PI0002560 (gene) Melon (PI 482460) v1

Overview


Name	PI0002560
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 8317920 .. 8318746 (-)
RNA-Seq Expression	PI0002560
Synteny	PI0002560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGTAGTCTCAACGCATTCAACAAATTTCTATCAATTCCATCACGCATAACACGTCTTCCACTGCCAGATCATACAGTAAGCAAAGGGCATGTCATACTAGATCACATGACAAGTATGATGCGTTCTATTCCAAATCACACAGCAAGAATAGAGCATCTTATCCCAGATCACACAGCAAGGATAAGACATCTTATACCAAATCACACAACAAGTATGAGGTGTTTCATCACATAGGGTACACAAGATCATCTCATTTCATTTCATCATTTCGAAACATGTTAAATCACATTCATTTATAAATCACTTGCATTTTAAGAAATGGAAAAACATACGAAGAGTTATACAACTCATGGTTTTCTATAACAATACATTTAAGGATTTAAACATATTATAAATCCTTTCATTTTTTACAACATTTTTAGGAAGAACCACTCACAACAATCAACTAGCTTCCTTGCCTAGTTCCTTAGCCAAGAGTTTTCTTCCTTTACTGTGCAACTTCTTGTCGAATTCAAGCTTCTGAAAATGTTGAAATTCTCTCAATCCTTTCTTAAGTAAACTTAGGGTAAAAGTAGCTTAAAAAATGGTCGGACTTCACTTATTTATAAGCTTTTCTAGTGACACTTTTCATGCAGAAATGATTACTTTTGTCTGGCAGTGAGAACCAACCAATGCCAGAATGCCACATGCTACTGTCCATTCCTTATCCTGAATTGCATTGGGCGGCAAAGTCAAATCAATCACCAACTTCTTATGCGAGGATGACATCACTACCTTCCCGGGGAAGTAAAGCTCAAATGCATAAACAGTTTCTTGCATAG

mRNA sequence

ATGCAGAGTAGTCTCAACGCATTCAACAAATTTCTATCAATTCCATCACGCATAACACGTCTTCCACTGCCAGATCATACAGTAAGCAAAGGGCATGTCATACTAGATCACATGACAAGTATGATGCGTTCTATTCCAAATCACACAGCAAGAATAGAGCATCTTATCCCAGATCACACAGCAAGGATAAGACATCTTATACCAAATCACACAACAAGTATGAGTGAGAACCAACCAATGCCAGAATGCCACATGCTACTGTCCATTCCTTATCCTGAATTGCATTGGGCGGCAAAGTCAAATCAATCACCAACTTCTTATGCGAGGATGACATCACTACCTTCCCGGGGAAGTAAAGCTCAAATGCATAAACAGTTTCTTGCATAG

Coding sequence (CDS)

ATGCAGAGTAGTCTCAACGCATTCAACAAATTTCTATCAATTCCATCACGCATAACACGTCTTCCACTGCCAGATCATACAGTAAGCAAAGGGCATGTCATACTAGATCACATGACAAGTATGATGCGTTCTATTCCAAATCACACAGCAAGAATAGAGCATCTTATCCCAGATCACACAGCAAGGATAAGACATCTTATACCAAATCACACAACAAGTATGAGTGAGAACCAACCAATGCCAGAATGCCACATGCTACTGTCCATTCCTTATCCTGAATTGCATTGGGCGGCAAAGTCAAATCAATCACCAACTTCTTATGCGAGGATGACATCACTACCTTCCCGGGGAAGTAAAGCTCAAATGCATAAACAGTTTCTTGCATAG

Protein sequence

MQSSLNAFNKFLSIPSRITRLPLPDHTVSKGHVILDHMTSMMRSIPNHTARIEHLIPDHTARIRHLIPNHTTSMSENQPMPECHMLLSIPYPELHWAAKSNQSPTSYARMTSLPSRGSKAQMHKQFLA

Homology

[Close]

BLAST of PI0002560 vs. ExPASy TrEMBL
Match: A0A5D3BG14 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00690 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-08
Identity = 39/88 (44.32%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 1  MQSSLNAFNKFLSIPSRITRLPLPDHTVSKGHVILDHMTSMMRSIPNHTARIEHLIPDHT 60
          M   LN   KF SI  RI    +P+    K H I DH      S P HT R EHLI D  
Sbjct: 15 MGRGLNTIRKFPSILVRIIHHLMPEQASGKDHFIPDHTARSRHSTPEHTERTEHLILDPK 74

Query: 61 ARIRHLIPNHTTSMSENQPMPECHMLLS 89
           RIRHL P+HTTS S       CH +L+
Sbjct: 75 TRIRHLTPDHTTSES-------CHHVLA 95

[Close]

BLAST of PI0002560 vs. NCBI nr
Match: KAA0037904.1 (uncharacterized protein E6C27_scaffold36G00760 [Cucumis melo var. makuwa] >TYJ98036.1 uncharacterized protein E5676_scaffold487G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 39/88 (44.32%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 1  MQSSLNAFNKFLSIPSRITRLPLPDHTVSKGHVILDHMTSMMRSIPNHTARIEHLIPDHT 60
          M   LN   KF SI  RI    +P+    K H I DH      S P HT R EHLI D  
Sbjct: 15 MGRGLNTIRKFPSILVRIIHHLMPEQASGKDHFIPDHTARSRHSTPEHTERTEHLILDPK 74

Query: 61 ARIRHLIPNHTTSMSENQPMPECHMLLS 89
           RIRHL P+HTTS S       CH +L+
Sbjct: 75 TRIRHLTPDHTTSES-------CHHVLA 95

The following BLAST results are available for this feature:

BLAST of PI0002560 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BG14	5.0e-08	44.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0002560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037904.1	1.0e-07	44.32	uncharacterized protein E6C27_scaffold36G00760 [Cucumis melo var. makuwa] >TYJ98...	[more]

BLAST of PI0002560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002560.1	PI0002560.1	mRNA