PI0001964 (gene) Melon (PI 482460) v1

Overview
NamePI0001964
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr10: 12727409 .. 12727706 (+)
RNA-Seq ExpressionPI0001964
SyntenyPI0001964
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCGCGAGGAAGGCCGAGGAAAGGCAGGCAAGTAGCAACGGAAGCGCCAGAATCGGATGAAGGTGTCTAATAATCCTCATAACACTATTGGGAAAAACATAGAGGAGACCATGTTTAGTCGCTTTGCTCAGAGAGTAGCAAATCATTTTATGCCTACACATTCTGCGGTAGACAAAAAATTTAGCATTGAGAGGTTGAAGGCAATAGGAGCAACAACTTTTGAAAGGGCCACTGACCTAGCTAAAGCGGAGAAGTGGTTGAGATTGATTGAAAAATATTTTGGGGTGCTCTGA

mRNA sequence

ATGGCACCGCGAGGAAGGCCGAGGAAAGGCAGGCAAGTGTCTAATAATCCTCATAACACTATTGGGAAAAACATAGAGGAGACCATGTTTAGTCGCTTTGCTCAGAGAGTAGCAAATCATTTTATGCCTACACATTCTGCGGTAGACAAAAAATTTAGCATTGAGAGGTTGAAGGCAATAGGAGCAACAACTTTTGAAAGGGCCACTGACCTAGCTAAAGCGGAGAAGTGGTTGAGATTGATTGAAAAATATTTTGGGGTGCTCTGA

Coding sequence (CDS)

ATGGCACCGCGAGGAAGGCCGAGGAAAGGCAGGCAAGTGTCTAATAATCCTCATAACACTATTGGGAAAAACATAGAGGAGACCATGTTTAGTCGCTTTGCTCAGAGAGTAGCAAATCATTTTATGCCTACACATTCTGCGGTAGACAAAAAATTTAGCATTGAGAGGTTGAAGGCAATAGGAGCAACAACTTTTGAAAGGGCCACTGACCTAGCTAAAGCGGAGAAGTGGTTGAGATTGATTGAAAAATATTTTGGGGTGCTCTGA

Protein sequence

MAPRGRPRKGRQVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFERATDLAKAEKWLRLIEKYFGVL
Homology
BLAST of PI0001964 vs. ExPASy TrEMBL
Match: A0A5D3BUF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00680 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.3e-19
Identity = 46/81 (56.79%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 8   RKGRQVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFER 67
           ++  ++SNNP++ I +N E++MF RF QR+ +HFMPT   VDK+F+IERL+A+GATTFE 
Sbjct: 27  QESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHFMPTPFIVDKRFNIERLRALGATTFEE 86

Query: 68  ATDLAKAEKWLRLIEKYFGVL 89
             +LA  +KWL LIEKYFGV+
Sbjct: 87  TKNLADTKKWLNLIEKYFGVM 107

BLAST of PI0001964 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.7e-18
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 6   RPRKGRQVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTF 65
           R +   ++S+NPH+++ +N+EE+MF RFAQR+ +HFMP  S VDK+F IERLKA+GA TF
Sbjct: 45  RAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIERLKALGAMTF 104

Query: 66  ERATDLAKAEKWLRLIEKYFGVL 89
           E  T+LA A K L L+EK FGV+
Sbjct: 105 EGKTNLADANKCLSLVEKCFGVM 127

BLAST of PI0001964 vs. ExPASy TrEMBL
Match: A0A5D3BTQ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00590 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 13 VSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFERATDLA 72
          +S+NPH+ IG+N EE+MF RF+QR+  HF P   AV+K+F IERLKA+GATTFE  T+ A
Sbjct: 1  MSSNPHDPIGQNAEESMFYRFSQRLVAHFTP--YAVNKRFGIERLKALGATTFEGTTNPA 60

Query: 73 KAEKWLRLIEKYFGVL 89
            EKWL LIEKYFGV+
Sbjct: 61 NVEKWLSLIEKYFGVM 74

BLAST of PI0001964 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-15
Identity = 41/77 (53.25%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 12 QVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFERATDL 71
          ++S+NPH+TI +N+EE+MF+RFA+RVA+H +P  S V+K+ +IER+KA+GATTFE     
Sbjct: 21 EMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIERIKALGATTFEGTIGP 80

Query: 72 AKAEKWLRLIEKYFGVL 89
             +KWL L EK F V+
Sbjct: 81 TNVKKWLSLAEKCFQVM 97

BLAST of PI0001964 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.4e-15
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 12 QVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFERATDL 71
          ++S+NPH+TI +N+EE+MF+RFAQRVA+H +P  S V+K+ +IER+KA+GAT FE     
Sbjct: 21 EMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIERIKALGATAFEGTIGP 80

Query: 72 AKAEKWLRLIEKYFGVL 89
             +KWL L EK F V+
Sbjct: 81 TNVKKWLSLAEKCFQVM 97

BLAST of PI0001964 vs. NCBI nr
Match: KAA0039561.1 (hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK01739.1 hypothetical protein E5676_scaffold775G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-19
Identity = 46/81 (56.79%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 8   RKGRQVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFER 67
           ++  ++SNNP++ I +N E++MF RF QR+ +HFMPT   VDK+F+IERL+A+GATTFE 
Sbjct: 27  QESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHFMPTPFIVDKRFNIERLRALGATTFEE 86

Query: 68  ATDLAKAEKWLRLIEKYFGVL 89
             +LA  +KWL LIEKYFGV+
Sbjct: 87  TKNLADTKKWLNLIEKYFGVM 107

BLAST of PI0001964 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 9.8e-18
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 6   RPRKGRQVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTF 65
           R +   ++S+NPH+++ +N+EE+MF RFAQR+ +HFMP  S VDK+F IERLKA+GA TF
Sbjct: 45  RAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIERLKALGAMTF 104

Query: 66  ERATDLAKAEKWLRLIEKYFGVL 89
           E  T+LA A K L L+EK FGV+
Sbjct: 105 EGKTNLADANKCLSLVEKCFGVM 127

BLAST of PI0001964 vs. NCBI nr
Match: KAA0035024.1 (hypothetical protein E6C27_scaffold57G00740 [Cucumis melo var. makuwa] >TYK02358.1 hypothetical protein E5676_scaffold155G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-17
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 13 VSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFERATDLA 72
          +S+NPH+ IG+N EE+MF RF+QR+  HF P   AV+K+F IERLKA+GATTFE  T+ A
Sbjct: 1  MSSNPHDPIGQNAEESMFYRFSQRLVAHFTP--YAVNKRFGIERLKALGATTFEGTTNPA 60

Query: 73 KAEKWLRLIEKYFGVL 89
            EKWL LIEKYFGV+
Sbjct: 61 NVEKWLSLIEKYFGVM 74

BLAST of PI0001964 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 41/77 (53.25%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 12 QVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFERATDL 71
          ++S+NPH+TI +N+EE+MF+RFA+RVA+H +P  S V+K+ +IER+KA+GATTFE     
Sbjct: 21 EMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIERIKALGATTFEGTIGP 80

Query: 72 AKAEKWLRLIEKYFGVL 89
             +KWL L EK F V+
Sbjct: 81 TNVKKWLSLAEKCFQVM 97

BLAST of PI0001964 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 12 QVSNNPHNTIGKNIEETMFSRFAQRVANHFMPTHSAVDKKFSIERLKAIGATTFERATDL 71
          ++S+NPH+TI +N+EE+MF+RFAQRVA+H +P  S V+K+ +IER+KA+GAT FE     
Sbjct: 21 EMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIERIKALGATAFEGTIGP 80

Query: 72 AKAEKWLRLIEKYFGVL 89
             +KWL L EK F V+
Sbjct: 81 TNVKKWLSLAEKCFQVM 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BUF63.3e-1956.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TVM14.7e-1856.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTQ71.8e-1763.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DVY74.9e-1553.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UFQ18.4e-1553.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0039561.16.8e-1956.79hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK0173... [more]
KAA0047014.19.8e-1856.63hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
KAA0035024.13.7e-1763.16hypothetical protein E6C27_scaffold57G00740 [Cucumis melo var. makuwa] >TYK02358... [more]
TYK27664.11.0e-1453.25uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa][more]
KAA0054080.11.7e-1453.25hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0001964.1PI0001964.1mRNA