Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATACGAGGTAAACTCCTACGCCTTAGACAAACTGGGAGTATATTTGATTATGTTAAGGAGTTTTCCAGGCTCATGCTAGAAATAGACGACTTGTCCGAGAAAGATGTCCTTTTCCATTTTAAAGACAGATTAAAGGATTGGGCCAAGGTGGAACTAGACCGTCGAAATGTACAAACCCTAGATAACGCCAATGCTGTAGCAGAGACTCTTGTTGATTACTCTATCCAACAAAAGGGGAAGAAGTCTGGTCCGTTCAAAAGTGGAAAGGGTGAGAAGCAAAAAGATCATGCTCGACGAGAAGGCGGAAAGGCAAAATCTTTCAACGGCAAGTATGGCAAGGCTACGGGCAACCATAAAGGTGAGTCCTCCAAACCCCCTAAACTTTGCTTTGTCTGTGATGACCCACATTGAACAAGAGATTCTCCAAATCGGAAAGCTATGAATCCTCTCGTGGCCAAACTTCGAGAAACCAAGCAAAATGCCACCACACAGAAGGCCCATATGCGATCGCTCCAATTCCTTAATGTCGTAGCTGCATACCTGGTGGAGGAAGACTAG
mRNA sequence
ATGGAAATACGAGGTAAACTCCTACGCCTTAGACAAACTGGGAGTATATTTGATTATGTTAAGGAGTTTTCCAGGCTCATGCTAGAAATAGACGACTTGTCCGAGAAAGATGTCCTTTTCCATTTTAAAGACAGATTAAAGGATTGGGCCAAGGTGGAACTAGACCGTCGAAATGTACAAACCCTAGATAACGCCAATGCTGTAGCAGAGACTCTTGTTGATTACTCTATCCAACAAAAGGGGAAGAAGTCTGGTCCGTTCAAAAGTGGAAAGGGTGAGAAGCAAAAAGATCATGCTCGACGAGAAGGCGGAAAGGCAAAATCTTTCAACGGCAAGTATGGCAAGGCTACGGGCAACCATAAAGATTCTCCAAATCGGAAAGCTATGAATCCTCTCGTGGCCAAACTTCGAGAAACCAAGCAAAATGCCACCACACAGAAGGCCCATATGCGATCGCTCCAATTCCTTAATGTCGTAGCTGCATACCTGGTGGAGGAAGACTAG
Coding sequence (CDS)
ATGGAAATACGAGGTAAACTCCTACGCCTTAGACAAACTGGGAGTATATTTGATTATGTTAAGGAGTTTTCCAGGCTCATGCTAGAAATAGACGACTTGTCCGAGAAAGATGTCCTTTTCCATTTTAAAGACAGATTAAAGGATTGGGCCAAGGTGGAACTAGACCGTCGAAATGTACAAACCCTAGATAACGCCAATGCTGTAGCAGAGACTCTTGTTGATTACTCTATCCAACAAAAGGGGAAGAAGTCTGGTCCGTTCAAAAGTGGAAAGGGTGAGAAGCAAAAAGATCATGCTCGACGAGAAGGCGGAAAGGCAAAATCTTTCAACGGCAAGTATGGCAAGGCTACGGGCAACCATAAAGATTCTCCAAATCGGAAAGCTATGAATCCTCTCGTGGCCAAACTTCGAGAAACCAAGCAAAATGCCACCACACAGAAGGCCCATATGCGATCGCTCCAATTCCTTAATGTCGTAGCTGCATACCTGGTGGAGGAAGACTAG
Protein sequence
MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQTLDNANAVAETLVDYSIQQKGKKSGPFKSGKGEKQKDHARREGGKAKSFNGKYGKATGNHKDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVVAAYLVEED
Homology
BLAST of PI0001705 vs. ExPASy TrEMBL
Match:
A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 7.8e-38
Identity = 100/180 (55.56%), Postives = 117/180 (65.00%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A AVAETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F K GK G
Sbjct: 309 TLDDAIAVAETLVDYSAQSKGKKPGPEKHGGKSDKTKNFGRKDGGKVKTFQWKNGKNDGA 368
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 369 HRGESSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVM 428
BLAST of PI0001705 vs. ExPASy TrEMBL
Match:
A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.7e-37
Identity = 98/180 (54.44%), Postives = 116/180 (64.44%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI +YVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A AETLVDYS Q KGKK GP K GK +K K+ RR+GGK K+F K GK G
Sbjct: 309 TLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKSDKTKNFGRRDGGKVKTFQWKNGKNDGA 368
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PN+KA+N LVAK +E KQ + S+Q + V+
Sbjct: 369 HRGESSNPPKPCFICKGPHWTRDCPNQKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVM 428
BLAST of PI0001705 vs. ExPASy TrEMBL
Match:
A0A5A7SJU9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002790 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.7e-37
Identity = 98/180 (54.44%), Postives = 115/180 (63.89%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 293 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 352
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A ETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F K GK G
Sbjct: 353 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 412
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 413 HRGECSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVM 472
BLAST of PI0001705 vs. ExPASy TrEMBL
Match:
A0A1S3C1B3 (uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.7e-37
Identity = 98/180 (54.44%), Postives = 115/180 (63.89%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 160 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 219
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A ETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F K GK G
Sbjct: 220 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 279
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 280 HRGECSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVM 339
BLAST of PI0001705 vs. ExPASy TrEMBL
Match:
A0A5A7VLQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00920 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 98/180 (54.44%), Postives = 116/180 (64.44%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 19 IESRGKLRRLRHTGSILDYVKEFTILMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 78
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A AETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F + GK G
Sbjct: 79 TLDDAIAAAETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWRNGKNDGA 138
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 139 HRGESSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVM 198
BLAST of PI0001705 vs. NCBI nr
Match:
KAA0040659.1 (uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa])
HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 100/180 (55.56%), Postives = 117/180 (65.00%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A AVAETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F K GK G
Sbjct: 309 TLDDAIAVAETLVDYSAQSKGKKPGPEKHGGKSDKTKNFGRKDGGKVKTFQWKNGKNDGA 368
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 369 HRGESSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVM 428
BLAST of PI0001705 vs. NCBI nr
Match:
XP_008455798.1 (PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo])
HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 98/180 (54.44%), Postives = 115/180 (63.89%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 160 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 219
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A ETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F K GK G
Sbjct: 220 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 279
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 280 HRGECSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVM 339
BLAST of PI0001705 vs. NCBI nr
Match:
KAA0065760.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 98/180 (54.44%), Postives = 116/180 (64.44%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI +YVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A AETLVDYS Q KGKK GP K GK +K K+ RR+GGK K+F K GK G
Sbjct: 309 TLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKSDKTKNFGRRDGGKVKTFQWKNGKNDGA 368
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PN+KA+N LVAK +E KQ + S+Q + V+
Sbjct: 369 HRGESSNPPKPCFICKGPHWTRDCPNQKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVM 428
BLAST of PI0001705 vs. NCBI nr
Match:
KAA0025964.1 (uncharacterized protein E6C27_scaffold34G002790 [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 98/180 (54.44%), Postives = 115/180 (63.89%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 293 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 352
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A ETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F K GK G
Sbjct: 353 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 412
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 413 HRGECSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVM 472
BLAST of PI0001705 vs. NCBI nr
Match:
KAA0068130.1 (uncharacterized protein E6C27_scaffold238G00920 [Cucumis melo var. makuwa])
HSP 1 Score: 162.5 bits (410), Expect = 3.1e-36
Identity = 98/180 (54.44%), Postives = 116/180 (64.44%), Query Frame = 0
Query: 1 MEIRGKLLRLRQTGSIFDYVKEFSRLMLEIDDLSEKDVLFHFKDRLKDWAKVELDRRNVQ 60
+E RGKL RLR TGSI DYVKEF+ LMLEI DL EK+ LF FKD LKDWAK+ELDRRNVQ
Sbjct: 19 IESRGKLRRLRHTGSILDYVKEFTILMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 78
Query: 61 TLDNANAVAETLVDYSIQQKGKKSGPFK-SGKGEKQKDHARREGGKAKSFNGKYGKATGN 120
TLD+A A AETLVDYS Q KGKK GP K GK +K K+ R++GGK K+F + GK G
Sbjct: 79 TLDDAIAAAETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWRNGKNDGA 138
Query: 121 H--------------------KDSPNRKAMNPLVAKLRETKQNATTQKAHMRSLQFLNVV 160
H +D PNRKA+N LVAK +E KQ + S+Q + V+
Sbjct: 139 HRGESSNPPKPCFICKGPHWTRDCPNRKALNALVAKFQEIKQVEDAPGPQIGSMQQIGVM 198
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7THC0 | 7.8e-38 | 55.56 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5A7VEX8 | 8.7e-37 | 54.44 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=... | [more] |
| A0A5A7SJU9 | 8.7e-37 | 54.44 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A1S3C1B3 | 8.7e-37 | 54.44 | uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=... | [more] |
| A0A5A7VLQ6 | 1.5e-36 | 54.44 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0040659.1 | 1.6e-37 | 55.56 | uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa] | [more] |
| XP_008455798.1 | 1.8e-36 | 54.44 | PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo] | [more] |
| KAA0065760.1 | 1.8e-36 | 54.44 | polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0025964.1 | 1.8e-36 | 54.44 | uncharacterized protein E6C27_scaffold34G002790 [Cucumis melo var. makuwa] | [more] |
| KAA0068130.1 | 3.1e-36 | 54.44 | uncharacterized protein E6C27_scaffold238G00920 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
