PI0001591 (gene) Melon (PI 482460) v1

Overview


Name	PI0001591
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	chr10: 12351627 .. 12351893 (-)
RNA-Seq Expression	PI0001591
Synteny	PI0001591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTCAATGATCAGGAAATCAAGTTCAATGTCTTTGACGTGTTGAAATTCCCCGAGGATGCTGAAAACTACAATGCCATTGAATCCCTTGGATGGGATTATTGCGAGGAAAATTTGATTGCCAAATTGTTCAGCCCTGAAGAATTCAATTTTGAGTTTTCCAAAGGCGTTCTAAAAGAAGTAAACGTCGTGTCTGACGTGAGGAAGTTTGAACCTTTAGATCTGCAAACCAAAGGTGAGAAGAAAATAAAACCATCAATATAG

mRNA sequence

ATGCGGTTCAATGATCAGGAAATCAAGTTCAATGTCTTTGACGTGTTGAAATTCCCCGAGGATGCTGAAAACTACAATGCCATTGAATCCCTTGGATGGGATTATTGCGAGGAAAATTTGATTGCCAAATTGTTCAGCCCTGAAGAATTCAATTTTGAGTTTTCCAAAGGCGTTCTAAAAGAAGTAAACGTCGTGTCTGACGTGAGGAAGTTTGAACCTTTAGATCTGCAAACCAAAGGTGAGAAGAAAATAAAACCATCAATATAG

Coding sequence (CDS)

ATGCGGTTCAATGATCAGGAAATCAAGTTCAATGTCTTTGACGTGTTGAAATTCCCCGAGGATGCTGAAAACTACAATGCCATTGAATCCCTTGGATGGGATTATTGCGAGGAAAATTTGATTGCCAAATTGTTCAGCCCTGAAGAATTCAATTTTGAGTTTTCCAAAGGCGTTCTAAAAGAAGTAAACGTCGTGTCTGACGTGAGGAAGTTTGAACCTTTAGATCTGCAAACCAAAGGTGAGAAGAAAATAAAACCATCAATATAG

Protein sequence

MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEEFNFEFSKGVLKEVNVVSDVRKFEPLDLQTKGEKKIKPSI

Homology

[Close]

BLAST of PI0001591 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.3e-19
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEE-FNFEFSKGVL 60
           M+ NDQ++ FNV + +KFP DA+NYN I+ LGWDYCEE + AKLFS EE F  E  + +L
Sbjct: 245 MQLNDQKVTFNVVNAMKFPSDAKNYNKIKFLGWDYCEEEVFAKLFSLEEFFEDENPQDIL 304

Query: 61  KEVNVVSDVRKFEPLDLQTK 80
           +EVNVVSD RK +PLDLQTK
Sbjct: 305 EEVNVVSDTRKLKPLDLQTK 324

[Close]

BLAST of PI0001591 vs. ExPASy TrEMBL
Match: A0A5D3BYK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00360 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.6e-19
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1   MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEEFNFEFSKG-VL 60
           M FND+EIKFN+ +V+KFP D EN +AIES  WDYCEE    +LFS  EF  E     +L
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  KEVNVVSDVRKFEPLDLQTKGEKKIKPSI 89
           +EVN VSD  KFE LDLQTK EKK K SI
Sbjct: 136 EEVNPVSDENKFESLDLQTKDEKKTKSSI 164

[Close]

BLAST of PI0001591 vs. ExPASy TrEMBL
Match: A0A5A7UE99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00340 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1   MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEE-FNFEFSKGVL 60
           M FND+EIKFN +  +KFP +   YNAIESLGWDYC+E    +LFS EE F  E    +L
Sbjct: 76  MCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYIL 135

Query: 61  KEVNVVSDVRKFEPLDLQTKGEKKIKPSI 89
           +EVNV+    KFE LDL+TKG+KKIK SI
Sbjct: 136 EEVNVMLGKTKFESLDLKTKGKKKIKSSI 164

[Close]

BLAST of PI0001591 vs. ExPASy TrEMBL
Match: A0A5D3DFH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00860 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 4   NDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEEFNFEFSKGVLKEVN 63
           N +E+KFNV + LKFP++ ENYN IESL W             P+EF+ +  +G+++EV 
Sbjct: 90  NQEEVKFNVVNALKFPDNVENYNVIESLRWGIIVRKKSLARCCPKEFDVKLLEGIMEEVK 149

Query: 64  VVSDVRKFEPLDLQTKGEKKIKPSI 89
           VVSD RK EPLDLQTKG KK KPSI
Sbjct: 150 VVSDTRKLEPLDLQTKGNKKTKPSI 174

[Close]

BLAST of PI0001591 vs. ExPASy TrEMBL
Match: A0A5D3BLQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00420 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEE-FNFEFSKGVL 60
          M FND+E+KFNV + + F  D ENY+ IESLGWDY EE    KL S E  F  E    +L
Sbjct: 1  MCFNDEEVKFNVVNEMTFSADDENYSVIESLGWDYREEEAYHKLSSIENFFEGEGPSHIL 60

Query: 61 KEVNVVSDVRKFEPLDLQTKGEKKIKPSI 89
          +E+N+V   RKFE LDLQTKGEKK  PSI
Sbjct: 61 EELNIVFSERKFETLDLQTKGEKKTMPSI 89

[Close]

BLAST of PI0001591 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-19
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEE-FNFEFSKGVL 60
           M+ NDQ++ FNV + +KFP DA+NYN I+ LGWDYCEE + AKLFS EE F  E  + +L
Sbjct: 245 MQLNDQKVTFNVVNAMKFPSDAKNYNKIKFLGWDYCEEEVFAKLFSLEEFFEDENPQDIL 304

Query: 61  KEVNVVSDVRKFEPLDLQTK 80
           +EVNVVSD RK +PLDLQTK
Sbjct: 305 EEVNVVSDTRKLKPLDLQTK 324

[Close]

BLAST of PI0001591 vs. NCBI nr
Match: KAA0066655.1 (uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK04098.1 uncharacterized protein E5676_scaffold2119G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1   MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEEFNFEFSKG-VL 60
           M FND+EIKFN+ +V+KFP D EN +AIES  WDYCEE    +LFS  EF  E     +L
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  KEVNVVSDVRKFEPLDLQTKGEKKIKPSI 89
           +EVN VSD  KFE LDLQTK EKK K SI
Sbjct: 136 EEVNPVSDENKFESLDLQTKDEKKTKSSI 164

[Close]

BLAST of PI0001591 vs. NCBI nr
Match: KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1   MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEE-FNFEFSKGVL 60
           M FND+EIKFN +  +KFP +   YNAIESLGWDYC+E    +LFS EE F  E    +L
Sbjct: 76  MCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYIL 135

Query: 61  KEVNVVSDVRKFEPLDLQTKGEKKIKPSI 89
           +EVNV+    KFE LDL+TKG+KKIK SI
Sbjct: 136 EEVNVMLGKTKFESLDLKTKGKKKIKSSI 164

[Close]

BLAST of PI0001591 vs. NCBI nr
Match: TYK22208.1 (uncharacterized protein E5676_scaffold333G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 4   NDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEEFNFEFSKGVLKEVN 63
           N +E+KFNV + LKFP++ ENYN IESL W             P+EF+ +  +G+++EV 
Sbjct: 90  NQEEVKFNVVNALKFPDNVENYNVIESLRWGIIVRKKSLARCCPKEFDVKLLEGIMEEVK 149

Query: 64  VVSDVRKFEPLDLQTKGEKKIKPSI 89
           VVSD RK EPLDLQTKG KK KPSI
Sbjct: 150 VVSDTRKLEPLDLQTKGNKKTKPSI 174

[Close]

BLAST of PI0001591 vs. NCBI nr
Match: KAA0054794.1 (hypothetical protein E6C27_scaffold437G00790 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.2e-16
Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MRFNDQEIKFNVFDVLKFPEDAENYNAIESLGWDYCEENLIAKLFSPEE-FNFEFSKGVL 60
          M FND+E+KFNV + + F  D ENY+ IESLGWDY EE    KL S E  F  E    +L
Sbjct: 1  MCFNDEEVKFNVVNEMTFSADDENYSVIESLGWDYREEEAYHKLSSIENFFEGEGPSHIL 60

Query: 61 KEVNVVSDVRKFEPLDLQTKGEKKIKPSI 89
          +E+N+V   RKFE LDLQTKGEKK  PSI
Sbjct: 61 EELNIVFSERKFESLDLQTKGEKKTMPSI 89

The following BLAST results are available for this feature:

BLAST of PI0001591 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2P4	3.3e-19	62.50	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BYK3	5.6e-19	60.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UE99	1.4e-17	58.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFH0	5.3e-17	54.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BLQ8	1.5e-16	57.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0001591 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047821.1	6.8e-19	62.50	uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]	[more]
KAA0066655.1	1.2e-18	60.67	uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0054122.1	2.9e-17	58.43	uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa]	[more]
TYK22208.1	1.1e-16	54.12	uncharacterized protein E5676_scaffold333G00860 [Cucumis melo var. makuwa]	[more]
KAA0054794.1	3.2e-16	57.30	hypothetical protein E6C27_scaffold437G00790 [Cucumis melo var. makuwa]	[more]

BLAST of PI0001591 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001591.1	PI0001591.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity