PI0001552 (gene) Melon (PI 482460) v1

Overview


Name	PI0001552
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr07: 11728553 .. 11728918 (-)
RNA-Seq Expression	PI0001552
Synteny	PI0001552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGGCATGTCCCCATCATTGCATCCCTGGATGTGTCTTGATGGAACAGTTTTATTTTGGGTTGAGTGAGGATACACAGCAGACGACTGATGTTATATTTGAAGGAGGGATGCTTAGAAGCTCCTATAACCAGATAAAATATATGTTGGGCGCTATGGCTAGCAATAGTCAAGAATGGCGAGATGGTGGTTTTGGCTCTCGACAAGAGAACAGAGGAAATAGAGGAAAAACAGACAGGATTGAGGAAGGAGTGGACAAGAATACGATGTTGGCACTTCAAAGACAAGTCACCGAGATGAACAAGCTTCTACAATCTACAACATTATCGCAAGTAAATGCGTGGGAAGTTCTGTTCACGTGA

mRNA sequence

ATGGTGAAGGCATGTCCCCATCATTGCATCCCTGGATGTGTCTTGATGGAACAGTTTTATTTTGGGTTGAGTGAGGATACACAGCAGACGACTGATGTTATATTTGAAGGAGGGATGCTTAGAAGCTCCTATAACCAGATAAAATATATGTTGGGCGCTATGGCTAGCAATAGTCAAGAATGGCGAGATGGTGGTTTTGGCTCTCGACAAGAGAACAGAGGAAATAGAGGAAAAACAGACAGGATTGAGGAAGGAGTGGACAAGAATACGATGTTGGCACTTCAAAGACAAGTCACCGAGATGAACAAGCTTCTACAATCTACAACATTATCGCAAGTAAATGCGTGGGAAGTTCTGTTCACGTGA

Coding sequence (CDS)

ATGGTGAAGGCATGTCCCCATCATTGCATCCCTGGATGTGTCTTGATGGAACAGTTTTATTTTGGGTTGAGTGAGGATACACAGCAGACGACTGATGTTATATTTGAAGGAGGGATGCTTAGAAGCTCCTATAACCAGATAAAATATATGTTGGGCGCTATGGCTAGCAATAGTCAAGAATGGCGAGATGGTGGTTTTGGCTCTCGACAAGAGAACAGAGGAAATAGAGGAAAAACAGACAGGATTGAGGAAGGAGTGGACAAGAATACGATGTTGGCACTTCAAAGACAAGTCACCGAGATGAACAAGCTTCTACAATCTACAACATTATCGCAAGTAAATGCGTGGGAAGTTCTGTTCACGTGA

Protein sequence

MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQEWRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVNAWEVLFT

Homology

[Close]

BLAST of PI0001552 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.8e-34
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           M+K CPHHCIP CVLMEQFYFGLS++T Q+ +++F GGMLRSSYNQIK ML  MASNSQE
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVN 115
           WRD  FGSR ++RG +G   RIE+G+D + M+ALQ QV EMN +LQS  L QVN
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMALLQVN 133

[Close]

BLAST of PI0001552 vs. ExPASy TrEMBL
Match: A0A0A0L0Y4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.7e-30
Identity = 72/115 (62.61%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           M+K C HH I GCV++EQFYFGLS DTQQ  D +F GGMLR S N IK  L AM SNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVNA 116
           WRD  FGS  E++GNR +  R  +G + N M+ LQ QVTEMNKLLQS  LSQ+NA
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNA 115

[Close]

BLAST of PI0001552 vs. ExPASy TrEMBL
Match: A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 69/105 (65.71%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           +VKAC HH I  CVLME+FYF LSED QQT DV+F GG+LR+SYNQ K ML  M SNSQE
Sbjct: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLL 106
            RD    S+QEN  NRG+TD   EG+D+N M+ LQ QVTEMNKLL
Sbjct: 98  CRDDCISSQQENGENRGRTD---EGMDRNAMVTLQGQVTEMNKLL 139

[Close]

BLAST of PI0001552 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-26
Identity = 70/115 (60.87%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           +VKACP H IP CV ME FYFGLS+DT Q  + +F GGMLRSSYNQIK  L +M++NSQE
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVNA 116
           W D GFGSR     +RG+T   +EG+DK+ ++ LQ Q+  MN LLQS TLSQVNA
Sbjct: 81  WDDIGFGSR-----HRGRT---KEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNA 127

[Close]

BLAST of PI0001552 vs. ExPASy TrEMBL
Match: A0A5A7TRQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00190 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.7e-21
Identity = 61/114 (53.51%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           M+K CPHHCIP  VLMEQF F LSEDTQQT                           + E
Sbjct: 1   MIKTCPHHCIPEYVLMEQFNFRLSEDTQQT---------------------------ANE 60

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVN 115
           WRD GFG  +ENRGNRG TD+I+EGVD+NT + LQ +V EMNKLLQS  L+Q N
Sbjct: 61  WRDDGFGLLKENRGNRGNTDKIDEGVDRNTTVVLQGKVNEMNKLLQSMVLAQNN 87

[Close]

BLAST of PI0001552 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 7.9e-34
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           M+K CPHHCIP CVLMEQFYFGLS++T Q+ +++F GGMLRSSYNQIK ML  MASNSQE
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVN 115
           WRD  FGSR ++RG +G   RIE+G+D + M+ALQ QV EMN +LQS  L QVN
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMALLQVN 133

[Close]

BLAST of PI0001552 vs. NCBI nr
Match: KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-29
Identity = 72/115 (62.61%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           M+K C HH I GCV++EQFYFGLS DTQQ  D +F GGMLR S N IK  L AM SNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVNA 116
           WRD  FGS  E++GNR +  R  +G + N M+ LQ QVTEMNKLLQS  LSQ+NA
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNA 115

[Close]

BLAST of PI0001552 vs. NCBI nr
Match: KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.7e-26
Identity = 69/105 (65.71%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           +VKAC HH I  CVLME+FYF LSED QQT DV+F GG+LR+SYNQ K ML  M SNSQE
Sbjct: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLL 106
            RD    S+QEN  NRG+TD   EG+D+N M+ LQ QVTEMNKLL
Sbjct: 98  CRDDCISSQQENGENRGRTD---EGMDRNAMVTLQGQVTEMNKLL 139

[Close]

BLAST of PI0001552 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.0e-26
Identity = 70/115 (60.87%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           +VKACP H IP CV ME FYFGLS+DT Q  + +F GGMLRSSYNQIK  L +M++NSQE
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVNA 116
           W D GFGSR     +RG+T   +EG+DK+ ++ LQ Q+  MN LLQS TLSQVNA
Sbjct: 81  WDDIGFGSR-----HRGRT---KEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNA 127

[Close]

BLAST of PI0001552 vs. NCBI nr
Match: KAA0044261.1 (uncharacterized protein E6C27_scaffold2741G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-21
Identity = 61/114 (53.51%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 1   MVKACPHHCIPGCVLMEQFYFGLSEDTQQTTDVIFEGGMLRSSYNQIKYMLGAMASNSQE 60
           M+K CPHHCIP  VLMEQF F LSEDTQQT                           + E
Sbjct: 1   MIKTCPHHCIPEYVLMEQFNFRLSEDTQQT---------------------------ANE 60

Query: 61  WRDGGFGSRQENRGNRGKTDRIEEGVDKNTMLALQRQVTEMNKLLQSTTLSQVN 115
           WRD GFG  +ENRGNRG TD+I+EGVD+NT + LQ +V EMNKLLQS  L+Q N
Sbjct: 61  WRDDGFGLLKENRGNRGNTDKIDEGVDRNTTVVLQGKVNEMNKLLQSMVLAQNN 87

The following BLAST results are available for this feature:

BLAST of PI0001552 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CC26	3.8e-34	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L0Y4	9.7e-30	62.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1	[more]
A0A5A7TUE1	1.3e-26	65.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K6F9	2.9e-26	60.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1	[more]
A0A5A7TRQ0	3.7e-21	53.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0001552 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048713.1	7.9e-34	66.67	hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916...	[more]
KGN53801.1	2.0e-29	62.61	hypothetical protein Csa_014772 [Cucumis sativus]	[more]
KAA0046468.1	2.7e-26	65.71	hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774...	[more]
KGN44484.1	6.0e-26	60.87	hypothetical protein Csa_015918 [Cucumis sativus]	[more]
KAA0044261.1	7.6e-21	53.51	uncharacterized protein E6C27_scaffold2741G00190 [Cucumis melo var. makuwa]	[more]

BLAST of PI0001552 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001552.1	PI0001552.1	mRNA