PI0001981 (gene) Melon (PI 482460) v1

Overview


Name	PI0001981
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWIM-type domain-containing protein
Location	chr06: 16699595 .. 16700346 (-)
RNA-Seq Expression	PI0001981
Synteny	PI0001981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTTGTGGGATTTCAATGCTACATGAATGGAAATATTATTAACGGGTCATCTGGTATTGAATATGACGTTCAACCATGTTTGGACATAAATGTTCTCCGTCAAATTGAATTCAACCAATTTATTGAGGCATTATGTGATGCTTTGTCTATAGACAGAAATAATGGGGTAGAGATAATATTTAGGTATGGTAGTTACATGGCGGGGTCCACATTCTACATTCCCATCTCTTTACTTAGTGAACCTGACTTAAGGTTTATGATGAGCAATGCTCCACCCCTTCCACATACAGTGGAACTTTATATTTCTCAACCAAATTTGCCCAATTCACCTCGAATGATTGAAAATATCAACGAGTTTGAAACTTGTAATGAGGAAGATGATTGTTCCGACCCGACTATGGCTACAAATGCAGAGGAGGTTGAAGTAGACGATGATGGTAGTGATCTAGATGATAACTCGTATAAATACAAGTTATTATAGTCTTTTAGGCGAAACAATAAGGTTAAAACGCGGAATAAATGGTCTTAACGCCTAGTTTGCAGTGCGAATCTGTAATTATTTAAGAATGAGCTTCGCATAAGTCATTAAGCGTGATTAACTATGTTTTCAAGTATTTTTGCACGCAGGAAGGCGAAAAGAGGAAAAGTAGGCGAACCACGTTACATCTAGACATCAAGAAGAGCATCTTGCGAGCTAAAGCCAAAGACATGCTGCCAACACAACACTATGCGACGATGACTCGCTAA

mRNA sequence

ATGGACGTTGTGGGATTTCAATGCTACATGAATGGAAATATTATTAACGGGTCATCTGGTATTGAATATGACGTTCAACCATGTTTGGACATAAATGTTCTCCGTCAAATTGAATTCAACCAATTTATTGAGGCATTATGTGATGCTTTGTCTATAGACAGAAATAATGGGGTAGAGATAATATTTAGGTATGGTAGTTACATGGCGGGGTCCACATTCTACATTCCCATCTCTTTACTTAGTGAACCTGACTTAAGGTTTATGATGAGCAATGCTCCACCCCTTCCACATACAGTGGAACTTTATATTTCTCAACCAAATTTGCCCAATTCACCTCGAATGATTGAAAATATCAACGAGTTTGAAACTTGTAATGAGGAAGATGATTGTTCCGACCCGACTATGGCTACAAATGCAGAGGAGGTTGAAGTAGACGATGATGGTAGTGATCTAGATGATAACTCGTATAAATACAAGCGAAACAATAAGGAAGGCGAAAAGAGGAAAAGTAGGCGAACCACGTTACATCTAGACATCAAGAAGAGCATCTTGCGAGCTAAAGCCAAAGACATGCTGCCAACACAACACTATGCGACGATGACTCGCTAA

Coding sequence (CDS)

ATGGACGTTGTGGGATTTCAATGCTACATGAATGGAAATATTATTAACGGGTCATCTGGTATTGAATATGACGTTCAACCATGTTTGGACATAAATGTTCTCCGTCAAATTGAATTCAACCAATTTATTGAGGCATTATGTGATGCTTTGTCTATAGACAGAAATAATGGGGTAGAGATAATATTTAGGTATGGTAGTTACATGGCGGGGTCCACATTCTACATTCCCATCTCTTTACTTAGTGAACCTGACTTAAGGTTTATGATGAGCAATGCTCCACCCCTTCCACATACAGTGGAACTTTATATTTCTCAACCAAATTTGCCCAATTCACCTCGAATGATTGAAAATATCAACGAGTTTGAAACTTGTAATGAGGAAGATGATTGTTCCGACCCGACTATGGCTACAAATGCAGAGGAGGTTGAAGTAGACGATGATGGTAGTGATCTAGATGATAACTCGTATAAATACAAGCGAAACAATAAGGAAGGCGAAAAGAGGAAAAGTAGGCGAACCACGTTACATCTAGACATCAAGAAGAGCATCTTGCGAGCTAAAGCCAAAGACATGCTGCCAACACAACACTATGCGACGATGACTCGCTAA

Protein sequence

MDVVGFQCYMNGNIINGSSGIEYDVQPCLDINVLRQIEFNQFIEALCDALSIDRNNGVEIIFRYGSYMAGSTFYIPISLLSEPDLRFMMSNAPPLPHTVELYISQPNLPNSPRMIENINEFETCNEEDDCSDPTMATNAEEVEVDDDGSDLDDNSYKYKRNNKEGEKRKSRRTTLHLDIKKSILRAKAKDMLPTQHYATMTR

Homology

[Close]

BLAST of PI0001981 vs. ExPASy TrEMBL
Match: A0A5D3D569 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00410 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 89  MSNAPPLPHTVELYISQPNLPNSPRMIENINEFETCNEED-DCSDPTMATNAEEVEVDDD 148
           MSNAPPLPH VELYISQPNL +S  +IE  NEF+TCN E  DC DPT+ATN E  EVDDD
Sbjct: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD 60

Query: 149 GSDLD 153
            SD+D
Sbjct: 61  DSDID 65

[Close]

BLAST of PI0001981 vs. ExPASy TrEMBL
Match: A0A5A7THR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00980 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = 0


Query: 3   VVGFQCYMNGNIINGSSGIEYDVQPC--LDINVLRQIEFNQFIEALCDALSID-RNNGVE 62
           ++GF  ++NGN+I+GS GI+YD   C    I+V   I F QFIE +  ++ ID R + +E
Sbjct: 5   ILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRISDIE 64

Query: 63  IIFRYGSYM-AGSTFYIPISLLSEPDLRFMMSNAPPLPHTVELYISQPNLPNSPRMIENI 122
           II+R+     +G   ++P  + +E  ++ M S A P+ + V LY++   +     +  N+
Sbjct: 65  IIYRHPDLTPSGLIRFMPFPIPNEQAMKTMFSIAMPISNMVHLYVNVSRV----SLDINL 124

Query: 123 NEFETCNEEDDC---------------SDPTMATNAEEVEVDDDGSDLDDNSYKYKRNNK 182
           N    C  ED                  D  M  N + ++   +  D  D   ++  + +
Sbjct: 125 NSKSFCQLEDRTQVIVPDSELVASLVYDDEEMMANNDNIDFRTEIDDEFDEFEEFDFDGR 184

Query: 183 EGEKRKSRRTTLHLDIKKSI 184
           E E   +  T + +D+  SI
Sbjct: 185 EHELPSNTLTQIDMDVIDSI 200

[Close]

BLAST of PI0001981 vs. ExPASy TrEMBL
Match: A0A438HFK5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-05
Identity = 32/102 (31.37%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 8   CYMNGNIINGSSGIEYDVQPCLDINVLRQIEFNQFIEALCDALSIDRNNG-VEIIFRYGS 67
           CY +G II+G +G+ Y   P   + V   I++++  + LC  +SIDR +  + +IFRY  
Sbjct: 9   CYKDGEIIDGPNGVCYSCPPKKGVLVNNLIKYDELEDKLCHVMSIDRTHTMLSVIFRYPI 68

Query: 68  YMA---GSTFYIPISLLSEPDLRFMMSNAPPLP--HTVELYI 104
            M+   G+  YI + +  + D+R M      +P  +T+E+Y+
Sbjct: 69  LMSIGNGNINYIQLPIKDDDDVRLMFHVVAQIPPSNTIEMYL 110

[Close]

BLAST of PI0001981 vs. ExPASy TrEMBL
Match: A5BXI2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_003261 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 32/102 (31.37%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 8   CYMNGNIINGSSGIEYDVQPCLDINVLRQIEFNQFIEALCDALSIDRNNG-VEIIFRYGS 67
           CY +G II+G +G+ Y   P   + V   I++++  + LC  +SIDR +  + +IFRY  
Sbjct: 9   CYKDGEIIDGPNGVCYSCPPKKGVLVNNLIKYDELEDKLCHVMSIDRTHTMLSMIFRYPI 68

Query: 68  YMA---GSTFYIPISLLSEPDLRFMMSNAPPLP--HTVELYI 104
            M+   G+  YI + +  + D+R M      +P  +T+E+Y+
Sbjct: 69  LMSIGNGNINYIQLPIKDDDDVRLMFHVVAQIPPSNTIEMYL 110

[Close]

BLAST of PI0001981 vs. ExPASy TrEMBL
Match: A5B5G3 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_019818 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-04
Identity = 38/146 (26.03%), Postives = 73/146 (50.00%), Query Frame = 0


Query: 8   CYMNGNIINGSSGIEYDVQPCLDINVLRQIEFNQFIEALCDALSIDRNNG-VEIIFRYGS 67
           CY +G II+G +G+ Y   P   + V   I++++  + LC  +SIDR +  + +IFRY  
Sbjct: 9   CYKDGEIIDGPNGVCYSCPPKKGVLVNNLIKYDELEDKLCHVMSIDRTHTMLSMIFRYPI 68

Query: 68  YMA---GSTFYIPISLLSEPDLRFMMSNAPPLP--HTVELYISQPNLPNSPRMIENINEF 127
            M+   G+  YI + +  + D+R M      +P  +T+E+Y+      +S  +  + +  
Sbjct: 69  LMSIGNGNINYIQLPIKDDDDVRLMFHVVAQIPPSNTIEMYLQTRPRDHSSELSPSFD-- 128

Query: 128 ETCNEEDDCSDPTMATNAEEVEVDDD 148
           +     DD   P    +A +++  D+
Sbjct: 129 QEIMGHDDVEIPAKGNSAVQIDEMDE 152

[Close]

BLAST of PI0001981 vs. NCBI nr
Match: XP_038877923.1 (uncharacterized protein LOC120070133 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 6.7e-38
Identity = 92/160 (57.50%), Postives = 118/160 (73.75%), Query Frame = 0


Query: 1   MDVVGFQCYMNGNIINGSSGIEYDVQPCLDINVLRQIEFNQFIEALCDALSIDRNNGVEI 60
           MDVV F CYM+GNI+NG SGIEYD QP L IN+ RQ +FN  I+   DA SI+R++ VE+
Sbjct: 1   MDVVEFLCYMHGNIVNGPSGIEYDRQPSLRINMHRQDDFNTLIDGFYDAYSINRDDVVEV 60

Query: 61  IFRYGSYMAGSTFYIPISLLSEPDLRFMMSNAPPLPHTVELYISQPNLPNSPRMIENIN- 120
           IFRYGSY+A STF+IPISL S+ D++FMMSNAP  P+ VELYISQP++P+     E +  
Sbjct: 61  IFRYGSYVARSTFHIPISLRSDIDVQFMMSNAPYPPNRVELYISQPSVPSPTSTREEVET 120

Query: 121 -EFETCNEEDDCSDPTMATNAEEVEVDDDGSDLDDNSYKY 159
            E E+   ED+  DPT+ATN EEV++DDD  DLD  S ++
Sbjct: 121 VELESHVVEDEHYDPTIATNDEEVKMDDDDIDLDQLSSQF 160

[Close]

BLAST of PI0001981 vs. NCBI nr
Match: TYK18693.1 (hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 6.8e-14
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 89  MSNAPPLPHTVELYISQPNLPNSPRMIENINEFETCNEED-DCSDPTMATNAEEVEVDDD 148
           MSNAPPLPH VELYISQPNL +S  +IE  NEF+TCN E  DC DPT+ATN E  EVDDD
Sbjct: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD 60

Query: 149 GSDLD 153
            SD+D
Sbjct: 61  DSDID 65

[Close]

BLAST of PI0001981 vs. NCBI nr
Match: KAA0041167.1 (uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 6.8e-06
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = 0


Query: 3   VVGFQCYMNGNIINGSSGIEYDVQPC--LDINVLRQIEFNQFIEALCDALSID-RNNGVE 62
           ++GF  ++NGN+I+GS GI+YD   C    I+V   I F QFIE +  ++ ID R + +E
Sbjct: 5   ILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRISDIE 64

Query: 63  IIFRYGSYM-AGSTFYIPISLLSEPDLRFMMSNAPPLPHTVELYISQPNLPNSPRMIENI 122
           II+R+     +G   ++P  + +E  ++ M S A P+ + V LY++   +     +  N+
Sbjct: 65  IIYRHPDLTPSGLIRFMPFPIPNEQAMKTMFSIAMPISNMVHLYVNVSRV----SLDINL 124

Query: 123 NEFETCNEEDDC---------------SDPTMATNAEEVEVDDDGSDLDDNSYKYKRNNK 182
           N    C  ED                  D  M  N + ++   +  D  D   ++  + +
Sbjct: 125 NSKSFCQLEDRTQVIVPDSELVASLVYDDEEMMANNDNIDFRTEIDDEFDEFEEFDFDGR 184

Query: 183 EGEKRKSRRTTLHLDIKKSI 184
           E E   +  T + +D+  SI
Sbjct: 185 EHELPSNTLTQIDMDVIDSI 200

[Close]

BLAST of PI0001981 vs. NCBI nr
Match: XP_023750776.1 (uncharacterized protein LOC111899128 [Lactuca sativa])

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-05
Identity = 31/86 (36.05%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 4  VGFQCYMNGNIINGSSGIEYDVQPCLDINVLRQIEFNQFIEALCDALSIDRNN-GVEIIF 63
          V F CY +G I +G  GI YD  P   I V R I+FN  +  +  A SID+    +++I 
Sbjct: 6  VTFLCYRDGKIYDGKEGITYDKSPSKAIKVQRGIKFNDLVNQIYFATSIDKQQYHIKVIC 65

Query: 64 RYGSYMAGSTFYIPISLLSEPDLRFM 89
          RY S +     YIP+ +  + D+  M
Sbjct: 66 RYPSVVGKVMKYIPLPIKDDNDVEIM 91

[Close]

BLAST of PI0001981 vs. NCBI nr
Match: XP_023763615.1 (uncharacterized protein LOC111912107 [Lactuca sativa])

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-05
Identity = 31/86 (36.05%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 4  VGFQCYMNGNIINGSSGIEYDVQPCLDINVLRQIEFNQFIEALCDALSIDRNN-GVEIIF 63
          V F CY +G I +G  GI YD  P   I V R I+FN  +  +  A SID+    +++I 
Sbjct: 6  VTFLCYRDGKICDGKEGITYDKSPSKAIKVQRGIKFNDLVNQIYFATSIDKQQYHIKVIC 65

Query: 64 RYGSYMAGSTFYIPISLLSEPDLRFM 89
          RY S +     YIP+ +  + D+  M
Sbjct: 66 RYPSVVGKVMKYIPLPIKDDNDVEIM 91

The following BLAST results are available for this feature:

BLAST of PI0001981 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D569	3.3e-14	70.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7THR5	3.3e-06	27.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A438HFK5	6.2e-05	31.37	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 P...	[more]
A5BXI2	1.1e-04	31.37	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_003261 ...	[more]
A5B5G3	6.9e-04	26.03	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_019818 ...	[more]

BLAST of PI0001981 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877923.1	6.7e-38	57.50	uncharacterized protein LOC120070133 [Benincasa hispida]	[more]
TYK18693.1	6.8e-14	70.77	hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa]	[more]
KAA0041167.1	6.8e-06	27.00	uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]	[more]
XP_023750776.1	7.5e-05	36.05	uncharacterized protein LOC111899128 [Lactuca sativa]	[more]
XP_023763615.1	7.5e-05	36.05	uncharacterized protein LOC111912107 [Lactuca sativa]	[more]

BLAST of PI0001981 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001981.1	PI0001981.1	mRNA