PI0002284 (gene) Melon (PI 482460) v1

Overview


Name	PI0002284
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr09: 11227475 .. 11228305 (-)
RNA-Seq Expression	PI0002284
Synteny	PI0002284

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGTAACACCAACGGGAAGTATCAGCTTTATCCGCATCAGCTAACCACAGAGGCAAGCATGTGGCTATTTTTCATCAAGAAGAAGATCTTCCCAACGCGCCGTGATAGCACCATTAACTTAGAGTCAGCGATGCTACTCTATTGTATAATGGCGAAGAAGCGCGTCAACCTTGGCGAGCTTATAGCCACATCCATTCTGTCGTGGATGCGAGCTCCTAAAGGCGCCATGCCCTTTCCTTCCACCATTGAAGCCCTTTGCGTTAAGGTTGTGCCATTCCTATGCGCCATCCAAGCAATTCCAATACCAAGCGGGCTGTGTAACCAGATGGCTTTAAACCGCATGATCACTTTCCATAGACACAAAGAAATGGAAAGGCGGGCAAAGACTTTGGACGACACACCTGAAGGCACGGCCCAAGCAGAACGCAAAAGGAAGTCCCCAGCCGCCACATCAAACCCCCCACCTAAAGTCAAAAAATCAAGAGTTGATGTGGCGAAGCAGCCACCACCACTGAAGATCATCCACCCCTCATCTCGCCCAATCAAGCGAGCTCCCCCACCAGTCCAAAGCAAATCCAGCAACTCTCAACCTTCACGCCCTTCTTCGCTCATTCCACCCACACCACCTTCGCCAATTCCCTCTCCCCGCCATTCACCTCTCCCCCACATTCTTTCCCCCATCAACATCCCTAACCTTTCCCCCACGACCACCTACCCCTCCGCCAAAAAAATCCAATTCCTCACCCTTCCCGATTTTGCCTTAAATTTTGCCTTACCCATGAATGATTGCATGATTGAAATCATGAATGCTTGCTTAAATGTTTGA

mRNA sequence

ATGGGAAGTAACACCAACGGGAAGTATCAGCTTTATCCGCATCAGCTAACCACAGAGGCAAGCATGTGGCTATTTTTCATCAAGAAGAAGATCTTCCCAACGCGCCGTGATAGCACCATTAACTTAGAGTCAGCGATGCTACTCTATTGTATAATGGCGAAGAAGCGCGTCAACCTTGGCGAGCTTATAGCCACATCCATTCTGTCGTGGATGCGAGCTCCTAAAGGCGCCATGCCCTTTCCTTCCACCATTGAAGCCCTTTGCGTTAAGGTTGTGCCATTCCTATGCGCCATCCAAGCAATTCCAATACCAAGCGGGCTGTGTAACCAGATGGCTTTAAACCGCATGATCACTTTCCATAGACACAAAGAAATGGAAAGGCGGGCAAAGACTTTGGACGACACACCTGAAGGCACGGCCCAAGCAGAACGCAAAAGGAAGTCCCCAGCCGCCACATCAAACCCCCCACCTAAAGTCAAAAAATCAAGAGTTGATGTGGCGAAGCAGCCACCACCACTGAAGATCATCCACCCCTCATCTCGCCCAATCAAGCGAGCTCCCCCACCAGTCCAAAGCAAATCCAGCAACTCTCAACCTTCACGCCCTTCTTCGCTCATTCCACCCACACCACCTTCGCCAATTCCCTCTCCCCGCCATTCACCTCTCCCCCACATTCTTTCCCCCATCAACATCCCTAACCTTTCCCCCACGACCACCTACCCCTCCGCCAAAAAAATCCAATTCCTCACCCTTCCCGATTTTGCCTTAAATTTTGCCTTACCCATGAATGATTGCATGATTGAAATCATGAATGCTTGCTTAAATGTTTGA

Coding sequence (CDS)

ATGGGAAGTAACACCAACGGGAAGTATCAGCTTTATCCGCATCAGCTAACCACAGAGGCAAGCATGTGGCTATTTTTCATCAAGAAGAAGATCTTCCCAACGCGCCGTGATAGCACCATTAACTTAGAGTCAGCGATGCTACTCTATTGTATAATGGCGAAGAAGCGCGTCAACCTTGGCGAGCTTATAGCCACATCCATTCTGTCGTGGATGCGAGCTCCTAAAGGCGCCATGCCCTTTCCTTCCACCATTGAAGCCCTTTGCGTTAAGGTTGTGCCATTCCTATGCGCCATCCAAGCAATTCCAATACCAAGCGGGCTGTGTAACCAGATGGCTTTAAACCGCATGATCACTTTCCATAGACACAAAGAAATGGAAAGGCGGGCAAAGACTTTGGACGACACACCTGAAGGCACGGCCCAAGCAGAACGCAAAAGGAAGTCCCCAGCCGCCACATCAAACCCCCCACCTAAAGTCAAAAAATCAAGAGTTGATGTGGCGAAGCAGCCACCACCACTGAAGATCATCCACCCCTCATCTCGCCCAATCAAGCGAGCTCCCCCACCAGTCCAAAGCAAATCCAGCAACTCTCAACCTTCACGCCCTTCTTCGCTCATTCCACCCACACCACCTTCGCCAATTCCCTCTCCCCGCCATTCACCTCTCCCCCACATTCTTTCCCCCATCAACATCCCTAACCTTTCCCCCACGACCACCTACCCCTCCGCCAAAAAAATCCAATTCCTCACCCTTCCCGATTTTGCCTTAAATTTTGCCTTACCCATGAATGATTGCATGATTGAAATCATGAATGCTTGCTTAAATGTTTGA

Protein sequence

MGSNTNGKYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGELIATSILSWMRAPKGAMPFPSTIEALCVKVVPFLCAIQAIPIPSGLCNQMALNRMITFHRHKEMERRAKTLDDTPEGTAQAERKRKSPAATSNPPPKVKKSRVDVAKQPPPLKIIHPSSRPIKRAPPPVQSKSSNSQPSRPSSLIPPTPPSPIPSPRHSPLPHILSPINIPNLSPTTTYPSAKKIQFLTLPDFALNFALPMNDCMIEIMNACLNV

Homology

[Close]

BLAST of PI0002284 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.6e-22
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 8   KYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGELIATSI 67
           +YQLYPH LTT+A++W+FF K KIFPT  DSTI+++  ++LYCIM KK +NL E+I  +I
Sbjct: 85  RYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILYCIMIKKAINLDEIIKAAI 144

Query: 68  LSWMRAPKGAMPFPSTIEALCVKVVPFLCAIQAIPIPS 106
           L+WM  PK AMPFPS +E LC+K +P L       IPS
Sbjct: 145 LTWMEIPKEAMPFPSLMEKLCLKFLPSLVRYPEKNIPS 181

[Close]

BLAST of PI0002284 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 3    SNTNGKYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGEL 62
            S    + QL+PHQLT EA++WLFFIKKKIFPT  DSTI  E A++LYCI AKK  NLG +
Sbjct: 1282 STPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYV 1341

Query: 63   IATSILSWMRAPKGAMPFPSTIEALCVK 91
            +  + LSWMR PK A PFP+T++ LC+K
Sbjct: 1342 MNEAFLSWMRNPKNAKPFPTTVKKLCLK 1369

[Close]

BLAST of PI0002284 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 3   SNTNGKYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGEL 62
           S    + QL+PHQLT EA++WLFFIKKKIFPT  DSTI  E A++LYCI AKK  NLG +
Sbjct: 121 STPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYV 180

Query: 63  IATSILSWMRAPKGAMPFPSTIEALCVK 91
           +  + LSWMR PK A PFP+T++ LC+K
Sbjct: 181 MNEAFLSWMRNPKNAKPFPTTVKKLCLK 208

[Close]

BLAST of PI0002284 vs. ExPASy TrEMBL
Match: A0A5A7U4J2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46449G00010 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-18
Identity = 62/130 (47.69%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 34  TRRDSTINLESAMLLYCIMAKKRVNLGELIATSILSWMRAPKGAMPFPSTIEALCVKVVP 93
           TR D+TI L  AM++YCI  K  VNLG +I  SILS M+APK  MPFP TI+ALC+K VP
Sbjct: 3   TRHDNTIPLRYAMMIYCIKKKIVVNLGAIIKNSILSSMKAPKDIMPFPFTIKALCLKEVP 62

Query: 94  FLCAIQAIPIPSGLCNQMALNRMITFHRHKEMERRAKTLDDTPEGTAQAERKRKSPAATS 153
            L      PI S +C+Q+ LN+ IT H++KE +R  KTL+       + E K  SP    
Sbjct: 63  ELSTFSQAPIFSFVCSQVTLNQTITLHQNKEEQRCLKTLN-----KVKGEEKEASP---- 122

Query: 154 NPPPKVKKSR 164
            PPP +K+ +
Sbjct: 123 -PPPPLKRKK 122

[Close]

BLAST of PI0002284 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 8   KYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGELIATSI 67
           KY+L+ H LTTEAS+WL FIKKK+ PTR D+TI+ E  MLLYCIM +  V++ E+I   I
Sbjct: 187 KYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIMLLYCIMEEIPVDVDEIICDHI 246

Query: 68  LSWMRAPKGAMPFPSTIEALCVKVVPFL-CAIQAIPIPSGLCN 110
            +W++ P+GA PFP  IE LC++    L  + Q   +  G+CN
Sbjct: 247 KAWVQHPRGAKPFPHLIERLCLRSCSELEQSPQIACVQDGMCN 289

[Close]

BLAST of PI0002284 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-21
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 8   KYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGELIATSI 67
           +YQLYPH LTT+A++W+FF K KIFPT  DSTI+++  ++LYCIM KK +NL E+I  +I
Sbjct: 85  RYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILYCIMIKKAINLDEIIKAAI 144

Query: 68  LSWMRAPKGAMPFPSTIEALCVKVVPFLCAIQAIPIPS 106
           L+WM  PK AMPFPS +E LC+K +P L       IPS
Sbjct: 145 LTWMEIPKEAMPFPSLMEKLCLKFLPSLVRYPEKNIPS 181

[Close]

BLAST of PI0002284 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-21
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 3    SNTNGKYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGEL 62
            S    + QL+PHQLT EA++WLFFIKKKIFPT  DSTI  E A++LYCI AKK  NLG +
Sbjct: 1282 STPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYV 1341

Query: 63   IATSILSWMRAPKGAMPFPSTIEALCVK 91
            +  + LSWMR PK A PFP+T++ LC+K
Sbjct: 1342 MNEAFLSWMRNPKNAKPFPTTVKKLCLK 1369

[Close]

BLAST of PI0002284 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-21
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 3   SNTNGKYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGEL 62
           S    + QL+PHQLT EA++WLFFIKKKIFPT  DSTI  E A++LYCI AKK  NLG +
Sbjct: 121 STPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYV 180

Query: 63  IATSILSWMRAPKGAMPFPSTIEALCVK 91
           +  + LSWMR PK A PFP+T++ LC+K
Sbjct: 181 MNEAFLSWMRNPKNAKPFPTTVKKLCLK 208

[Close]

BLAST of PI0002284 vs. NCBI nr
Match: KAA0050752.1 (hypothetical protein E6C27_scaffold46449G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-18
Identity = 62/130 (47.69%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 34  TRRDSTINLESAMLLYCIMAKKRVNLGELIATSILSWMRAPKGAMPFPSTIEALCVKVVP 93
           TR D+TI L  AM++YCI  K  VNLG +I  SILS M+APK  MPFP TI+ALC+K VP
Sbjct: 3   TRHDNTIPLRYAMMIYCIKKKIVVNLGAIIKNSILSSMKAPKDIMPFPFTIKALCLKEVP 62

Query: 94  FLCAIQAIPIPSGLCNQMALNRMITFHRHKEMERRAKTLDDTPEGTAQAERKRKSPAATS 153
            L      PI S +C+Q+ LN+ IT H++KE +R  KTL+       + E K  SP    
Sbjct: 63  ELSTFSQAPIFSFVCSQVTLNQTITLHQNKEEQRCLKTLN-----KVKGEEKEASP---- 122

Query: 154 NPPPKVKKSR 164
            PPP +K+ +
Sbjct: 123 -PPPPLKRKK 122

[Close]

BLAST of PI0002284 vs. NCBI nr
Match: KAA0054837.1 (hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK27771.1 hypothetical protein E5676_scaffold1142G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 6.2e-18
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 8   KYQLYPHQLTTEASMWLFFIKKKIFPTRRDSTINLESAMLLYCIMAKKRVNLGELIATSI 67
           KY+L+ H LTTEAS+WL FIKKK+ PTR D+TI+ E  MLLYCIM +  V++ E+I   I
Sbjct: 187 KYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIMLLYCIMEEIPVDVDEIICDHI 246

Query: 68  LSWMRAPKGAMPFPSTIEALCVKVVPFL-CAIQAIPIPSGLCN 110
            +W++ P+GA PFP  IE LC++    L  + Q   +  G+CN
Sbjct: 247 KAWVQHPRGAKPFPHLIERLCLRSCSELEQSPQIACVQDGMCN 289

The following BLAST results are available for this feature:

BLAST of PI0002284 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002284 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M5	7.6e-22	56.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5A7U806	1.7e-21	60.23	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	1.7e-21	60.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4J2	2.3e-18	47.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DVQ6	3.0e-18	49.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0002284 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062900.1	1.6e-21	56.12	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049609.1	3.5e-21	60.23	transposase [Cucumis melo var. makuwa]	[more]
TYK15967.1	3.5e-21	60.23	hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]	[more]
KAA0050752.1	4.7e-18	47.69	hypothetical protein E6C27_scaffold46449G00010 [Cucumis melo var. makuwa]	[more]
KAA0054837.1	6.2e-18	49.51	hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK2777...	[more]

BLAST of PI0002284 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002284.1	PI0002284.1	mRNA