PI0001511 (gene) Melon (PI 482460) v1

Overview


Name	PI0001511
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr06: 23210435 .. 23210881 (-)
RNA-Seq Expression	PI0001511
Synteny	PI0001511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAACTTTAGGGGCAGTGGCTTATCGTTTGGAGCTACCTTCTGGGGCCGCTATACACAATGTATTTCATATATCCCAACTTAAGTTTAAGTTGGGACGTAATCAAAAGGTGCAACATATGCCTCCGACACTAACTGAAGATTTTGAGCTGGAAGTATTACTAGAATCTGTTTTGGGGATCCGTTGGCATAGTGAGCTAAGAGCCAATAAGTGGTTGGTGAAATGGAAGGGCTACCCCGAAAGCGAAGCATCTTGGGAATCAGTCTATTTAATGAACAAACAATTTCCTTTGTTCCACATTGAAGACAATGTGCAATTTGAAGCAAGCGGAACTGTTAGACCTCCTATTATTCACACCTACAGAAGAAGGAAGGCAGGATGGGGTATAATGGGAAATACACAGAGGATAAAAAAAGATGATAATTTGGAGGGGACCCACTAG

mRNA sequence

ATGGTGGAAACTTTAGGGGCAGTGGCTTATCGTTTGGAGCTACCTTCTGGGGCCGCTATACACAATGTATTTCATATATCCCAACTTAAGTTTAAGTTGGGACGTAATCAAAAGGTGCAACATATGCCTCCGACACTAACTGAAGATTTTGAGCTGGAAGTATTACTAGAATCTGTTTTGGGGATCCGTTGGCATAGTGAGCTAAGAGCCAATAAGTGGTTGGTGAAATGGAAGGGCTACCCCGAAAGCGAAGCATCTTGGGAATCAGTCTATTTAATGAACAAACAATTTCCTTTGTTCCACATTGAAGACAATGTGCAATTTGAAGCAAGCGGAACTGTTAGACCTCCTATTATTCACACCTACAGAAGAAGGAAGGCAGGATGGGGTATAATGGGAAATACACAGAGGATAAAAAAAGATGATAATTTGGAGGGGACCCACTAG

Coding sequence (CDS)

ATGGTGGAAACTTTAGGGGCAGTGGCTTATCGTTTGGAGCTACCTTCTGGGGCCGCTATACACAATGTATTTCATATATCCCAACTTAAGTTTAAGTTGGGACGTAATCAAAAGGTGCAACATATGCCTCCGACACTAACTGAAGATTTTGAGCTGGAAGTATTACTAGAATCTGTTTTGGGGATCCGTTGGCATAGTGAGCTAAGAGCCAATAAGTGGTTGGTGAAATGGAAGGGCTACCCCGAAAGCGAAGCATCTTGGGAATCAGTCTATTTAATGAACAAACAATTTCCTTTGTTCCACATTGAAGACAATGTGCAATTTGAAGCAAGCGGAACTGTTAGACCTCCTATTATTCACACCTACAGAAGAAGGAAGGCAGGATGGGGTATAATGGGAAATACACAGAGGATAAAAAAAGATGATAATTTGGAGGGGACCCACTAG

Protein sequence

MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVLGIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIHTYRRRKAGWGIMGNTQRIKKDDNLEGTH

Homology

[Close]

BLAST of PI0001511 vs. ExPASy TrEMBL
Match: A0A5A7SUN8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00690 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.8e-44
Identity = 85/125 (68.00%), Postives = 103/125 (82.40%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 241 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 300

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW+ ELRAN+WL+KW+G PES+A+WESVY MN+QFP FH+ED V  E  G VRPPI+H
Sbjct: 301 GIRWNKELRANEWLIKWQGLPESDATWESVYQMNQQFPSFHLEDKVNVEPRGIVRPPILH 360

Query: 121 TYRRR 126
           TY+RR
Sbjct: 361 TYKRR 365

[Close]

BLAST of PI0001511 vs. ExPASy TrEMBL
Match: A0A5D3DZZ7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3695G00060 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.5e-43
Identity = 86/140 (61.43%), Postives = 108/140 (77.14%), Query Frame = 0


Query: 1    MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
            ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 1326 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 1385

Query: 61   GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
            GIRW+ EL AN+WL+KW+  PESEA+WESVY MN+QFP FH+ED V  E+ G VRPPI+H
Sbjct: 1386 GIRWNKELGANEWLIKWQSLPESEATWESVYQMNQQFPSFHLEDKVNVESRGIVRPPILH 1445

Query: 121  TYRRRKAGWGIMGNTQRIKK 141
            TYRR +    +  N ++ K+
Sbjct: 1446 TYRRARKVIQLDKNEEKEKR 1465

[Close]

BLAST of PI0001511 vs. ExPASy TrEMBL
Match: A0A5D3E0H6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00020 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.5e-43
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRLELP  AAIHNVFHISQLK KLG  Q VQ   P LTEDFEL++  E+VL
Sbjct: 47  IIEEIGAVAYRLELPPEAAIHNVFHISQLKPKLGNQQVVQRQHPMLTEDFELQLWPETVL 106

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW  EL AN+WL+KW+G PESEA+WES Y MN+QFP FH+ED V  E  G VRPPIIH
Sbjct: 107 GIRWSKELGANEWLIKWQGLPESEATWESTYQMNQQFPSFHLEDKVNVEPRGIVRPPIIH 166

Query: 121 TYRRR 126
           TY+RR
Sbjct: 167 TYKRR 171

[Close]

BLAST of PI0001511 vs. ExPASy TrEMBL
Match: A0A5A7TCB1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00920 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.5e-43
Identity = 84/125 (67.20%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 244 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 303

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW+ EL AN+WL+KW+G PES+A+WESVY MN+QFP FH+ED V  E  G VRPPI+H
Sbjct: 304 GIRWNKELGANEWLIKWQGLPESDATWESVYQMNQQFPSFHLEDKVNVEPRGIVRPPILH 363

Query: 121 TYRRR 126
           TY+RR
Sbjct: 364 TYKRR 368

[Close]

BLAST of PI0001511 vs. ExPASy TrEMBL
Match: A0A5A7TIE4 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001300 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.2e-43
Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 669 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 728

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW+  L AN+WL+KW+G PESEA+WESVY MN+QFP FH+ED V  E  G VRPPI+H
Sbjct: 729 GIRWNKVLGANEWLIKWQGLPESEATWESVYQMNQQFPSFHLEDKVNVEPRGIVRPPILH 788

Query: 121 TYRRR 126
           TY+RR
Sbjct: 789 TYKRR 793

[Close]

BLAST of PI0001511 vs. NCBI nr
Match: KAA0033666.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK22964.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 7.9e-44
Identity = 85/125 (68.00%), Postives = 103/125 (82.40%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 241 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 300

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW+ ELRAN+WL+KW+G PES+A+WESVY MN+QFP FH+ED V  E  G VRPPI+H
Sbjct: 301 GIRWNKELRANEWLIKWQGLPESDATWESVYQMNQQFPSFHLEDKVNVEPRGIVRPPILH 360

Query: 121 TYRRR 126
           TY+RR
Sbjct: 361 TYKRR 365

[Close]

BLAST of PI0001511 vs. NCBI nr
Match: TYK29412.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-43
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRLELP  AAIHNVFHISQLK KLG  Q VQ   P LTEDFEL++  E+VL
Sbjct: 47  IIEEIGAVAYRLELPPEAAIHNVFHISQLKPKLGNQQVVQRQHPMLTEDFELQLWPETVL 106

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW  EL AN+WL+KW+G PESEA+WES Y MN+QFP FH+ED V  E  G VRPPIIH
Sbjct: 107 GIRWSKELGANEWLIKWQGLPESEATWESTYQMNQQFPSFHLEDKVNVEPRGIVRPPIIH 166

Query: 121 TYRRR 126
           TY+RR
Sbjct: 167 TYKRR 171

[Close]

BLAST of PI0001511 vs. NCBI nr
Match: TYK28905.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-43
Identity = 86/140 (61.43%), Postives = 108/140 (77.14%), Query Frame = 0


Query: 1    MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
            ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 1326 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 1385

Query: 61   GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
            GIRW+ EL AN+WL+KW+  PESEA+WESVY MN+QFP FH+ED V  E+ G VRPPI+H
Sbjct: 1386 GIRWNKELGANEWLIKWQSLPESEATWESVYQMNQQFPSFHLEDKVNVESRGIVRPPILH 1445

Query: 121  TYRRRKAGWGIMGNTQRIKK 141
            TYRR +    +  N ++ K+
Sbjct: 1446 TYRRARKVIQLDKNEEKEKR 1465

[Close]

BLAST of PI0001511 vs. NCBI nr
Match: KAA0040538.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-43
Identity = 84/125 (67.20%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 244 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 303

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW+ EL AN+WL+KW+G PES+A+WESVY MN+QFP FH+ED V  E  G VRPPI+H
Sbjct: 304 GIRWNKELGANEWLIKWQGLPESDATWESVYQMNQQFPSFHLEDKVNVEPRGIVRPPILH 363

Query: 121 TYRRR 126
           TY+RR
Sbjct: 364 TYKRR 368

[Close]

BLAST of PI0001511 vs. NCBI nr
Match: TYK02435.1 (disease resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 1   MVETLGAVAYRLELPSGAAIHNVFHISQLKFKLGRNQKVQHMPPTLTEDFELEVLLESVL 60
           ++E +GAVAYRL+LP  AAIHNVFHISQLK KLG  Q VQH  P LTE+FEL++  E+VL
Sbjct: 745 IIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVL 804

Query: 61  GIRWHSELRANKWLVKWKGYPESEASWESVYLMNKQFPLFHIEDNVQFEASGTVRPPIIH 120
           GIRW+  L AN+WL+KW+G PESEA+WESVY MN+QFP FH+ED V  E  G VRPPI+H
Sbjct: 805 GIRWNKVLGANEWLIKWQGLPESEATWESVYQMNQQFPSFHLEDKVNVEPRGIVRPPILH 864

Query: 121 TYRRR 126
           TY+RR
Sbjct: 865 TYKRR 869

The following BLAST results are available for this feature:

BLAST of PI0001511 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUN8	3.8e-44	68.00	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DZZ7	2.5e-43	61.43	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E0H6	2.5e-43	68.80	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TCB1	2.5e-43	67.20	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TIE4	7.2e-43	67.20	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of PI0001511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033666.1	7.9e-44	68.00	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK22964.1 Tran...	[more]
TYK29412.1	5.1e-43	68.80	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK28905.1	5.1e-43	61.43	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040538.1	5.1e-43	67.20	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK02435.1	1.5e-42	67.20	disease resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0001511 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 47..97 e-value: 3.5E-7 score: 31.8
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 57..97 e-value: 1.6E-6 score: 27.9
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 54..89 score: 10.204501
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 19..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001511.1	PI0001511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding