PI0001930 (gene) Melon (PI 482460) v1

Overview


Name	PI0001930
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr03: 24755201 .. 24755894 (+)
RNA-Seq Expression	PI0001930
Synteny	PI0001930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAAGAAAAAGAAGGAAGGAATCGAGGATCAATTGCTCAAGTTACGAGTTGATTCTACTAGTGGAGGAATTAGTCCCAATAATAGAAGTGAACAAGGACGAGAATGCGAAAGACATCGAGAACGAGGAAGAGGATGAGGAAGTACCAAATCACAATAATTGAGGACAATAAATGGTGAAAAGATTGACAATAATCGAGGACGTAGTTGGAGGCCCAATGAAGACAACAACAATAACTACCAAAGAGGATTGGAAAACTCAACAAGAGGTCATGGACAAGGCAACTCAAGATCAAGGTATGATAAATCAAACATTAAATGTTATAATTCTCAGAAGTTTGGTCATTATGCATCTGAATGTAGAGCTCCTAGAAACGTTAGAGTTGAAGAGAAGACAAACTACATTGAAGATAGAAGTCAAGAATGTGGCACTTTGTTGATAGCTTTGCACAAATAGCGAATGGAGCAAAGTGAATGGAGCAAAGATAAAACATGGTACCTGGACACTGGGGCAAACAATCGTATGTGTGGAGTAAAAATATGTTCATAGAGCTTGATGAATTGGTGAGTGACAATGTAGCATTTGACGATGAATCCAAGGTAGAGGTAAAATGTAGAGGTAACATTCTCATTCGATTAAAGAATGGTGAGCACCAACTTATTTCAAATGTCAATTATGTGCCAAAATGA

mRNA sequence

ATGAAGAAAAGAAAAAGAAGGAAGGAATCGAGGATCAATTGCTCAAGTTACGAGTTGATTCTACTAGTGGAGGAATTAGTCCCAATAATAGAAGTGAACAAGGACGAGAATGCGAAAGACATCGAGAACGAGGAAGAGGATGAGGAAGACGTAGTTGGAGGCCCAATGAAGACAACAACAATAACTACCAAAGAGGATTGGAAAACTCAACAAGAGGTCATGGACAAGGCAACTCAAGATCAAGGTATGATAAATCAAACATTAAATCAAAGTGAATGGAGCAAAGATAAAACATGGTACCTGGACACTGGGGCAAACAATCAGCTTGATGAATTGGTGAGTGACAATGTAGCATTTGACGATGAATCCAAGGTAGAGGTAAAATGTAGAGGTAACATTCTCATTCGATTAAAGAATGGTGAGCACCAACTTATTTCAAATGTCAATTATGTGCCAAAATGA

Coding sequence (CDS)

ATGAAGAAAAGAAAAAGAAGGAAGGAATCGAGGATCAATTGCTCAAGTTACGAGTTGATTCTACTAGTGGAGGAATTAGTCCCAATAATAGAAGTGAACAAGGACGAGAATGCGAAAGACATCGAGAACGAGGAAGAGGATGAGGAAGACGTAGTTGGAGGCCCAATGAAGACAACAACAATAACTACCAAAGAGGATTGGAAAACTCAACAAGAGGTCATGGACAAGGCAACTCAAGATCAAGGTATGATAAATCAAACATTAAATCAAAGTGAATGGAGCAAAGATAAAACATGGTACCTGGACACTGGGGCAAACAATCAGCTTGATGAATTGGTGAGTGACAATGTAGCATTTGACGATGAATCCAAGGTAGAGGTAAAATGTAGAGGTAACATTCTCATTCGATTAAAGAATGGTGAGCACCAACTTATTTCAAATGTCAATTATGTGCCAAAATGA

Protein sequence

MKKRKRRKESRINCSSYELILLVEELVPIIEVNKDENAKDIENEEEDEEDVVGGPMKTTTITTKEDWKTQQEVMDKATQDQGMINQTLNQSEWSKDKTWYLDTGANNQLDELVSDNVAFDDESKVEVKCRGNILIRLKNGEHQLISNVNYVPK

Homology

[Close]

BLAST of PI0001930 vs. ExPASy TrEMBL
Match: A0A5D3DZJ9 (Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00040 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 23  VEELVPIIEVNKDENAKDIENEEEDEEDVVGGPMKTTTITTKEDWKTQQEVMDKATQDQ- 82
           VEELVPII+ NKD N  +IE+EEED +DV+GG MKTTTIT KED +TQ++V+DKATQDQ 
Sbjct: 17  VEELVPIIKANKDGNVVNIEDEEED-KDVLGGSMKTTTITAKEDGETQKKVVDKATQDQE 76

Query: 83  ---GMINQTLNQSEWSKDKTWYLDTGANN----------QLDELVSDNVAFDDESKVEVK 142
              G +      SEW+KD TWYLDTGANN          +LDE +S NVAF DESKVEVK
Sbjct: 77  KEFGTLLMACTNSEWNKDDTWYLDTGANNNMCGVRSMLVELDESMSANVAFGDESKVEVK 136

Query: 143 CRG---NILIRLKNGEHQLISNV 149
            R       ++LKN +    +NV
Sbjct: 137 GRAAQEKQGVKLKNSKALEHTNV 158

[Close]

BLAST of PI0001930 vs. ExPASy TrEMBL
Match: A0A2K3LZ87 (Receptor-like protein kinase (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g039893 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 66  DWKTQQEV---MDKATQDQGMINQTLNQSEWSKDKTWYLDTGANN----------QLDEL 125
           DW ++Q      D++  +   ++ T + +E   D  WYLD+GA+N          +LDEL
Sbjct: 227 DWISKQTTCYCRDQSCSNFIPVSNTPSDNERGGDNQWYLDSGASNHMCGRRSMFVELDEL 286

Query: 126 VSDNVAFDDESKVEVKCRGNILIRLKNGEHQLISNVNYV 152
           V+ NVAF DESKV VKC+GN+LIRLKNG+HQ ISNV YV
Sbjct: 287 VNGNVAFGDESKVAVKCKGNVLIRLKNGDHQFISNVFYV 325

[Close]

BLAST of PI0001930 vs. ExPASy TrEMBL
Match: A0A2Z6NEL1 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_394360 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.0e-13
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 74  MDKATQDQGMINQTLNQSEWSKDKTWYLDTGANN----------QLDELVSDNVAFDDES 133
           +++ +Q+ G +      +E   D  WYLD+GA+N          +LDE V++NVAF DES
Sbjct: 185 VEEISQEDGTLLLAHKDNEKGGDNQWYLDSGASNHMCGRRSMFVELDESVNENVAFGDES 244

Query: 134 KVEVKCRGNILIRLKNGEHQLISNVNYVP 153
           KV VK +GN+LIRLKNG+HQ ISNV YVP
Sbjct: 245 KVAVKGKGNVLIRLKNGDHQFISNVYYVP 273

[Close]

BLAST of PI0001930 vs. ExPASy TrEMBL
Match: A0A2Z6M8Q0 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_293160 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 74  MDKATQDQGMINQTLNQSEWSKDKTWYLDTGANN----------QLDELVSDNVAFDDES 133
           +++ +Q+ G +      +E   D  WYLD+GA+N          +LDE V+ NVAF DES
Sbjct: 309 VEEISQEDGTLLLAHKDNERGGDNQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDES 368

Query: 134 KVEVKCRGNILIRLKNGEHQLISNVNYVP 153
           KV VK +GN+LIRLKNG+HQ ISNV YVP
Sbjct: 369 KVAVKGKGNVLIRLKNGDHQFISNVYYVP 397

[Close]

BLAST of PI0001930 vs. ExPASy TrEMBL
Match: A0A5A7U120 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00560 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 12  INCSSYELILLVEELVPIIEVNKDENAKDIENEEEDE-EDVVGGPMKTTTITTKEDWKT- 71
           INCSSYELILLV++L+PIIEVNK EN  DI++EEED  +D++GG MKT TI TK   K  
Sbjct: 2   INCSSYELILLVKKLIPIIEVNKQENMVDIKDEEEDRIKDMIGGTMKTITIITKRGSKNA 61

Query: 72  -----QQEVMDKATQDQGM----------------INQTLNQSEWSKDKTWYLDTGANNQ 110
                Q++   +A +++ +                +    + S+WSKDKTWY + G +N 
Sbjct: 62  TRSRGQEKSRSRAPRNKRVEEKPNYIENRSRECDTLLMACSNSDWSKDKTWYPNMGTSNH 121

[Close]

BLAST of PI0001930 vs. NCBI nr
Match: KAA0040440.1 (lectin receptor kinase [Cucumis melo var. makuwa] >TYK28888.1 lectin receptor kinase [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-25
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 23  VEELVPIIEVNKDENAKDIENEEEDEEDVVGGPMKTTTITTKEDWKTQQEVMDKATQDQ- 82
           VEELVPII+ NKD N  +IE+EEED +DV+GG MKTTTIT KED +TQ++V+DKATQDQ 
Sbjct: 17  VEELVPIIKANKDGNVVNIEDEEED-KDVLGGSMKTTTITAKEDGETQKKVVDKATQDQE 76

Query: 83  ---GMINQTLNQSEWSKDKTWYLDTGANN----------QLDELVSDNVAFDDESKVEVK 142
              G +      SEW+KD TWYLDTGANN          +LDE +S NVAF DESKVEVK
Sbjct: 77  KEFGTLLMACTNSEWNKDDTWYLDTGANNNMCGVRSMLVELDESMSANVAFGDESKVEVK 136

Query: 143 CRG---NILIRLKNGEHQLISNV 149
            R       ++LKN +    +NV
Sbjct: 137 GRAAQEKQGVKLKNSKALEHTNV 158

[Close]

BLAST of PI0001930 vs. NCBI nr
Match: PNX83844.1 (receptor-like protein kinase, partial [Trifolium pratense])

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 66  DWKTQQEV---MDKATQDQGMINQTLNQSEWSKDKTWYLDTGANN----------QLDEL 125
           DW ++Q      D++  +   ++ T + +E   D  WYLD+GA+N          +LDEL
Sbjct: 227 DWISKQTTCYCRDQSCSNFIPVSNTPSDNERGGDNQWYLDSGASNHMCGRRSMFVELDEL 286

Query: 126 VSDNVAFDDESKVEVKCRGNILIRLKNGEHQLISNVNYV 152
           V+ NVAF DESKV VKC+GN+LIRLKNG+HQ ISNV YV
Sbjct: 287 VNGNVAFGDESKVAVKCKGNVLIRLKNGDHQFISNVFYV 325

[Close]

BLAST of PI0001930 vs. NCBI nr
Match: GAU34810.1 (hypothetical protein TSUD_394360 [Trifolium subterraneum])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-12
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 74  MDKATQDQGMINQTLNQSEWSKDKTWYLDTGANN----------QLDELVSDNVAFDDES 133
           +++ +Q+ G +      +E   D  WYLD+GA+N          +LDE V++NVAF DES
Sbjct: 185 VEEISQEDGTLLLAHKDNEKGGDNQWYLDSGASNHMCGRRSMFVELDESVNENVAFGDES 244

Query: 134 KVEVKCRGNILIRLKNGEHQLISNVNYVP 153
           KV VK +GN+LIRLKNG+HQ ISNV YVP
Sbjct: 245 KVAVKGKGNVLIRLKNGDHQFISNVYYVP 273

[Close]

BLAST of PI0001930 vs. NCBI nr
Match: KAA0047179.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-12
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 12  INCSSYELILLVEELVPIIEVNKDENAKDIENEEEDE-EDVVGGPMKTTTITTKEDWKT- 71
           INCSSYELILLV++L+PIIEVNK EN  DI++EEED  +D++GG MKT TI TK   K  
Sbjct: 2   INCSSYELILLVKKLIPIIEVNKQENMVDIKDEEEDRIKDMIGGTMKTITIITKRGSKNA 61

Query: 72  -----QQEVMDKATQDQGM----------------INQTLNQSEWSKDKTWYLDTGANNQ 110
                Q++   +A +++ +                +    + S+WSKDKTWY + G +N 
Sbjct: 62  TRSRGQEKSRSRAPRNKRVEEKPNYIENRSRECDTLLMACSNSDWSKDKTWYPNMGTSNH 121

[Close]

BLAST of PI0001930 vs. NCBI nr
Match: GAU28864.1 (hypothetical protein TSUD_293160 [Trifolium subterraneum])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-12
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 74  MDKATQDQGMINQTLNQSEWSKDKTWYLDTGANN----------QLDELVSDNVAFDDES 133
           +++ +Q+ G +      +E   D  WYLD+GA+N          +LDE V+ NVAF DES
Sbjct: 309 VEEISQEDGTLLLAHKDNERGGDNQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDES 368

Query: 134 KVEVKCRGNILIRLKNGEHQLISNVNYVP 153
           KV VK +GN+LIRLKNG+HQ ISNV YVP
Sbjct: 369 KVAVKGKGNVLIRLKNGDHQFISNVYYVP 397

The following BLAST results are available for this feature:

BLAST of PI0001930 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZJ9	1.8e-25	55.94	Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A2K3LZ87	2.1e-13	48.48	Receptor-like protein kinase (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g...	[more]
A0A2Z6NEL1	8.0e-13	49.44	Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ...	[more]
A0A2Z6M8Q0	1.8e-12	49.44	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_293160 PE=4 SV...	[more]
A0A5A7U120	1.8e-12	42.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of PI0001930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040440.1	3.8e-25	55.94	lectin receptor kinase [Cucumis melo var. makuwa] >TYK28888.1 lectin receptor ki...	[more]
PNX83844.1	4.3e-13	48.48	receptor-like protein kinase, partial [Trifolium pratense]	[more]
GAU34810.1	1.7e-12	49.44	hypothetical protein TSUD_394360 [Trifolium subterraneum]	[more]
KAA0047179.1	3.7e-12	42.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
GAU28864.1	3.7e-12	49.44	hypothetical protein TSUD_293160 [Trifolium subterraneum]	[more]

BLAST of PI0001930 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001930.1	PI0001930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0005488	binding