PI0002313 (gene) Melon (PI 482460) v1

Overview


Name	PI0002313
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 11163375 .. 11163656 (-)
RNA-Seq Expression	PI0002313
Synteny	PI0002313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTGCAGACTAACACTGGATTACAGTCTACTGAAATTATTGATGTCGAAGAAATGGTGGCAATGTTCCTTCACGTACTTGCGCACGACGTGAAAAATCGTGTCATTCAACATGAGTTCCTATGGTCTGGTGAGACGGTTTCACGACATTTCAACCTGGTACTCCTGGCTGTTTTAAAGCTTTCTGACGAGCTGTTGGCGAAACCACAACCGAAATGGGTGCACAGATGCACGATGGAGGTGGTTTGA

mRNA sequence

ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTGCAGACTAACACTGGATTACAGTCTACTGAAATTATTGATGTCGAAGAAATGGTGGCAATGTTCCTTCACGTACTTGCGCACGACGTGAAAAATCGTGTCATTCAACATGAGTTCCTATGGTCTGGTGAGACGGTTTCACGACATTTCAACCTGGTACTCCTGGCTGTTTTAAAGCTTTCTGACGAGCTGTTGGCGAAACCACAACCGAAATGGGTGCACAGATGCACGATGGAGGTGGTTTGA

Coding sequence (CDS)

ATGGACAGACGATGCTTCGCCATTTTATGCCATCTACTGCAGACTAACACTGGATTACAGTCTACTGAAATTATTGATGTCGAAGAAATGGTGGCAATGTTCCTTCACGTACTTGCGCACGACGTGAAAAATCGTGTCATTCAACATGAGTTCCTATGGTCTGGTGAGACGGTTTCACGACATTTCAACCTGGTACTCCTGGCTGTTTTAAAGCTTTCTGACGAGCTGTTGGCGAAACCACAACCGAAATGGGTGCACAGATGCACGATGGAGGTGGTTTGA

Protein sequence

MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSRHFNLVLLAVLKLSDELLAKPQPKWVHRCTMEVV

Homology

[Close]

BLAST of PI0002313 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLKLSDELLAKPQP 83
           HFN+VLLAV++L DELL KPQP
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQP 148

[Close]

BLAST of PI0002313 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLKLSDELLAKPQP 83
           HFN+VLLAV++L DELL KPQP
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQP 148

[Close]

BLAST of PI0002313 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 68/98 (69.39%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLKLSDELLAKPQP----------KWVHRC 89
           HFN+VLLAV++L +ELL KPQP          KW   C
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENC 164

[Close]

BLAST of PI0002313 vs. ExPASy TrEMBL
Match: A0A5A7USI0 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3803G00010 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.7e-30
Identity = 65/82 (79.27%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
          MDRRCFAILCHLL+T  GL STE++DVEEM+AMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 1  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMIAMFLHILAHDVKNRVIQREFMRSGETISR 60

Query: 61 HFNLVLLAVLKLSDELLAKPQP 83
          HFN+VLLAV++L DELL KPQP
Sbjct: 61 HFNMVLLAVIRLHDELLKKPQP 82

[Close]

BLAST of PI0002313 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.7e-30
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
          MDRRCFAILCHLL+T+ GL  TE+IDVEEMVAMFLH+LAHDVKNR+IQ EF  SGETVSR
Sbjct: 1  MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61 HFNLVLLAVLKLSDELLAKPQP----------KWVHRC 89
          HFN+VLLA+L+L DELL KPQP          KW   C
Sbjct: 61 HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENC 98

[Close]

BLAST of PI0002313 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 9.0e-30
Identity = 68/98 (69.39%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLKLSDELLAKPQP----------KWVHRC 89
           HFN+VLLAV++L +ELL KPQP          KW   C
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENC 164

[Close]

BLAST of PI0002313 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 9.0e-30
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLKLSDELLAKPQP 83
           HFN+VLLAV++L DELL KPQP
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQP 148

[Close]

BLAST of PI0002313 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 9.0e-30
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           MDRRCFAILCHLL+T  GL STE++DVEEMVAMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNLVLLAVLKLSDELLAKPQP 83
           HFN+VLLAV++L DELL KPQP
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQP 148

[Close]

BLAST of PI0002313 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
          MDRRCFAILCHLL+T+ GL  TE+IDVEEMVAMFLH+LAHDVKNR+IQ EF  SGETVSR
Sbjct: 1  MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61 HFNLVLLAVLKLSDELLAKPQP----------KWVHRC 89
          HFN+VLLA+L+L DELL KPQP          KW   C
Sbjct: 61 HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENC 98

[Close]

BLAST of PI0002313 vs. NCBI nr
Match: KAA0057637.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 65/82 (79.27%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
          MDRRCFAILCHLL+T  GL STE++DVEEM+AMFLH+LAHDVKNRVIQ EF+ SGET+SR
Sbjct: 1  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMIAMFLHILAHDVKNRVIQREFMRSGETISR 60

Query: 61 HFNLVLLAVLKLSDELLAKPQP 83
          HFN+VLLAV++L DELL KPQP
Sbjct: 61 HFNMVLLAVIRLHDELLKKPQP 82

[Close]

BLAST of PI0002313 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           MD+  F  LC LLQT   L+ T  I +E  +A+FL ++ H+++ R +Q  F +SGET+SR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNLVLLAVLKLSDE 76
           HFN VL AV+ +S +
Sbjct: 108 HFNNVLNAVIAISKD 122

[Close]

BLAST of PI0002313 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-09
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           M   CF  LC++LQTN  LQ T  I +EE VAMFL +  H+   R +   F  + ETV R
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 61  HFNLVLLAVLKLSDELLAKPQPKWVHR 88
            F  VL A   L+ + +  P  + ++R
Sbjct: 132 KFREVLTATELLACDYIRTPTRQELYR 158

[Close]

BLAST of PI0002313 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 6.3e-05
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 1   MDRRCFAILCHLLQTNTGLQSTEIIDVEEMVAMFLHVLAHDVKNRVIQHEFLWSGETVSR 60
           M    F  LC +L    GLQS+  I ++E VA+FL + A +   R I   F  + ET+ R
Sbjct: 30  MSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWR 89

Query: 61  HFNLVLLAVLKLSDELL 78
            F+ VL A+ +L+ E +
Sbjct: 90  KFHDVLKAMERLAVEYI 106

The following BLAST results are available for this feature:

BLAST of PI0002313 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002313 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	4.4e-30	80.49	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWD8	4.4e-30	80.49	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U476	4.4e-30	69.39	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7USI0	5.7e-30	79.27	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3CDG6	5.7e-30	70.41	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0002313 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048361.1	9.0e-30	69.39	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046727.1	9.0e-30	80.49	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0034843.1	9.0e-30	80.49	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008441953.1	1.2e-29	70.41	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]
KAA0057637.1	1.2e-29	79.27	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0002313 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.1e-12	45.33	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	5.5e-09	39.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	6.3e-05	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..83
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002313.1	PI0002313.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding