PI0001999 (gene) Melon (PI 482460) v1

Overview


Name	PI0001999
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr08: 6369046 .. 6369664 (-)
RNA-Seq Expression	PI0001999
Synteny	PI0001999

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATGTTTTGGCAAAGAAATATGAATCCTTAGCCATGACTAAACAGATTATGGATTCATTGAGCGAGATGTCTGGTCAGCCTTTATGGTCCCTCAGATACGAAGTAATTAAGCATATTTATACCAAGCGAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACTTCAATATCGCTGAAGTAAATGGCAGTCCCATCGATGAGGCAAATCAGGTGAGCTTTATTTCACAATCTTTTTCGAAGAGTTTTGTACCATTTCAGACGAACGCGTCTCTAAATAAAATAGAGTTCACTTTGACCACCCTTCTAAATGAGCTCCAGATATTCCAGAACTTTACTATAGGTAAAGGGAAGGAAGTGGAAGAAAATGTTGCTACCATAGAGAAAGAGTTTATAAGAGGATCGTCCTCTAAAACTAAAGTTGGACCTTCACAAATGAAAAAGAAAGGGAAGACTCCCAAGAGTAGTAAGGGAAAGAAAGTTGTGAAAGGTAAATGTTACCATTGCAACCAAAACGAGCATTGGTTAAGGAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTAAGAAGGAAGCACAAGGTAAATATGATTTACTAG

mRNA sequence

ATGTTTGATGTTTTGGCAAAGAAATATGAATCCTTAGCCATGACTAAACAGATTATGGATTCATTGAGCGAGATGTCTGGTCAGCCTTTATGGTCCCTCAGATACGAAGTAATTAAGCATATTTATACCAAGCGAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACTTCAATATCGCTGAAGTAAATGGCAGTCCCATCGATGAGGCAAATCAGACGAACGCGTCTCTAAATAAAATAGAGTTCACTTTGACCACCCTTCTAAATGAGCTCCAGATATTCCAGAACTTTACTATAGGTAAAGGGAAGGAAGTGGAAGAAAATGTTGCTACCATAGAGAAAGAGTTTATAAGAGGATCGTCCTCTAAAACTAAAGTTGGACCTTCACAAATGAAAAAGAAAGGGAAGACTCCCAAGAGTAGTAAGGGAAAGAAAGTTGTGAAAGGAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTAAGAAGGAAGCACAAGGTAAATATGATTTACTAG

Coding sequence (CDS)

ATGTTTGATGTTTTGGCAAAGAAATATGAATCCTTAGCCATGACTAAACAGATTATGGATTCATTGAGCGAGATGTCTGGTCAGCCTTTATGGTCCCTCAGATACGAAGTAATTAAGCATATTTATACCAAGCGAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACTTCAATATCGCTGAAGTAAATGGCAGTCCCATCGATGAGGCAAATCAGACGAACGCGTCTCTAAATAAAATAGAGTTCACTTTGACCACCCTTCTAAATGAGCTCCAGATATTCCAGAACTTTACTATAGGTAAAGGGAAGGAAGTGGAAGAAAATGTTGCTACCATAGAGAAAGAGTTTATAAGAGGATCGTCCTCTAAAACTAAAGTTGGACCTTCACAAATGAAAAAGAAAGGGAAGACTCCCAAGAGTAGTAAGGGAAAGAAAGTTGTGAAAGGAATTGCCCAAAGTACCTTGCTGAGAAGAAAGCTAAGAAGGAAGCACAAGGTAAATATGATTTACTAG

Protein sequence

MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGSPIDEANQTNASLNKIEFTLTTLLNELQIFQNFTIGKGKEVEENVATIEKEFIRGSSSKTKVGPSQMKKKGKTPKSSKGKKVVKGIAQSTLLRRKLRRKHKVNMIY

Homology

[Close]

BLAST of PI0001999 vs. ExPASy TrEMBL
Match: A0A5D3CSI7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00060 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKK+ESLAM K+IMDSL EM GQP WSLR+E IK+IYTK+MKEGTSVREHV+DM+
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVVDMI 60

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           +HFNIA+VNGSPI+EAN                QTN SL+KIEFTLTTLLNELQ FQN T
Sbjct: 61  VHFNIAKVNGSPINEANQVSFILKSLSKSFVPFQTNVSLSKIEFTLTTLLNELQRFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQM--KKKGKTPKSSKGKKVVKG 156
           IGKGKEVE NVATIEK+ +RGSSSK++VGPS M  K+KGKTPK+SKGKKV KG
Sbjct: 121 IGKGKEVEANVATIEKKLLRGSSSKSRVGPSLMKNKRKGKTPKNSKGKKVAKG 173

[Close]

BLAST of PI0001999 vs. ExPASy TrEMBL
Match: A0A5D3C8J9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00080 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.1e-53
Identity = 125/173 (72.25%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKK+ESLAM K+IMDSL EM GQ  WSLR++ IK+IYTK+MKEGTSVREHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLMEMFGQSSWSLRHKAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAEVNGSPIDEANQT----------------NASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNIAEVNG PI+EANQ                 NASLNKI+FTLTTLLNELQ FQN T
Sbjct: 61  MHFNIAEVNGGPINEANQVSFILQSLLKSFVPFQRNASLNKIKFTLTTLLNELQQFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQMKK--KGKTPKSSKGKKVVKG 156
           + KGKEVE NVAT EK+ + GSSSKTKVGPS MKK  KGKTPK+SK KKVVKG
Sbjct: 121 MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG 173

[Close]

BLAST of PI0001999 vs. ExPASy TrEMBL
Match: A0A5A7V810 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002410 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.9e-52
Identity = 123/177 (69.49%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKKYE LA TK+IMDSL EM GQP WSLR+E IK+IYTK+MKEGTSVREHVLDMM
Sbjct: 1   MSDVLAKKYEFLATTKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNI EVN  PI+EAN                QTNASLNKIEFTLTTLLNELQ FQN T
Sbjct: 61  MHFNIVEVNSGPINEANQVSFILQSLPKNFVLLQTNASLNKIEFTLTTLLNELQRFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQMKK--KGKTPKSSKGKKVVKGIAQS 160
           +GKGKEVE NVAT EKE + GSS KT+V    MKK  KGK+PK+S+ KKVVKG   S
Sbjct: 121 MGKGKEVEANVATTEKELLGGSSFKTRVRTLNMKKKRKGKSPKNSEEKKVVKGEGSS 177

[Close]

BLAST of PI0001999 vs. ExPASy TrEMBL
Match: A0A5D3DUD1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00010 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.0e-51
Identity = 122/173 (70.52%), Postives = 133/173 (76.88%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKKYE LA TK+IMDSL EM GQP WSLR+E IK+IYTK+MKEGTSVREHVLDMM
Sbjct: 1   MSDVLAKKYEFLATTKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNI EVN  PI+EAN                QTNASLNKIEFTLTTLLNELQ FQN T
Sbjct: 61  MHFNIVEVNSGPINEANQVSFILQSLPKNFVLLQTNASLNKIEFTLTTLLNELQRFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQMKK--KGKTPKSSKGKKVVKG 156
           +GKGKEVE NVAT EKE + GSS KT+V    MKK  KGK+PK+S+ KKVVKG
Sbjct: 121 MGKGKEVEANVATTEKELLGGSSFKTRVRTLNMKKKRKGKSPKNSEEKKVVKG 173

[Close]

BLAST of PI0001999 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.7e-51
Identity = 122/171 (71.35%), Postives = 131/171 (76.61%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKK++S+A  K IMDSL EM GQP WSLR+E IKHIYTKRMKEGTSVREHVLDMM
Sbjct: 77  MTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMM 136

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNIAEVNG PIDEAN                QTNASLNKIEF LTTLLNELQ FQN T
Sbjct: 137 MHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLT 196

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPS--QMKK--KGKTPKSSKGKK 152
           + KGKEVE NVA  +++FIRGSSSK KVGPS  QMKK  KGK P +SK KK
Sbjct: 197 LSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVKK 247

[Close]

BLAST of PI0001999 vs. NCBI nr
Match: KAA0032130.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14372.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-55
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKK+ESLAM K+IMDSL EM GQP WSLR+E IK+IYTK+MKEGTSVREHV+DM+
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVVDMI 60

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           +HFNIA+VNGSPI+EAN                QTN SL+KIEFTLTTLLNELQ FQN T
Sbjct: 61  VHFNIAKVNGSPINEANQVSFILKSLSKSFVPFQTNVSLSKIEFTLTTLLNELQRFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQM--KKKGKTPKSSKGKKVVKG 156
           IGKGKEVE NVATIEK+ +RGSSSK++VGPS M  K+KGKTPK+SKGKKV KG
Sbjct: 121 IGKGKEVEANVATIEKKLLRGSSSKSRVGPSLMKNKRKGKTPKNSKGKKVAKG 173

[Close]

BLAST of PI0001999 vs. NCBI nr
Match: KAA0035261.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07574.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-53
Identity = 125/173 (72.25%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKK+ESLAM K+IMDSL EM GQ  WSLR++ IK+IYTK+MKEGTSVREHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLMEMFGQSSWSLRHKAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAEVNGSPIDEANQT----------------NASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNIAEVNG PI+EANQ                 NASLNKI+FTLTTLLNELQ FQN T
Sbjct: 61  MHFNIAEVNGGPINEANQVSFILQSLLKSFVPFQRNASLNKIKFTLTTLLNELQQFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQMKK--KGKTPKSSKGKKVVKG 156
           + KGKEVE NVAT EK+ + GSSSKTKVGPS MKK  KGKTPK+SK KKVVKG
Sbjct: 121 MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKG 173

[Close]

BLAST of PI0001999 vs. NCBI nr
Match: KAA0063718.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-51
Identity = 123/177 (69.49%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKKYE LA TK+IMDSL EM GQP WSLR+E IK+IYTK+MKEGTSVREHVLDMM
Sbjct: 1   MSDVLAKKYEFLATTKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNI EVN  PI+EAN                QTNASLNKIEFTLTTLLNELQ FQN T
Sbjct: 61  MHFNIVEVNSGPINEANQVSFILQSLPKNFVLLQTNASLNKIEFTLTTLLNELQRFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQMKK--KGKTPKSSKGKKVVKGIAQS 160
           +GKGKEVE NVAT EKE + GSS KT+V    MKK  KGK+PK+S+ KKVVKG   S
Sbjct: 121 MGKGKEVEANVATTEKELLGGSSFKTRVRTLNMKKKRKGKSPKNSEEKKVVKGEGSS 177

[Close]

BLAST of PI0001999 vs. NCBI nr
Match: TYK27112.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-51
Identity = 122/173 (70.52%), Postives = 133/173 (76.88%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKKYE LA TK+IMDSL EM GQP WSLR+E IK+IYTK+MKEGTSVREHVLDMM
Sbjct: 1   MSDVLAKKYEFLATTKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNI EVN  PI+EAN                QTNASLNKIEFTLTTLLNELQ FQN T
Sbjct: 61  MHFNIVEVNSGPINEANQVSFILQSLPKNFVLLQTNASLNKIEFTLTTLLNELQRFQNLT 120

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPSQMKK--KGKTPKSSKGKKVVKG 156
           +GKGKEVE NVAT EKE + GSS KT+V    MKK  KGK+PK+S+ KKVVKG
Sbjct: 121 MGKGKEVEANVATTEKELLGGSSFKTRVRTLNMKKKRKGKSPKNSEEKKVVKG 173

[Close]

BLAST of PI0001999 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-51
Identity = 122/171 (71.35%), Postives = 131/171 (76.61%), Query Frame = 0


Query: 1   MFDVLAKKYESLAMTKQIMDSLSEMSGQPLWSLRYEVIKHIYTKRMKEGTSVREHVLDMM 60
           M DVLAKK++S+A  K IMDSL EM GQP WSLR+E IKHIYTKRMKEGTSVREHVLDMM
Sbjct: 77  MTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMM 136

Query: 61  MHFNIAEVNGSPIDEAN----------------QTNASLNKIEFTLTTLLNELQIFQNFT 120
           MHFNIAEVNG PIDEAN                QTNASLNKIEF LTTLLNELQ FQN T
Sbjct: 137 MHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLT 196

Query: 121 IGKGKEVEENVATIEKEFIRGSSSKTKVGPS--QMKK--KGKTPKSSKGKK 152
           + KGKEVE NVA  +++FIRGSSSK KVGPS  QMKK  KGK P +SK KK
Sbjct: 197 LSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVKK 247

The following BLAST results are available for this feature:

BLAST of PI0001999 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001999 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSI7	1.1e-55	72.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G0006...	[more]
A0A5D3C8J9	1.1e-53	72.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G0008...	[more]
A0A5A7V810	5.9e-52	69.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32...	[more]
A0A5D3DUD1	1.0e-51	70.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G0001...	[more]
E2GK51	1.7e-51	71.35	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]

BLAST of PI0001999 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032130.1	2.4e-55	72.25	gag/pol protein [Cucumis melo var. makuwa] >TYK14372.1 gag/pol protein [Cucumis ...	[more]
KAA0035261.1	2.2e-53	72.25	gag/pol protein [Cucumis melo var. makuwa] >TYK07574.1 gag/pol protein [Cucumis ...	[more]
KAA0063718.1	1.2e-51	69.49	pol protein [Cucumis melo var. makuwa]	[more]
TYK27112.1	2.1e-51	70.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	3.5e-51	71.35	gag/pol protein, partial [Bryonia dioica]	[more]

BLAST of PI0001999 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..152
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..159
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001999.1	PI0001999.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008270	zinc ion binding