PI0001875 (gene) Melon (PI 482460) v1

Overview


Name	PI0001875
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger, C3HC4 type family protein
Location	chr12: 23172691 .. 23173660 (-)
RNA-Seq Expression	PI0001875
Synteny	PI0001875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAAAAGTTGGGTGCAGCCCCGCCAGGAACCGAAGGTTCTCTCTTTACTATAGCCCAATCGTGGCCGCCTGGCTCCCTCCATAATCTTTCCCCAAAAAACCTTTCTTTATTTCTTTCTCCGACGGAAATCAAGCCGTGAAGCTTTATGTCACCATGATTTCCATTCTTGCTCAGGTAACCTACCGTCCATGGTCGTATGAATTTCCAGAGCTGATTCGATTTCCTTGCCGTTTCTTTGATACTACTTGATCTCACTCTCTTTTCCTTTTTGGTTGACATCCCAAATTTAATTGCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGTGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCGATCCATTTCCGAAAACTATCCACCAGCAACCCAATCTCCGGTGAGGGCAAATTCCCCTTTCTTGTAACCCTAATGATAATTCATTAATTGTTTGTGATTAACCATTGTTTCGAGACAATTAGGATGGAATTGCATTGATATATGTATGAAAATGTAGATCCTTTGAATATTTGGATGTTTGGGTTTAAGGGGGAGAAGAGAATGAAATGTTTGAAATTATCAAAATTTTCAATAATGCAATTGTTAAATTAGTGTTATATATATCTGAAAAGTGTATTAACCTACAATTTATATGCTTTTTTTTTGTGTGTTTACTTTATATATCAATATTAATTCATGCTAATTTTTTTTTTCTATTTAAAAATTGAGAAATACATATCTTGTCAAAGATGTATAATTCCGTTTCTGAATTTAATACTTCCATCTAGTTACTAATCCATTAATTTAATATCATCCTCTTTGAAACTACTTTAGATGAGAAAACCTGTACTAGCAAAGAAGTATGGCCCAGAGTTTTCGCACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGA

mRNA sequence

ATGGCAGCAAAAGTTGGGTGCAGCCCCGCCAGGAACCGAAGGTTCTCTCTTTACTATAGCCCAATCGAGCGACTGCTTGGTGCTGCATTGGGGAGTGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCGATCCATTTCCGAAAACTATCCACCAGCAACCCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAGTATGGCCCAGAGTTTTCGCACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGA

Coding sequence (CDS)

ATGGCAGCAAAAGTTGGGTGCAGCCCCGCCAGGAACCGAAGGTTCTCTCTTTACTATAGCCCAATCGAGCGACTGCTTGGTGCTGCATTGGGGAGTGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCGATCCATTTCCGAAAACTATCCACCAGCAACCCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAGTATGGCCCAGAGTTTTCGCACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGA

Protein sequence

MAAKVGCSPARNRRFSLYYSPIERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

Homology

[Close]

BLAST of PI0001875 vs. ExPASy TrEMBL
Match: A0A0A0LXB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.6e-36
Identity = 89/137 (64.96%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 1   MAAKVGCSPAR---------------------------------NRRFSLYYSPI----- 60
           MAAKVGCSPA                                  N+   LY + I     
Sbjct: 1   MAAKVGCSPATTESSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQ 60

Query: 61  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 100
           ERLLG ALGSVFAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA
Sbjct: 61  ERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 120

[Close]

BLAST of PI0001875 vs. ExPASy TrEMBL
Match: A0A5D3BR76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00590 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.1e-34
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLG ALGS FAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA
Sbjct: 8   ERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGP+IQALSSRGW
Sbjct: 68  VDQTFGPMIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. ExPASy TrEMBL
Match: A0A1S3C5P6 (uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497197 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.1e-34
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLG ALGS FAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA
Sbjct: 8   ERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGP+IQALSSRGW
Sbjct: 68  VDQTFGPMIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. ExPASy TrEMBL
Match: A0A6J1DSC3 (uncharacterized protein LOC111023455 OS=Momordica charantia OX=3673 GN=LOC111023455 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.1e-34
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPA QSPMRKPV+AKKYGPE SHLWNRA
Sbjct: 8   ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGP+IQALSSRGW
Sbjct: 68  VDQTFGPMIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. ExPASy TrEMBL
Match: A0A6J1HZ79 (uncharacterized protein LOC111469446 OS=Cucurbita maxima OX=3661 GN=LOC111469446 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.1e-34
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLGAALGSVFAGVVVFEQRKSLY SIS+NYPP TQSPMRKPVLAKKYGPEFSHLWN A
Sbjct: 8   ERLLGAALGSVFAGVVVFEQRKSLYDSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGPVIQALSSRGW
Sbjct: 68  VDQTFGPVIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. NCBI nr
Match: XP_004152895.1 (uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 9.9e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLG ALGSVFAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA
Sbjct: 8   ERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGPVIQALSSRGW
Sbjct: 68  VDQTFGPVIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. NCBI nr
Match: KGN66041.2 (hypothetical protein Csa_019677 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34
Identity = 89/139 (64.03%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 1   MAAKVGCSPAR---------------------------------NRRFSLYYSPI----- 60
           MAAKVGCSPA                                  N+   LY + I     
Sbjct: 1   MAAKVGCSPATTEGSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQ 60

Query: 61  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSP--MRKPVLAKKYGPEFSHLWN 100
           ERLLG ALGSVFAGVVVFEQRKSLY+SISENYPPATQSP  MRKPVLAKKYGPEFSHLWN
Sbjct: 61  ERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPVSMRKPVLAKKYGPEFSHLWN 120

[Close]

BLAST of PI0001875 vs. NCBI nr
Match: XP_008457526.1 (PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA0033888.1 uncharacterized protein E6C27_scaffold43059G00730 [Cucumis melo var. makuwa] >TYK01272.1 uncharacterized protein E5676_scaffold49G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 6.4e-34
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLG ALGS FAGVVVFEQRKSLY+SISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA
Sbjct: 8   ERLLGFALGSAFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGP+IQALSSRGW
Sbjct: 68  VDQTFGPMIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. NCBI nr
Match: XP_022156577.1 (uncharacterized protein LOC111023455 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 8.4e-34
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPA QSPMRKPV+AKKYGPE SHLWNRA
Sbjct: 8   ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGP+IQALSSRGW
Sbjct: 68  VDQTFGPMIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. NCBI nr
Match: XP_023519919.1 (uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRA 82
           ERLLGAALGSVFAGVVVFEQRKSLY SIS+NYPP TQSPMRKPVLAKKYGPEFSHLWN A
Sbjct: 8   ERLLGAALGSVFAGVVVFEQRKSLYESISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSA 67

Query: 83  VDQTFGPVIQALSSRGW 100
           VDQTFGPVIQALSSRGW
Sbjct: 68  VDQTFGPVIQALSSRGW 84

[Close]

BLAST of PI0001875 vs. TAIR 10
Match: AT2G28430.1 (unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-15
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 23  ERLLGAALGSVFAGVVVFEQRKSLYRSISE-NYPPATQSPMRKPVLAKKYGPEFSHLWNR 82
           ERLLG  LGS   G +VFEQRK ++ S+S+       Q+ +   +  KKY  EF+ LWN+
Sbjct: 8   ERLLGYTLGSALTGFIVFEQRKLIHDSVSDPKSQSIDQAQVSDRIFGKKYRMEFASLWNK 67

Query: 83  AVDQTFGPVIQALSSRGW 100
           AVDQTF P I+ LSSR W
Sbjct: 68  AVDQTFEPAIEYLSSRKW 85

The following BLAST results are available for this feature:

BLAST of PI0001875 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXB2	2.6e-36	64.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1	[more]
A0A5D3BR76	3.1e-34	94.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C5P6	3.1e-34	94.81	uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DSC3	4.1e-34	94.81	uncharacterized protein LOC111023455 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1HZ79	9.1e-34	94.81	uncharacterized protein LOC111469446 OS=Cucurbita maxima OX=3661 GN=LOC111469446...	[more]

BLAST of PI0001875 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152895.1	9.9e-35	97.40	uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]	[more]
KGN66041.2	1.7e-34	64.03	hypothetical protein Csa_019677 [Cucumis sativus]	[more]
XP_008457526.1	6.4e-34	94.81	PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_022156577.1	8.4e-34	94.81	uncharacterized protein LOC111023455 [Momordica charantia]	[more]
XP_023519919.1	1.1e-33	94.81	uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0001875 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28430.1	4.2e-15	50.00	unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37720:SF2	OS10G0481400 PROTEIN	coord: 23..99
None	No IPR available	PANTHER	PTHR37720	OS10G0481400 PROTEIN	coord: 23..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001875.1	PI0001875.1	mRNA