PI0002634 (gene) Melon (PI 482460) v1

Overview
NamePI0002634
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description60S ribosomal protein L28-2 isoform B
Locationchr01: 28884109 .. 28884360 (+)
RNA-Seq ExpressionPI0002634
SyntenyPI0002634
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGGCCAAGCGCCTCAAAAGGCATGAAGCTGCCAGAAAGCGCAGGAAATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGAAATTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGAATCAAGAAATGGGCTAAAGCCGTGGTGGCTTATGCCCGCACAGTAAGCGATCGCTTTGGAAGCTGGCGTCGCTAA

mRNA sequence

ATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGGCCAAGCGCCTCAAAAGGCATGAAGCTGCCAGAAAGCGCAGGAAATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGAAATTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGAATCAAGAAATGGGCTAAAGCCGTGGTGGCTTATGCCCGCACAGTAAGCGATCGCTTTGGAAGCTGGCGTCGCTAA

Coding sequence (CDS)

ATGTCTGTGAAGAAGTCTCTCTCTCTAACAAAGGCCGAGGAGGCCAAGCGCCTCAAAAGGCATGAAGCTGCCAGAAAGCGCAGGAAATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGAAATTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGAATCAAGAAATGGGCTAAAGCCGTGGTGGCTTATGCCCGCACAGTAAGCGATCGCTTTGGAAGCTGGCGTCGCTAA

Protein sequence

MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGIKKWAKAVVAYARTVSDRFGSWRR
Homology
BLAST of PI0002634 vs. ExPASy TrEMBL
Match: A0A5A7UXU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00720 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAEEAKRL RHEAARKRR+SFDLCFSYPELPMERG SLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWRR 84
          KKWAKAVVAYARTVSDRFGS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of PI0002634 vs. ExPASy TrEMBL
Match: A0A0A0KB03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.4e-33
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAEEAKRL RHEAARKRR+SFDLCFSYPE+PMERG SLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWRR 84
          KKWAKAVVAYARTVSDRFGS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of PI0002634 vs. ExPASy TrEMBL
Match: A0A2P5FE88 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKK+LSL + E A   K H+ + +R K +  CFS+ ELPMERG +LKEMDS KLK  I
Sbjct: 1  MSVKKTLSLNRGEAA---KGHQISVRRGK-YGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWR 83
          K+WAKAVVAYAR VS RFG  R
Sbjct: 61 KRWAKAVVAYARQVSGRFGGTR 78

BLAST of PI0002634 vs. ExPASy TrEMBL
Match: A0A7J6HUR0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_023941 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKK+LSL + E A   K  E + KR K +  CFS+ E+ ME G +LKEMDS KLK  I
Sbjct: 1  MSVKKTLSLNRGEAA---KGGEISEKRSKKYGRCFSFMEVRMEAGKTLKEMDSNKLKYDI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWR 83
          K+WAKAVVAYAR VS RFG  R
Sbjct: 61 KRWAKAVVAYARQVSGRFGGSR 79

BLAST of PI0002634 vs. ExPASy TrEMBL
Match: A0A498IZM5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 4   KKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGIKKW 63
           +K+LSL   E  K      AA++ R  FD CFS+ E+  E G SLKEMDSEKLK+GIK+W
Sbjct: 25  RKTLSLNNGEAGKSSGDVVAAKRTR--FDRCFSFMEVSTEPGKSLKEMDSEKLKSGIKRW 84

Query: 64  AKAVVAYARTVSDRFGSWR 83
           AKAVVAYAR VSDRFGS R
Sbjct: 85  AKAVVAYARQVSDRFGSSR 101

BLAST of PI0002634 vs. NCBI nr
Match: KAA0059447.1 (hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK03877.1 hypothetical protein E5676_scaffold347G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAEEAKRL RHEAARKRR+SFDLCFSYPELPMERG SLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWRR 84
          KKWAKAVVAYARTVSDRFGS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of PI0002634 vs. NCBI nr
Match: KGN45542.1 (hypothetical protein Csa_016865 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAEEAKRL RHEAARKRR+SFDLCFSYPE+PMERG SLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWRR 84
          KKWAKAVVAYARTVSDRFGS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of PI0002634 vs. NCBI nr
Match: KAG6593505.1 (hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAEEAKR  RH+AARKRR+SFDLCFS P+L MERG SLKEMDSEKLK+GI
Sbjct: 1  MSVKKSLSLTKAEEAKRSARHDAARKRRRSFDLCFSSPKLQMERGKSLKEMDSEKLKSGI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWRR 84
          +KWAK+VVAYAR VSDRFGSWRR
Sbjct: 61 RKWAKSVVAYARQVSDRFGSWRR 83

BLAST of PI0002634 vs. NCBI nr
Match: KAG6575488.1 (hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 8.3e-27
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKKS SLTKAEEAKR  RH+AARKRR+SFDLCFS PELPME G SLKEMDSEKLK  I
Sbjct: 1  MSVKKSFSLTKAEEAKRPGRHDAARKRRRSFDLCFSSPELPMEYGKSLKEMDSEKLKDAI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWR 83
          +KWAKAVVAYARTVS+RFGS R
Sbjct: 61 RKWAKAVVAYARTVSNRFGSRR 82

BLAST of PI0002634 vs. NCBI nr
Match: PON96105.1 (hypothetical protein TorRG33x02_080350 [Trema orientale])

HSP 1 Score: 87.8 bits (216), Expect = 4.8e-14
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEEAKRLKRHEAARKRRKSFDLCFSYPELPMERGNSLKEMDSEKLKTGI 60
          MSVKK+LSL + E A   K H+ + +R K +  CFS+ ELPMERG +LKEMDS KLK  I
Sbjct: 1  MSVKKTLSLNRGEAA---KGHQISVRRGK-YGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 61 KKWAKAVVAYARTVSDRFGSWR 83
          K+WAKAVVAYAR VS RFG  R
Sbjct: 61 KRWAKAVVAYARQVSGRFGGTR 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXU04.9e-3393.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB038.4e-3392.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1[more]
A0A2P5FE882.3e-1462.20Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV... [more]
A0A7J6HUR01.1e-1359.76Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_023941 PE=4 SV=1[more]
A0A498IZM51.1e-1362.03Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0059447.11.0e-3293.98hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK038... [more]
KGN45542.11.7e-3292.77hypothetical protein Csa_016865 [Cucumis sativus][more]
KAG6593505.11.4e-2985.54hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575488.18.3e-2784.15hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON96105.14.8e-1462.20hypothetical protein TorRG33x02_080350 [Trema orientale][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR36484:SF2OS01G0558700 PROTEINcoord: 1..83
NoneNo IPR availablePANTHERPTHR36484OS01G0558700 PROTEINcoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0002634.1PI0002634.1mRNA