PI0001611 (gene) Melon (PI 482460) v1

Overview


Name	PI0001611
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pro-like protein
Location	chr11: 26613618 .. 26614103 (-)
RNA-Seq Expression	PI0001611
Synteny	PI0001611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGAGGAGGCTATAGATGAAGTGGTAAAGCCACACAGGCCTAAAATTGAAGTGATGACCACTAGGATGATGAAAGACGGAAGACCTTCTTTGAATCAAAGCTTAGAGTTGCTTTTAAAAATGTCAAGCAACGAAGGGAGATTTGGTTTGGGCTATAAGCCATCCGTATATGACAAGATTAGGCTTCAAGAAGAAAAGAAAAAAAAGCGTTTGGCAAAGCAAGATATGAAGGAGTTTGATCCGGGTCTAAAATTTATACCAGCGCTGTACGATACTTTCAAGAGTGCTGGTATAAGTTACTCATCACATGACTCTAATTCGAAGGATTGTCTGTTAATGAAGATGGAGAGTTTATTGATTGCAGCGGTGGCACCTGAAACATCATTTGAAGGCGACACAGTTTATGCCTGTCCACCTGATTTCGAGCTTAACAAATTGGATATTGTAGATCTACCTACATTTTCAAGAGAATTTCAAGAGTAA

mRNA sequence

ATGATAGAGGAGGCTATAGATGAAGTGGTAAAGCCACACAGGCCTAAAATTGAAGTGATGACCACTAGGATGATGAAAGACGGAAGACCTTCTTTGAATCAAAGCTTAGAGTTGCTTTTAAAAATGTCAAGCAACGAAGGGAGATTTGGTTTGGGCTATAAGCCATCCGTATATGACAAGATTAGGCTTCAAGAAGAAAAGAAAAAAAAGCGTTTGGCAAAGCAAGATATGAAGGAGTTTGATCCGGGTCTAAAATTTATACCAGCGCTGTACGATACTTTCAAGAGTGCTGGTATAAGTTACTCATCACATGACTCTAATTCGAAGGATTGTCTGTTAATGAAGATGGAGAGTTTATTGATTGCAGCGGTGGCACCTGAAACATCATTTGAAGGCGACACAGTTTATGCCTGTCCACCTGATTTCGAGCTTAACAAATTGGATATTGTAGATCTACCTACATTTTCAAGAGAATTTCAAGAGTAA

Coding sequence (CDS)

ATGATAGAGGAGGCTATAGATGAAGTGGTAAAGCCACACAGGCCTAAAATTGAAGTGATGACCACTAGGATGATGAAAGACGGAAGACCTTCTTTGAATCAAAGCTTAGAGTTGCTTTTAAAAATGTCAAGCAACGAAGGGAGATTTGGTTTGGGCTATAAGCCATCCGTATATGACAAGATTAGGCTTCAAGAAGAAAAGAAAAAAAAGCGTTTGGCAAAGCAAGATATGAAGGAGTTTGATCCGGGTCTAAAATTTATACCAGCGCTGTACGATACTTTCAAGAGTGCTGGTATAAGTTACTCATCACATGACTCTAATTCGAAGGATTGTCTGTTAATGAAGATGGAGAGTTTATTGATTGCAGCGGTGGCACCTGAAACATCATTTGAAGGCGACACAGTTTATGCCTGTCCACCTGATTTCGAGCTTAACAAATTGGATATTGTAGATCTACCTACATTTTCAAGAGAATTTCAAGAGTAA

Protein sequence

MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDKIRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLLIAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE

Homology

[Close]

BLAST of PI0001611 vs. ExPASy TrEMBL
Match: A0A5A7UM01 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00170 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 118/154 (76.62%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 8   EVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDKIRLQEEK 67
           EV+KPH+ K+EVMTTR+M  G  SLNQ+LE LLK  SN+GRFGLGYKPS+YDKIRLQEEK
Sbjct: 556 EVIKPHKSKVEVMTTRIMGGGGYSLNQNLETLLKTPSNDGRFGLGYKPSIYDKIRLQEEK 615

Query: 68  KKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLLIAAVAPE 127
           KKKRLAK +M+EFDP +KFIP LYD FKSAGISYSSH+S+ KD LL KMESL +AAVA +
Sbjct: 616 KKKRLAKLEMREFDPSIKFIPELYDIFKSAGISYSSHNSDLKDDLLTKMESLSVAAVAQQ 675

Query: 128 TSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
           TSFEG+TVYACPPDFELN  D VDLPTFSR+FQE
Sbjct: 676 TSFEGNTVYACPPDFELNNWDSVDLPTFSRDFQE 709

[Close]

BLAST of PI0001611 vs. ExPASy TrEMBL
Match: A0A5A7T5W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00270 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 118/161 (73.29%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1   MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
           M+E  +DEV+KPH+ K+EVMTTR+M  G  SLN++LE LLK+ SN+GRFGLGYKPS+YDK
Sbjct: 794 MMEATVDEVIKPHKSKVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDK 853

Query: 61  IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
           IRLQEEKKKKRLAK +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LL KMESL 
Sbjct: 854 IRLQEEKKKKRLAKLEMREFDPSVKLIPELYDTFKSAGISYSSDNSDLKDDLLTKMESLS 913

Query: 121 IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
           +A VA E SFEG+TVYACPPDFELN  D VDLPTFSR+FQE
Sbjct: 914 VAVVAQEASFEGNTVYACPPDFELNNWDSVDLPTFSRDFQE 954

[Close]

BLAST of PI0001611 vs. ExPASy TrEMBL
Match: A0A5A7V6I2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00020 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.5e-59
Identity = 120/161 (74.53%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1   MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
           +I  A+DEV KPHR K+E+MTTR+M++G  SLNQ+L+ LLK  SN+GRFGLGYKPS+YDK
Sbjct: 347 VIHVAVDEVKKPHRFKVEIMTTRIMREGY-SLNQNLDTLLKSPSNDGRFGLGYKPSIYDK 406

Query: 61  IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
           IRLQEE KKKRLAK +M++FDP LKFIP LYDTFKSA ISYSS++S+ KD LL KMESLL
Sbjct: 407 IRLQEENKKKRLAKLEMRDFDPSLKFIPVLYDTFKSARISYSSNNSDLKDGLLTKMESLL 466

Query: 121 IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
           +AAVA E SFEG+ VYACPPDFELN  DIVDLPTFSREFQE
Sbjct: 467 VAAVAQEASFEGNIVYACPPDFELNNWDIVDLPTFSREFQE 506

[Close]

BLAST of PI0001611 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.8e-59
Identity = 116/161 (72.05%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1    MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
            M+E  +DEV+KPH+ K+EVMTTR+M  G  SLN++LE LLK+ SN+GRFGLGYKPS+YDK
Sbjct: 932  MMEATVDEVIKPHKSKVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDK 991

Query: 61   IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
            IRLQE+KKKKRLAK +M+EFDP +K IP LYD FKSAGISYSSH+S+ KD LL KM SL 
Sbjct: 992  IRLQEKKKKKRLAKLEMREFDPSIKLIPELYDIFKSAGISYSSHNSDLKDDLLTKMGSLS 1051

Query: 121  IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
            +AAVA E SFEG+TVYACPPDFELN  D VDLPTFSR+FQ+
Sbjct: 1052 VAAVAQEASFEGNTVYACPPDFELNNWDSVDLPTFSRDFQD 1092

[Close]

BLAST of PI0001611 vs. ExPASy TrEMBL
Match: A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.8e-59
Identity = 116/161 (72.05%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1    MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
            M+E  +DEV+KPH+ K+EVMTTR+M  G  SLN++LE LLK+ SN+GRFGLGYKPS+YDK
Sbjct: 1349 MMEATVDEVIKPHKSKVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDK 1408

Query: 61   IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
            IRLQE+KKKKRL K +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LL KMESL 
Sbjct: 1409 IRLQEKKKKKRLVKLEMREFDPSIKLIPELYDTFKSAGISYSSDNSDLKDDLLTKMESLS 1468

Query: 121  IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
            +AAVA E SFEG+TVYACPPDFELN  D VDLPTFSR+FQ+
Sbjct: 1469 VAAVAQEASFEGNTVYACPPDFELNNWDSVDLPTFSRDFQD 1509

[Close]

BLAST of PI0001611 vs. NCBI nr
Match: KAA0055607.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK24460.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.2e-59
Identity = 118/154 (76.62%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 8   EVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDKIRLQEEK 67
           EV+KPH+ K+EVMTTR+M  G  SLNQ+LE LLK  SN+GRFGLGYKPS+YDKIRLQEEK
Sbjct: 556 EVIKPHKSKVEVMTTRIMGGGGYSLNQNLETLLKTPSNDGRFGLGYKPSIYDKIRLQEEK 615

Query: 68  KKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLLIAAVAPE 127
           KKKRLAK +M+EFDP +KFIP LYD FKSAGISYSSH+S+ KD LL KMESL +AAVA +
Sbjct: 616 KKKRLAKLEMREFDPSIKFIPELYDIFKSAGISYSSHNSDLKDDLLTKMESLSVAAVAQQ 675

Query: 128 TSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
           TSFEG+TVYACPPDFELN  D VDLPTFSR+FQE
Sbjct: 676 TSFEGNTVYACPPDFELNNWDSVDLPTFSRDFQE 709

[Close]

BLAST of PI0001611 vs. NCBI nr
Match: KAA0036947.1 (uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.2e-59
Identity = 118/161 (73.29%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1   MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
           M+E  +DEV+KPH+ K+EVMTTR+M  G  SLN++LE LLK+ SN+GRFGLGYKPS+YDK
Sbjct: 794 MMEATVDEVIKPHKSKVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDK 853

Query: 61  IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
           IRLQEEKKKKRLAK +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LL KMESL 
Sbjct: 854 IRLQEEKKKKRLAKLEMREFDPSVKLIPELYDTFKSAGISYSSDNSDLKDDLLTKMESLS 913

Query: 121 IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
           +A VA E SFEG+TVYACPPDFELN  D VDLPTFSR+FQE
Sbjct: 914 VAVVAQEASFEGNTVYACPPDFELNNWDSVDLPTFSRDFQE 954

[Close]

BLAST of PI0001611 vs. NCBI nr
Match: KAA0063218.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK13470.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 7.2e-59
Identity = 120/161 (74.53%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1   MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
           +I  A+DEV KPHR K+E+MTTR+M++G  SLNQ+L+ LLK  SN+GRFGLGYKPS+YDK
Sbjct: 347 VIHVAVDEVKKPHRFKVEIMTTRIMREGY-SLNQNLDTLLKSPSNDGRFGLGYKPSIYDK 406

Query: 61  IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
           IRLQEE KKKRLAK +M++FDP LKFIP LYDTFKSA ISYSS++S+ KD LL KMESLL
Sbjct: 407 IRLQEENKKKRLAKLEMRDFDPSLKFIPVLYDTFKSARISYSSNNSDLKDGLLTKMESLL 466

Query: 121 IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
           +AAVA E SFEG+ VYACPPDFELN  DIVDLPTFSREFQE
Sbjct: 467 VAAVAQEASFEGNIVYACPPDFELNNWDIVDLPTFSREFQE 506

[Close]

BLAST of PI0001611 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 116/161 (72.05%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1    MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
            M+E  +DEV+KPH+ K+EVMTTR+M  G  SLN++LE LLK+ SN+GRFGLGYKPS+YDK
Sbjct: 932  MMEATVDEVIKPHKSKVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDK 991

Query: 61   IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
            IRLQE+KKKKRLAK +M+EFDP +K IP LYD FKSAGISYSSH+S+ KD LL KM SL 
Sbjct: 992  IRLQEKKKKKRLAKLEMREFDPSIKLIPELYDIFKSAGISYSSHNSDLKDDLLTKMGSLS 1051

Query: 121  IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
            +AAVA E SFEG+TVYACPPDFELN  D VDLPTFSR+FQ+
Sbjct: 1052 VAAVAQEASFEGNTVYACPPDFELNNWDSVDLPTFSRDFQD 1092

[Close]

BLAST of PI0001611 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 116/161 (72.05%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1    MIEEAIDEVVKPHRPKIEVMTTRMMKDGRPSLNQSLELLLKMSSNEGRFGLGYKPSVYDK 60
            M+E  +DEV+KPH+ K+EVMTTR+M  G  SLN++LE LLK+ SN+GRFGLGYKPS+YDK
Sbjct: 1349 MMEATVDEVIKPHKSKVEVMTTRIMGGGGYSLNKNLETLLKIPSNDGRFGLGYKPSIYDK 1408

Query: 61   IRLQEEKKKKRLAKQDMKEFDPGLKFIPALYDTFKSAGISYSSHDSNSKDCLLMKMESLL 120
            IRLQE+KKKKRL K +M+EFDP +K IP LYDTFKSAGISYSS +S+ KD LL KMESL 
Sbjct: 1409 IRLQEKKKKKRLVKLEMREFDPSIKLIPELYDTFKSAGISYSSDNSDLKDDLLTKMESLS 1468

Query: 121  IAAVAPETSFEGDTVYACPPDFELNKLDIVDLPTFSREFQE 162
            +AAVA E SFEG+TVYACPPDFELN  D VDLPTFSR+FQ+
Sbjct: 1469 VAAVAQEASFEGNTVYACPPDFELNNWDSVDLPTFSRDFQD 1509

The following BLAST results are available for this feature:

BLAST of PI0001611 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UM01	1.6e-59	76.62	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717...	[more]
A0A5A7T5W2	1.6e-59	73.29	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V6I2	3.5e-59	74.53	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556...	[more]
A0A5D3DEB3	7.8e-59	72.05	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T1W2	7.8e-59	72.05	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0001611 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055607.1	3.2e-59	76.62	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK24460.1 Gag-pro-like protein...	[more]
KAA0036947.1	3.2e-59	73.29	uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]	[more]
KAA0063218.1	7.2e-59	74.53	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK13470.1 Gag-pro-like protein...	[more]
TYK21788.1	1.6e-58	72.05	uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]	[more]
KAA0036933.1	1.6e-58	72.05	uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]	[more]

BLAST of PI0001611 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001611.1	PI0001611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity