATCTTTTGATTTTGGAAAGCTGTTAATTCTCTGTAATGTAAGTTATTTTCCATGTAATATCTTCTTTAGTTGAGAAGTTTTTGCAATATTCCTTTTGAATAAATAGAAATGATCCCCGTTTACATATAATACTGGCAAACACCTTATAAAGGTAATCTCCTAGATCCAGGCAGTAAGAAATCTTTGTAGCTTATAAATTAGGAAGAGCTACATAATCCACCAGTTTGAAGGCAATGAAGTTTGAGGATTCTGGTTCATGGACTGTTTGGTCCAAGGAATTCGGAAGGGGTTGGGGGAAGTGAAGTTGTGAATTGGGGATGTGAAGTTGTGAATGGAAATTTGTAGAGGACTCAAAAATGGCCAAATAACCCAAATTTTTAAAAAAATGTCAAATAATCATTTGCTGA

mRNA sequence

TGGGAAACTTATCCACAAACAAGAGAGATAGAGTGATGATGTCATCAAGAGAGGTCTTGAATTTACAAACTTGAGAGGGAGTGAAGATTGTGGGTTTTTGGAAGAAGAAAAGGGAAAGTTCCGTCAAAAGTCCAAAACAAGCAACAGATAAGACTGAATTCCAAGCACAGCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCCCCTTCTCCACCGAATCACGCTGCCGCTCAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCTAACCATTCGGAGCCCTTATCTGCGGAATTGGCCTCCGTTATCTGTCCCTCCCTCGCCTTCGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGATTGTGGATGACAATGAACCCGAGGAGCGCCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGCGGCCACAGTCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAGAACATTCCTAATTAACCTGATCCAAAAGTTTGCCCTCACCAAAATGTTTAATGTTTTCTAATCATCTTTTGATTTTGGAAAGCTGTTAATTCTCTGTAATGTAAGTTATTTTCCATGTAATATCTTCTTTAGTTGAGAAGTTTTTGCAATATTCCTTTTGAATAAATAGAAATGATCCCCGTTTACATATAATACTGGCAAACACCTTATAAAGGTAATCTCCTAGATCCAGGCAGTAAGAAATCTTTGTAGCTTATAAATTAGGAAGAGCTACATAATCCACCAGTTTGAAGGCAATGAAGTTTGAGGATTCTGGTTCATGGACTGTTTGGTCCAAGGAATTCGGAAGGGGTTGGGGGAAGTGAAGTTGTGAATTGGGGATGTGAAGTTGTGAATGGAAATTTGTAGAGGACTCAAAAATGGCCAAATAACCCAAATTTTTAAAAAAATGTCAAATAATCATTTGCTGA

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCCCCTTCTCCACCGAATCACGCTGCCGCTCAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCTAACCATTCGGAGCCCTTATCTGCGGAATTGGCCTCCGTTATCTGTCCCTCCCTCGCCTTCGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGATTGTGGATGACAATGAACCCGAGGAGCGCCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGCGGCCACAGTCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAGAACATTCCTAATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEENIPN

Homology

[Close]

BLAST of PI0002804 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 6.6e-35
Identity = 97/187 (51.87%), Postives = 121/187 (64.71%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPP----PPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQ 60
           MAS SS  +FL P  P     PP       +S+P  PN       +L S+  S+++  ++
Sbjct: 1   MASTSSLLNFLSPLFPSNTSLPP-------SSNPKFPNP-----NSLSSQQNSISISSKK 60

Query: 61  GPN----HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVM 120
             N      E    +L +V+CPSLAF+NT++FRSAYNVQV+VDDNE EERLLNRFRREVM
Sbjct: 61  HENAAIAKKEEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVM 120

Query: 121 RAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR--PQSRFTPQNKQDVPATKQEADD 178
           RAGVIQECKRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D 
Sbjct: 121 RAGVIQECKRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDG 175

[Close]

BLAST of PI0002804 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 91  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 149
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of PI0002804 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 92  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 148
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of PI0002804 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPEEE+
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 IP 183
           IP
Sbjct: 181 IP 182

[Close]

BLAST of PI0002804 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.7e-91
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPEE +
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 IP 183
           IP
Sbjct: 229 IP 230

[Close]

BLAST of PI0002804 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPE+E+
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

Query: 181 IPN 184
           IP+
Sbjct: 188 IPS 190

[Close]

BLAST of PI0002804 vs. ExPASy TrEMBL
Match: A0A0A0LDL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPE+E+
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

Query: 181 IPN 184
           IP+
Sbjct: 181 IPS 183

[Close]

BLAST of PI0002804 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 162/178 (91.01%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKP QP IA SPSP N AAAQFQTLKSRDGSVAL PQQ P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEE 179
           KRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE
Sbjct: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEE 177

[Close]

BLAST of PI0002804 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 345.1 bits (884), Expect = 3.6e-91
Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPEEE+
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 IP 183
           IP
Sbjct: 181 IP 182

[Close]

BLAST of PI0002804 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPEE +
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 IP 183
           IP
Sbjct: 229 IP 230

[Close]

BLAST of PI0002804 vs. NCBI nr
Match: AAL35983.1 (ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Protein S21 [Spinacia oleracea])

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPE+E+
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

Query: 181 IPN 184
           IP+
Sbjct: 188 IPS 190

[Close]

BLAST of PI0002804 vs. NCBI nr
Match: XP_004145671.1 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypothetical protein Csa_017561 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP NHAA QFQTLKSRDGSVAL PQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEEEN 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPE+E+
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

Query: 181 IPN 184
           IP+
Sbjct: 181 IPS 183

[Close]

BLAST of PI0002804 vs. NCBI nr
Match: XP_038900112.1 (30S ribosomal protein S21, chloroplastic [Benincasa hispida])

HSP 1 Score: 331.3 bits (848), Expect = 5.4e-87
Identity = 174/184 (94.57%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNH--AAAQFQTLKSRDGSVALKPQQGP 60
           MASLSSFFSFLLPSKPPPPKPHQP I SSPSP NH  AAAQ QTLKS+DGSV+LKPQQGP
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIVSSPSPANHAAAAAQCQTLKSKDGSVSLKPQQGP 60

Query: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 120
           NHSEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQ
Sbjct: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVLVDDNEPEERLLNRFRREVMRAGVIQ 120

Query: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPATKQEADDDNWDLPEE 180
           ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQ+RFTPQNKQDVPATKQEADDDNWDLPEE
Sbjct: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180

Query: 181 ENIP 183
           ENIP
Sbjct: 181 ENIP 184

[Close]

BLAST of PI0002804 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-39
Identity = 90/182 (49.45%), Postives = 126/182 (69.23%), Query Frame = 0


Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGS----VALKPQQGP 62
           SL+SF SF+ P K            + P+PP +      T+  R  +     ++  ++  
Sbjct: 6   SLTSFISFISPFKS----------QTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETS 65

Query: 63  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 122
           + +  LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQ
Sbjct: 66  STASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQ 125

Query: 123 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDVPAT----KQEADDDNWD 177
           ECKRRR+FEN QD +KR+TR+AAKRN++RRPQ+RFT + +++  A     K++ ++DNW+
Sbjct: 126 ECKRRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWE 177

[Close]

BLAST of PI0002804 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-20
Identity = 69/185 (37.30%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           + SLS   S LL SKPP P   +P   + PS  +   +Q  ++ ++  +          H
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPI--TLPSSVSARTSQHLSMTTKILTA--------EH 65

Query: 61  SEPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
            + ++     V  PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RAGV+QE
Sbjct: 66  DDVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQE 125

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQSRFTPQNKQDV-----PATKQEADDDNWD 180
            +RRRFFE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  DD+W+
Sbjct: 126 SRRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWE 176

[Close]

BLAST of PI0002804 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 81.3 bits (199), Expect = 9.1e-16
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60
           + SLS   S LL SKPP P   +P   + PS  +   +Q  ++ ++  +          H
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPI--TLPSSVSARTSQHLSMTTKILTA--------EH 65

Query: 61  SEPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
            + ++     V  PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RAGV+QE
Sbjct: 66  DDVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQE 125

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRR 148
            +RRRFFE++ + + RKT+EAAK+ R+R
Sbjct: 126 SRRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of PI0002804 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	6.6e-35	51.87	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
P48949	2.7e-04	46.55	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B8GPU0	4.6e-04	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]

BLAST of PI0002804 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C287	1.8e-91	98.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	8.7e-91	97.80	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
Q8VWX5	2.2e-89	95.08	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]
A0A0A0LDL7	2.2e-89	95.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1	[more]
A0A6J1J5C2	1.5e-79	91.01	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of PI0002804 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042889.1	3.6e-91	98.35	hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK0529...	[more]
XP_008450090.2	1.8e-90	97.80	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]
AAL35983.1	4.5e-89	95.08	ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Pr...	[more]
XP_004145671.1	4.5e-89	95.08	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypotheti...	[more]
XP_038900112.1	5.4e-87	94.57	30S ribosomal protein S21, chloroplastic [Benincasa hispida]	[more]

BLAST of PI0002804 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	2.6e-39	49.45	Ribosomal protein S21 family protein	[more]
AT5G63300.1	6.1e-20	37.30	Ribosomal protein S21 family protein	[more]
AT5G63300.2	9.1e-16	39.86	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 101..110 score: 43.33 coord: 125..135 score: 37.88 coord: 93..101 score: 42.59 coord: 113..123 score: 38.64
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 91..145 e-value: 3.3E-19 score: 68.4
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 90..147 e-value: 3.6E-13 score: 47.1
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 2..179
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 89..145 score: 13.870123
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 104..142 e-value: 2.3E-12 score: 48.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..152
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002804.1	PI0002804.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome