PI0001584 (gene) Melon (PI 482460) v1

Overview
NamePI0001584
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr11: 18140455 .. 18143352 (-)
RNA-Seq ExpressionPI0001584
SyntenyPI0001584
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCAGCTTCGAAATGTCAACAAACATCAATTAGTTGGAAAGGCCAATGGTTCACGGTATGTTGTTTAAATTTCATTTAGATTAACCAATTTCTTTTGTACAACTAATTATAGTTAATCTTAATCTAAATATTAATCGAATATTACAAATGGAGAGATCAATTTCGTGTGACTATATCTGCTACACATGTTGTGTCAGTATATGTACATGTTTGACCTTCTTCAACTTGACCAGGTATGTGAATGTCGTGTATGAATATTATGTTTCATATTATTTGTTTTAATATAATATGTTATGTTTCTGATTATTTGGGAATCATACAAAACTGTCATGGACGGTTTGCATAATTTCTGTACCAACAGTCAAGACATATGACGGACGGTTAGTCCACTCATATGTTTTCACATTGGTGAGTGACATCATTCTGATAGAGCAATCAGACAATTTGGTCTCAAACAAGATGTTCCACCGGATTGTAATACTGAGCCACTATTGCATTATATCGACTTGAGAACTGTGGATTGGTCGGATAGAGTTGCACATCTGATTATGCGATGACTAAATCGCAGAAGATTTATTGTTATGGGACCTACAATTGATCAATTCGATAATGTAACTGAGGAATACATCTATTGGTATAAAAATATTACAAGGCTCTACATTACTAGACCAAGAGCAATTGTGGGTCATCTGGTACATGTTTAAATATTGTATAATTATTTTAGATATTATTTATTTTAAATATTTTGTAATTTATTTTAATATTTCATAGAGATCGAACAATAGTAGACTTTGTGATGTGGCAGATGATCCACAGTAGGTTCTTAATATATGCAACGAAAACAAGCGGTACATGGAGAATATACATTATATGTATGATGTACCCATTGTACCAGCACTAGCCCAAAGGAGACATACTCAAGTGTAAGAGTCTGAGTTTGATGAGCTTAACCATCATGTGGAAGAAGTGCCTCCTGGACACAAACACAAAATGAAGCTGGTTATGTCCGTCCAATGATGATGATGTCAGCCTTTGGTACGAGCTATTATCCTAGTCAATCATCATACTTTGAATCAGGATATTACAATTCAGAGGTTGATCCATCATCGTCAAACTTTGGAACAAAATATTACGATTTAGGGACCGACCAATCATCTTCACACATGCATCGACATGGACGCGGTCGTGGTGAAACACCACCAGTGGTACTTGAACAACTAAAGAACCAACAACAACCAGAGAATGAGGAGGCACTAGAACATCAAAGAGTTCAGAGTCGACGATTAGATCGAAATCGACGACGTCTGGGTTGTAGGACACATTAATTTTTTTAGTTTTTAAATTAATGAAAATTATTAAATTATCGTAATAATATAAACATTCTAATTCGTATTTAATTATTTTTCAAGTATAAACAATTACTAAAAAATAAACCGTAAATTTCCCAAGAAATTAATTTAATATAAAACATATGAATTACAACTATAAATTTTCATTCCGTATTAGCATGAACTATATCTATTACAAAATTAAACTTTCACTTAAATGGATAATTAACTGTAAATTAAAAAACCAATTTAAAAAATTGAAAAAAATATATAAACGACTTAACAATTAATTTTAGTTGAAAATTAAAAGAAAATGAATTCTTAAAAATTTAAAGAAAAGAAATTAAAAAATGAATTTTTTTTATAAAAAAGAAAAGAAAAGAAATTACAAAATGAATTTTTTTTTTAAAAAAAAGAAAAGCATGGACGAGTGTGCATGATAAAGGAACTACCTCAATCACGTTTGCGAACTCCCCTATTTTAGGTGAACCCCCACAACAGTAATAAGAATAACCCCAAATAACAAGATGATAAACAACCCCAAGAAAGCTAAAACAGATTTGGCTTGGAAGATTGATCAAATATCAGGAAGAAAGGAGAACTTGTTCCTGCCTTCAAGATTTTGAACTCTCCACAATCTAATTGATCAGACTAGATTGAAAGTCCTAAGCACGCATTCTAAACACAAGAATACAAAGATAAAGCATAAAGCTTGAGAGATAAAAACTCTATGAAGATTTCATTCCAATTCTCCCCTAAAATGTGAAACTACAATCTATTTATACTAATTGAAAAGGCTACATGAAAGGTCACAATATTTAATTTTAAGACCTTTCAACTACATATATGAACTTTCATAAATTTAAATACATTGCAATAAATTGATTCATCAAGTATTAAATATGTGAATGAATTTGAATTTTCAAATTCATTGTGGCTTTTGGATGACCTTGAACCTTGTTTGCTTCTTAAAAGTTTGCTCCATTACCTAGTCACACTTGTTTTCTACATTTGAGATTTTTGTGACTTTCCACCTTCTAGCTAAATTGACATTGTTCTTATATGATTCTTATAAGAATACTATAAGACTTGCTGAAGTTTAAGAATTTTTCTATTCTTAGGAGTAAACAAATAAATTTAGTGAGTGCAAACACGAGTGATCTTTCATCTTCTAAAGAGTAATCACGTAAGGGAGTGTTGGTGAGGTCCATTTTTTTTTCCTTTACTTTGTTTTTCTTTTGTAGGATGGACAATCAAAATGATGAAGTACGATTAAGAGAGGCACAACAAGGAGTTATTGCACAAATAATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTGGAGATTGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTTTAGCACAGCATGTGGTAATTAACCGTAATGACAACCAATATGAGGGTGATGGTTCTGATGGTTTAGACGATGACCAAGTTACATTACTTGGGGAGCCAAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCATGGAAGAACTTATCAAAACATCCAAAGGAGAGCTTAA

mRNA sequence

ATGGCTTCTCAGCTTCGAAATGTCAACAAACATCAATTAGTTGGAAAGGCCAATGGTTCACGGATGGACAATCAAAATGATGAAGTACGATTAAGAGAGGCACAACAAGGAGTTATTGCACAAATAATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTGGAGATTGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTTTAGCACAGCATGTGGTAATTAACCGTAATGACAACCAATATGAGGGTGATGGTTCTGATGGTTTAGACGATGACCAAGTTACATTACTTGGGGAGCCAAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCATGGAAGAACTTATCAAAACATCCAAAGGAGAGCTTAA

Coding sequence (CDS)

ATGGCTTCTCAGCTTCGAAATGTCAACAAACATCAATTAGTTGGAAAGGCCAATGGTTCACGGATGGACAATCAAAATGATGAAGTACGATTAAGAGAGGCACAACAAGGAGTTATTGCACAAATAATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTGGAGATTGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTTTAGCACAGCATGTGGTAATTAACCGTAATGACAACCAATATGAGGGTGATGGTTCTGATGGTTTAGACGATGACCAAGTTACATTACTTGGGGAGCCAAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCATGGAAGAACTTATCAAAACATCCAAAGGAGAGCTTAA

Protein sequence

MASQLRNVNKHQLVGKANGSRMDNQNDEVRLREAQQGVIAQIISSMEALTDRLDRLEIENRARERMPPPLAQHVVINRNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGHGRTYQNIQRRA
Homology
[Close]
BLAST of PI0001584 vs. ExPASy TrEMBL
Match: A0A5A7TK52 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001000 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.8e-40
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 22  MDNQNDEVRLREAQQGVIAQIISSMEALTDRLDRLEIENRARERMPPPLAQHVVINRNDN 81
           M+NQNDEV+LREAQQGVIA++IS+MEALTDRL+R EIENRARERMPPPLA  ++IN NDN
Sbjct: 1   MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDN 60

Query: 82  QYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGHGRTYQNIQRRA 127
           Q EGDGSD LDDDQVTLLGEPRRVGHGVVR RG GR YQNIQRRA
Sbjct: 61  QDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRA 105

[Close]
BLAST of PI0001584 vs. ExPASy TrEMBL
Match: A0A5D3CHG3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001250 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 42  IISSMEALTDRLDRLEIENRARERMPPPLAQHVVINRNDNQYEGDGSDGLDDDQVTLLGE 101
           +IS+MEALTDRL+R EIENRARERMPPPLA  ++IN NDNQ EGDGSD LDDDQVTLLGE
Sbjct: 1   MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGE 60

Query: 102 PRRVGHGVVRGRGHGRTYQNIQRRA 127
           PRRVGHGVVR RG GR YQNIQRRA
Sbjct: 61  PRRVGHGVVRRRGRGRAYQNIQRRA 85

[Close]
BLAST of PI0001584 vs. ExPASy TrEMBL
Match: A0A5A7TYI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00200 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 46  MEALTDRLDRLEIENRARERMPPPLAQHVVINRNDNQYEGDGSDGLDDDQVTLLGEPRRV 105
           MEALTDRL+RLEIENRARERMPPPLA  + IN N+NQYEGDG D LDDDQVTLL EPRRV
Sbjct: 1   MEALTDRLERLEIENRARERMPPPLAPLMAINHNNNQYEGDGLDDLDDDQVTLLVEPRRV 60

Query: 106 GHGVVRGRGHGRTYQNIQRR 126
           GHGVVR RGHG+ YQNIQRR
Sbjct: 61  GHGVVRRRGHGKAYQNIQRR 80

[Close]
BLAST of PI0001584 vs. ExPASy TrEMBL
Match: A0A5A7T993 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001470 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 66  MPPPLAQHVVINRNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGHGRTYQNIQRR 125
           MPPP A  +VIN NDNQ EGDGSDGLDDDQVTLL E RR GH VVR +G GR YQNIQRR
Sbjct: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60

Query: 126 A 127
           A
Sbjct: 61  A 61

[Close]
BLAST of PI0001584 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.4e-16
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 0 

Query: 28  EVRLREAQQGVIAQIISSMEALTDRLDRLEIENRARERMPPPLAQHVVINRNDNQYEGDG 87
           + R REA +G + ++I SMEALT+R+ RLE +N+A  R+PPP    V+   ++++YEGDG
Sbjct: 12  DARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVM---DEDEYEGDG 71

Query: 88  SDGLDDDQVTLLGEPR----RVGHGVVRGRGHGRTYQNIQR 125
           SD  +DDQ T+L  PR     VG G+ RGRG GR Y N QR
Sbjct: 72  SDHWEDDQATVLAXPRGGDXHVGXGLDRGRGRGRGYHNFQR 109

[Close]
BLAST of PI0001584 vs. NCBI nr
Match: KAA0043652.1 (uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 5.9e-40
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 22  MDNQNDEVRLREAQQGVIAQIISSMEALTDRLDRLEIENRARERMPPPLAQHVVINRNDN 81
           M+NQNDEV+LREAQQGVIA++IS+MEALTDRL+R EIENRARERMPPPLA  ++IN NDN
Sbjct: 1   MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDN 60

Query: 82  QYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGHGRTYQNIQRRA 127
           Q EGDGSD LDDDQVTLLGEPRRVGHGVVR RG GR YQNIQRRA
Sbjct: 61  QDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRA 105

[Close]
BLAST of PI0001584 vs. NCBI nr
Match: TYK09709.1 (uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-30
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0 

Query: 42  IISSMEALTDRLDRLEIENRARERMPPPLAQHVVINRNDNQYEGDGSDGLDDDQVTLLGE 101
           +IS+MEALTDRL+R EIENRARERMPPPLA  ++IN NDNQ EGDGSD LDDDQVTLLGE
Sbjct: 1   MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGE 60

Query: 102 PRRVGHGVVRGRGHGRTYQNIQRRA 127
           PRRVGHGVVR RG GR YQNIQRRA
Sbjct: 61  PRRVGHGVVRRRGRGRAYQNIQRRA 85

[Close]
BLAST of PI0001584 vs. NCBI nr
Match: KAA0047036.1 (uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.3e-28
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 46  MEALTDRLDRLEIENRARERMPPPLAQHVVINRNDNQYEGDGSDGLDDDQVTLLGEPRRV 105
           MEALTDRL+RLEIENRARERMPPPLA  + IN N+NQYEGDG D LDDDQVTLL EPRRV
Sbjct: 1   MEALTDRLERLEIENRARERMPPPLAPLMAINHNNNQYEGDGLDDLDDDQVTLLVEPRRV 60

Query: 106 GHGVVRGRGHGRTYQNIQRR 126
           GHGVVR RGHG+ YQNIQRR
Sbjct: 61  GHGVVRRRGHGKAYQNIQRR 80

[Close]
BLAST of PI0001584 vs. NCBI nr
Match: KAA0038045.1 (uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK20558.1 uncharacterized protein E5676_scaffold237G001470 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.7e-16
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 66  MPPPLAQHVVINRNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGHGRTYQNIQRR 125
           MPPP A  +VIN NDNQ EGDGSDGLDDDQVTLL E RR GH VVR +G GR YQNIQRR
Sbjct: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60

Query: 126 A 127
           A
Sbjct: 61  A 61

[Close]
BLAST of PI0001584 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 0 

Query: 28  EVRLREAQQGVIAQIISSMEALTDRLDRLEIENRARERMPPPLAQHVVINRNDNQYEGDG 87
           + R REA +G + ++I SMEALT+R+ RLE +N+A  R+PPP    V+   ++++YEGDG
Sbjct: 12  DARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVM---DEDEYEGDG 71

Query: 88  SDGLDDDQVTLLGEPR----RVGHGVVRGRGHGRTYQNIQR 125
           SD  +DDQ T+L  PR     VG G+ RGRG GR Y N QR
Sbjct: 72  SDHWEDDQATVLAXPRGGDXHVGXGLDRGRGRGRGYHNFQR 109

The following BLAST results are available for this feature:
BLAST of PI0001584 vs.
Match NameE-valueIdentityDescription
BLAST of PI0001584 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TK522.8e-4083.81Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CHG31.2e-3083.53Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TYI01.1e-2883.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T9933.7e-1677.05Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1DWE96.4e-1649.50LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia... [more]
BLAST of PI0001584 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043652.15.9e-4083.81uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa][more]
TYK09709.12.5e-3083.53uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa][more]
KAA0047036.12.3e-2883.75uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa][more]
KAA0038045.17.7e-1677.05uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK2... [more]
XP_022157414.11.3e-1549.50LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia][more]
BLAST of PI0001584 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0001584.1PI0001584.1mRNA