PI0001779 (gene) Melon (PI 482460) v1

Overview


Name	PI0001779
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr07: 18960292 .. 18960774 (+)
RNA-Seq Expression	PI0001779
Synteny	PI0001779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCCAAGAAGGATACGAGCCACCCGTTGAGCTAGTCGTTGAAGGGCCAACGACACGAGGATGTACTGCACAATGTTCTCCTTCCAAGCGACCCAAGGCGAAAGACACGACTTCGAAAGACACAACGGAAGCACGCTTAGCCCACTTGGAAGAATGTATGGAAAATGTGCAAGCTATGATCAGTAGGCTAAGTGAAGACTATGAGGGGTTAATCCAGGAAAATGTCGAGATCAGCGCTGCTGTAAAAGATATGATCAAGGAGATCAAGTTGTCATTCGATAGAGATTTCAACACTTTATCAAGCGAAGTGGCCAACCTACGGAAATTCGTAGAGGAGAGACCTACGAATTACGTAAAGAGATCGAACGCATCCATGTCGAGTTCACTACTTATCGTGTTGCAACGAACGATCAGGCGTCGACCAACAACACGACAGGCACACAGGAACGTGTGCAAAGGCAAGTTACACCCGAATTGA

mRNA sequence

ATGGCATCCCAAGAAGGATACGAGCCACCCGTTGAGCTAGTCGTTGAAGGGCCAACGACACGAGGATGTACTGCACAATGTTCTCCTTCCAAGCGACCCAAGGCGAAAGACACGACTTCGAAAGACACAACGGAAGCACGCTTAGCCCACTTGGAAGAATGTATGGAAAATGTGCAAGCTATGATCAGTAGGCTAAGTGAAGACTATGAGGGGTTAATCCAGGAAAATGTCGAGATCAGCGCTGCTGTAAAAGATATGATCAAGGAGATCAAGTTGTCATTCGATAGAGATTTCAACACTTTATCAAGCGAAGTGGCCAACCTACGGAAATTCGTAGAGGAGAGACCTACGAATTACGTAAAGAGATCGAACGCATCCATGTCGAGTTCACTACTTATCGTGTTGCAACGAACGATCAGGCGTCGACCAACAACACGACAGGCACACAGGAACGTGTGCAAAGGCAAGTTACACCCGAATTGA

Coding sequence (CDS)

ATGGCATCCCAAGAAGGATACGAGCCACCCGTTGAGCTAGTCGTTGAAGGGCCAACGACACGAGGATGTACTGCACAATGTTCTCCTTCCAAGCGACCCAAGGCGAAAGACACGACTTCGAAAGACACAACGGAAGCACGCTTAGCCCACTTGGAAGAATGTATGGAAAATGTGCAAGCTATGATCAGTAGGCTAAGTGAAGACTATGAGGGGTTAATCCAGGAAAATGTCGAGATCAGCGCTGCTGTAAAAGATATGATCAAGGAGATCAAGTTGTCATTCGATAGAGATTTCAACACTTTATCAAGCGAAGTGGCCAACCTACGGAAATTCGTAGAGGAGAGACCTACGAATTACGTAAAGAGATCGAACGCATCCATGTCGAGTTCACTACTTATCGTGTTGCAACGAACGATCAGGCGTCGACCAACAACACGACAGGCACACAGGAACGTGTGCAAAGGCAAGTTACACCCGAATTGA

Protein sequence

MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQAMISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVEERPTNYVKRSNASMSSSLLIVLQRTIRRRPTTRQAHRNVCKGKLHPN

Homology

[Close]

BLAST of PI0001779 vs. ExPASy TrEMBL
Match: A0A5D3BYX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00540 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           MASQEGYE PVE VVEGPT RG T Q SPSKRPK K   +KDTT+  LA+LEE  E+VQ+
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLS+DYEGL++ENVEISAA K+MIKEI  SF RD N LS +VANL+KFVE
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVE 113

[Close]

BLAST of PI0001779 vs. ExPASy TrEMBL
Match: A0A5A7VIG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00500 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.7e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           MASQEGYE PVE VVEGPT RG T Q SPSKRPK K   +KDTT+  LA+LEE  E+VQ+
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLS+DYEGL++ENVEISAA K++IKEI  SF RD N LS +VANL+KFVE
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVE 113

[Close]

BLAST of PI0001779 vs. ExPASy TrEMBL
Match: A0A5D3D3V4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004150 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.6e-18
Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           M+++EG+  PVE V+EGP TRG   Q SP++R K+K  T ++  + RL +LE+ ME+VQ 
Sbjct: 91  MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 150

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLSE++E L+QEN EI++  K+MI+++  +F ++   L+S V  L+ FVE
Sbjct: 151 AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVE 203

[Close]

BLAST of PI0001779 vs. ExPASy TrEMBL
Match: A0A5A7TFP3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006290 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.6e-18
Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           M+++EG+  PVE V+EGP TRG   Q SP++R K+K  T ++  + RL +LE+ ME+VQ 
Sbjct: 154 MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 213

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLSE++E L+QEN EI++  K+MI+++  +F ++   L+S V  L+ FVE
Sbjct: 214 AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVE 266

[Close]

BLAST of PI0001779 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-17
Identity = 49/113 (43.36%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           M+++EG+  PVE V+EGP TRG   Q SP++R K+K    ++  + RL +LE+ ME+VQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLSE++E L+QEN EI++  K+MI+++  +F  +   L+S V  L+ FVE
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVE 113

[Close]

BLAST of PI0001779 vs. NCBI nr
Match: TYK04320.1 (uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-32
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           MASQEGYE PVE VVEGPT RG T Q SPSKRPK K   +KDTT+  LA+LEE  E+VQ+
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLS+DYEGL++ENVEISAA K+MIKEI  SF RD N LS +VANL+KFVE
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVE 113

[Close]

BLAST of PI0001779 vs. NCBI nr
Match: KAA0067893.1 (uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 9.7e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           MASQEGYE PVE VVEGPT RG T Q SPSKRPK K   +KDTT+  LA+LEE  E+VQ+
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLS+DYEGL++ENVEISAA K++IKEI  SF RD N LS +VANL+KFVE
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVE 113

[Close]

BLAST of PI0001779 vs. NCBI nr
Match: KAE8637433.1 (hypothetical protein CSA_004611, partial [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 56/114 (49.12%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           MAS+EGYE PVE VVEGPTTRG  AQ SPS++ KA  +T++D  E R A LE  +E VQ 
Sbjct: 1   MASREGYESPVEQVVEGPTTRGRAAQRSPSRQNKATTSTTRDVVEERFATLEGKLEEVQE 60

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVEE 115
            +   SE  E L+ ++ E+S   K MI++++ S  +D + L  EV N+RKF+EE
Sbjct: 61  KLGETSELMEELLVDHAEVSKITKAMIEDLRDSHGKDIHDLIVEVTNMRKFMEE 114

[Close]

BLAST of PI0001779 vs. NCBI nr
Match: KAA0042140.1 (uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           M+++EG+  PVE V+EGP TRG   Q SP++R K+K  T ++  + RL +LE+ ME+VQ 
Sbjct: 154 MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 213

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLSE++E L+QEN EI++  K+MI+++  +F ++   L+S V  L+ FVE
Sbjct: 214 AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVE 266

[Close]

BLAST of PI0001779 vs. NCBI nr
Match: TYK18079.1 (uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MASQEGYEPPVELVVEGPTTRGCTAQCSPSKRPKAKDTTSKDTTEARLAHLEECMENVQA 60
           M+++EG+  PVE V+EGP TRG   Q SP++R K+K  T ++  + RL +LE+ ME+VQ 
Sbjct: 91  MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 150

Query: 61  MISRLSEDYEGLIQENVEISAAVKDMIKEIKLSFDRDFNTLSSEVANLRKFVE 114
            + RLSE++E L+QEN EI++  K+MI+++  +F ++   L+S V  L+ FVE
Sbjct: 151 AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVE 203

The following BLAST results are available for this feature:

BLAST of PI0001779 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYX0	1.6e-32	69.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VIG6	4.7e-32	68.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D3V4	6.6e-18	44.25	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TFP3	6.6e-18	44.25	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VEX8	3.3e-17	43.36	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]

BLAST of PI0001779 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04320.1	3.3e-32	69.03	uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa]	[more]
KAA0067893.1	9.7e-32	68.14	uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa]	[more]
KAE8637433.1	1.4e-17	49.12	hypothetical protein CSA_004611, partial [Cucumis sativus]	[more]
KAA0042140.1	1.4e-17	44.25	uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]	[more]
TYK18079.1	1.4e-17	44.25	uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]	[more]

BLAST of PI0001779 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001779.1	PI0001779.1	mRNA