Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTCAAATATATTCGCCACACCCAACGCTCTTTCTCTCACTCATGGAGGAATCGCGGAAGAGCCATGAGTTTGTTCGGACGGATGCCTCCACGGAGAAGAGGCAGCGACCTGCCGCGGAGGATATGGACGACGACATTCTGGCTTGGATTTCGTTGGAAGAAGAGACAGTAGGCGAACTCATGATGCTTCTGGACGACGAGGAGAAAAGCCGTCCAGTGGAGGAGAAAGTGAAGTTCATCGACGATCCGTACTCATCGGCGGTGATTTTTCAATCGTCTTCGTCGTACGTGACTATCAACGGAAACGAAGAGAGTTGTGGTTCGTCTTTCTCCGAATCGGACTCGTCGATGATGGCGAGCGTCGACATGAACGGAGCAAGGATTAAAGTGATGGAAATCGATTGTGAAACTGTTGAGAAATGGAAGATGTGGAGCGAGGATGGGTTGATGAAGGAGGAAGAGGAGCTGTCGGGTGTATCGGACGGAATCATGAGTTGGGATGAAGATGATTTAGCGAGGTTCATCGGCGATGAAGAATAGATATTCTGAAACTGTGTGTGACAAAATGGAAATGGTTAGGGTTAGGGTTAGGGGTTTTGAAGAAGTAGAAGAAGAAAGAGGTGAGGATGGAGATGTAAT
mRNA sequence
CTTTTTCAAATATATTCGCCACACCCAACGCTCTTTCTCTCACTCATGGAGGAATCGCGGAAGAGCCATGAGTTTGTTCGGACGGATGCCTCCACGGAGAAGAGGCAGCGACCTGCCGCGGAGGATATGGACGACGACATTCTGGCTTGGATTTCGTTGGAAGAAGAGACAGTAGGCGAACTCATGATGCTTCTGGACGACGAGGAGAAAAGCCGTCCAGTGGAGGAGAAAGTGAAGTTCATCGACGATCCGTACTCATCGGCGGTGATTTTTCAATCGTCTTCGTCGTACGTGACTATCAACGGAAACGAAGAGAGTTGTGGTTCGTCTTTCTCCGAATCGGACTCGTCGATGATGGCGAGCGTCGACATGAACGGAGCAAGGATTAAAGTGATGGAAATCGATTGTGAAACTGTTGAGAAATGGAAGATGTGGAGCGAGGATGGGTTGATGAAGGAGGAAGAGGAGCTGTCGGGTGTATCGGACGGAATCATGAGTTGGGATGAAGATGATTTAGCGAGGTTCATCGGCGATGAAGAATAGATATTCTGAAACTGTGTGTGACAAAATGGAAATGGTTAGGGTTAGGGTTAGGGGTTTTGAAGAAGTAGAAGAAGAAAGAGGTGAGGATGGAGATGTAAT
Coding sequence (CDS)
ATGGAGGAATCGCGGAAGAGCCATGAGTTTGTTCGGACGGATGCCTCCACGGAGAAGAGGCAGCGACCTGCCGCGGAGGATATGGACGACGACATTCTGGCTTGGATTTCGTTGGAAGAAGAGACAGTAGGCGAACTCATGATGCTTCTGGACGACGAGGAGAAAAGCCGTCCAGTGGAGGAGAAAGTGAAGTTCATCGACGATCCGTACTCATCGGCGGTGATTTTTCAATCGTCTTCGTCGTACGTGACTATCAACGGAAACGAAGAGAGTTGTGGTTCGTCTTTCTCCGAATCGGACTCGTCGATGATGGCGAGCGTCGACATGAACGGAGCAAGGATTAAAGTGATGGAAATCGATTGTGAAACTGTTGAGAAATGGAAGATGTGGAGCGAGGATGGGTTGATGAAGGAGGAAGAGGAGCTGTCGGGTGTATCGGACGGAATCATGAGTTGGGATGAAGATGATTTAGCGAGGTTCATCGGCGATGAAGAATAG
Protein sequence
MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEIDCETVEKWKMWSEDGLMKEEEELSGVSDGIMSWDEDDLARFIGDEE
Homology
BLAST of PI0001456 vs. ExPASy TrEMBL
Match:
A0A5A7UZZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00520 PE=4 SV=1)
HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 156/167 (93.41%), Postives = 162/167 (97.01%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
MEESR +HEFVRT+ASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
Query: 61 EKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
EKVKFI+DPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61 EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
Query: 121 CETVEKWKMWSEDGLMK--EEEELSGVSDGIMSWDEDDLARFIGDEE 166
ETVEKWKMWSEDGLMK EEEE+SGV DGI+SWDEDDLARF+GDEE
Sbjct: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of PI0001456 vs. ExPASy TrEMBL
Match:
A0A1S3CB71 (uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=4 SV=1)
HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 156/167 (93.41%), Postives = 162/167 (97.01%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
MEESR +HEFVRT+ASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
Query: 61 EKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
EKVKFI+DPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61 EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
Query: 121 CETVEKWKMWSEDGLMK--EEEELSGVSDGIMSWDEDDLARFIGDEE 166
ETVEKWKMWSEDGLMK EEEE+SGV DGI+SWDEDDLARF+GDEE
Sbjct: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of PI0001456 vs. ExPASy TrEMBL
Match:
A0A5D3CG58 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00940 PE=4 SV=1)
HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 155/167 (92.81%), Postives = 162/167 (97.01%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
MEESR +HEFVRT+ASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
Query: 61 EKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
EKVKFI+DPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61 EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
Query: 121 CETVEKWKMWSEDGLMK--EEEELSGVSDGIMSWDEDDLARFIGDEE 166
ETVEKWKMWSE+GLMK EEEE+SGV DGI+SWDEDDLARF+GDEE
Sbjct: 121 SETVEKWKMWSENGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of PI0001456 vs. ExPASy TrEMBL
Match:
A0A0A0LIN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000450 PE=4 SV=1)
HSP 1 Score: 285.0 bits (728), Expect = 2.0e-73
Identity = 148/165 (89.70%), Postives = 158/165 (95.76%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
MEESRK+H+FVRT+ASTEK EDMDDDILAWISLE+ETVGELMMLLDDEEKSRPVE
Sbjct: 1 MEESRKTHDFVRTEASTEK-----TEDMDDDILAWISLEDETVGELMMLLDDEEKSRPVE 60
Query: 61 EKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
EKVKFI+DPYSSAV+FQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61 EKVKFIEDPYSSAVVFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
Query: 121 CETVEKWKMWSEDGLMKEEEELSGVSDGIMSWDEDDLARFIGDEE 166
CETV+KWKMWSE+ LMKEEEE+SGVS+GIMSWDEDDLARFIGDEE
Sbjct: 121 CETVDKWKMWSEERLMKEEEEVSGVSEGIMSWDEDDLARFIGDEE 160
BLAST of PI0001456 vs. ExPASy TrEMBL
Match:
A0A6J1HN50 (uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 127/167 (76.05%), Postives = 142/167 (85.03%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAA--EDMDDDILAWISLEEETVGELMMLLDDEEKSRP 60
MEE+RK H+FV + ST+KR R AA ED+ +DILAWIS+EEETVGELMMLLDD EKSRP
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
Query: 61 VEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVME 120
+ EKVKFIDDPYSSA+IFQSSSS+VTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME
Sbjct: 61 MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
Query: 121 IDCETVEKWKMWSEDGLMKEEEELSGVSDGIMSWDEDDLARFIGDEE 166
ID TVEKWK+W + EE S VS+G SWDEDDLARFIGDEE
Sbjct: 121 IDSATVEKWKLW-------KTEEASSVSEG-FSWDEDDLARFIGDEE 159
BLAST of PI0001456 vs. NCBI nr
Match:
XP_008459356.1 (PREDICTED: uncharacterized protein LOC103498512 [Cucumis melo] >KAA0061492.1 uncharacterized protein E6C27_scaffold41G00520 [Cucumis melo var. makuwa])
HSP 1 Score: 297.4 bits (760), Expect = 7.8e-77
Identity = 156/167 (93.41%), Postives = 162/167 (97.01%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
MEESR +HEFVRT+ASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
Query: 61 EKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
EKVKFI+DPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61 EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
Query: 121 CETVEKWKMWSEDGLMK--EEEELSGVSDGIMSWDEDDLARFIGDEE 166
ETVEKWKMWSEDGLMK EEEE+SGV DGI+SWDEDDLARF+GDEE
Sbjct: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of PI0001456 vs. NCBI nr
Match:
TYK10781.1 (uncharacterized protein E5676_scaffold332G00940 [Cucumis melo var. makuwa])
HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 155/167 (92.81%), Postives = 162/167 (97.01%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
MEESR +HEFVRT+ASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
Query: 61 EKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
EKVKFI+DPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 61 EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
Query: 121 CETVEKWKMWSEDGLMK--EEEELSGVSDGIMSWDEDDLARFIGDEE 166
ETVEKWKMWSE+GLMK EEEE+SGV DGI+SWDEDDLARF+GDEE
Sbjct: 121 SETVEKWKMWSENGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of PI0001456 vs. NCBI nr
Match:
XP_011648606.2 (uncharacterized protein LOC105434536 [Cucumis sativus] >KGN60561.2 hypothetical protein Csa_019291 [Cucumis sativus])
HSP 1 Score: 285.0 bits (728), Expect = 4.0e-73
Identity = 148/165 (89.70%), Postives = 158/165 (95.76%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60
MEESRK+H+FVRT+ASTEK EDMDDDILAWISLE+ETVGELMMLLDDEEKSRPVE
Sbjct: 36 MEESRKTHDFVRTEASTEK-----TEDMDDDILAWISLEDETVGELMMLLDDEEKSRPVE 95
Query: 61 EKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120
EKVKFI+DPYSSAV+FQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID
Sbjct: 96 EKVKFIEDPYSSAVVFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 155
Query: 121 CETVEKWKMWSEDGLMKEEEELSGVSDGIMSWDEDDLARFIGDEE 166
CETV+KWKMWSE+ LMKEEEE+SGVS+GIMSWDEDDLARFIGDEE
Sbjct: 156 CETVDKWKMWSEERLMKEEEEVSGVSEGIMSWDEDDLARFIGDEE 195
BLAST of PI0001456 vs. NCBI nr
Match:
XP_038890889.1 (uncharacterized protein LOC120080324 [Benincasa hispida])
HSP 1 Score: 257.7 bits (657), Expect = 6.9e-65
Identity = 143/168 (85.12%), Postives = 150/168 (89.29%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPA---AEDMDDDILAWISLEEETVGELMMLLDDEEKSR 60
M+ESRK HEFV +ASTEKR R A AED+DDDILAWIS+EEETVGELMMLLDD EKSR
Sbjct: 1 MDESRKRHEFVPPEASTEKRPRVAVKEAEDVDDDILAWISVEEETVGELMMLLDDVEKSR 60
Query: 61 PVEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVM 120
P+EEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIK+M
Sbjct: 61 PMEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKLM 120
Query: 121 EIDCETVEKWKMWSEDGLMKEEEELSGVSDGIMSWDEDDLARFIGDEE 166
EID ETVEKWK+WSED L KEEEE S V DG WDEDDLARFIGDEE
Sbjct: 121 EIDSETVEKWKLWSEDRL-KEEEETSAVLDG-FCWDEDDLARFIGDEE 166
BLAST of PI0001456 vs. NCBI nr
Match:
KAG6586479.1 (hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021338.1 hypothetical protein SDJN02_18027, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 229.6 bits (584), Expect = 2.0e-56
Identity = 126/167 (75.45%), Postives = 143/167 (85.63%), Query Frame = 0
Query: 1 MEESRKSHEFVRTDASTEKRQRPAA--EDMDDDILAWISLEEETVGELMMLLDDEEKSRP 60
MEE+RK H+FV + ST+KR R AA ED+ +DILAWIS+EEETVGELMMLLDD EKSRP
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60
Query: 61 VEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVME 120
+ EKVKFIDDPYSSA+IFQSSSS+VTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME
Sbjct: 61 MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
Query: 121 IDCETVEKWKMWSEDGLMKEEEELSGVSDGIMSWDEDDLARFIGDEE 166
ID TVEKWK+W + EE+S +S+G SWDEDDLARFIGDEE
Sbjct: 121 IDSATVEKWKLW-------KSEEVSSISEG-SSWDEDDLARFIGDEE 159
BLAST of PI0001456 vs. TAIR 10
Match:
AT5G56880.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 77.8 bits (190), Expect = 9.1e-15
Identity = 55/138 (39.86%), Postives = 75/138 (54.35%), Query Frame = 0
Query: 39 EEETVGELMMLLDDEEKSRPVEE------------KVKFIDDPYSSAVIFQSSSSYVTIN 98
+E T E+M L++ + E +V+FIDDPY+ V+ QSSS Y+TIN
Sbjct: 33 DEYTPDEIMSLVESSSPTMTTTEIEGTNFSGEGSFRVRFIDDPYAMPVVVQSSSGYITIN 92
Query: 99 GNEESCGSSFSESDSSMMASVDMNGARIKVMEIDCETVEKWKMWSEDGLMKEEEELSGVS 158
NEESCG SFS+SDSS+MASVD +G E EK WS + + E E
Sbjct: 93 VNEESCGPSFSDSDSSVMASVDASGLFGCCFEYG---NEKGGAWSTNEVRASEYE----- 152
Query: 159 DGIMSWDEDDLARFIGDE 165
W++D LARF+G++
Sbjct: 153 -----WNDDMLARFLGED 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UZZ9 | 3.8e-77 | 93.41 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A1S3CB71 | 3.8e-77 | 93.41 | uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=... | [more] |
A0A5D3CG58 | 1.4e-76 | 92.81 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LIN0 | 2.0e-73 | 89.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000450 PE=4 SV=1 | [more] |
A0A6J1HN50 | 1.3e-56 | 76.05 | uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706... | [more] |
Match Name | E-value | Identity | Description | |
XP_008459356.1 | 7.8e-77 | 93.41 | PREDICTED: uncharacterized protein LOC103498512 [Cucumis melo] >KAA0061492.1 unc... | [more] |
TYK10781.1 | 3.0e-76 | 92.81 | uncharacterized protein E5676_scaffold332G00940 [Cucumis melo var. makuwa] | [more] |
XP_011648606.2 | 4.0e-73 | 89.70 | uncharacterized protein LOC105434536 [Cucumis sativus] >KGN60561.2 hypothetical ... | [more] |
XP_038890889.1 | 6.9e-65 | 85.12 | uncharacterized protein LOC120080324 [Benincasa hispida] | [more] |
KAG6586479.1 | 2.0e-56 | 75.45 | hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
AT5G56880.1 | 9.1e-15 | 39.86 | unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter... | [more] |